Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Reverse (-)

13365613 .. 13367897

Gene Structure 2285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0144000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCCATGGAATTCGCTTCCTGCTCAATTCTGAGGCCTCAGTCTTTTTCAACCATCTTTCACCATACCAACTTCACCTCTTTGCTTTACCCAAGAACCATCTCAACTTGCCCTCTCCATTTTCGCCAACTTTCCCAAAAAACTCAACCTTTCCTGGAAAATGTTGCCACTTTCATCGCTTCAATGCTTTCAGCTCACTTTCCGGCGCCAACTACCAGAACCCATCTGCGCAACTCGCCGTTCTTCTTGAAGTTGACGGGTAACATTCTCTTTTTCTCACACCCAAGTTGTTTGATTGATTTATTCAGCCTTGAATTGAATGGTGTTCTTAAAGGTGATGACTTCACCGGTTCTATGGATGTATATCACTTGGGTAACCACCAGACATTCAATGAAGTGTGCTGGTACAAGGAAAAGATGCTGATTATGTATTTTAGTCAGATTGGTTGGCCTTCGTCCTTGCCCACTACTGAGAAGGAATCATTTGTAAACAATGTTCTGCAAAAAAAGACAGTAACATTCCTATTTTTCATTTCCATTTGCAATGAAGGAACACCTGCGGTCATACTGAGATCCTATAGTAAAAGTGGAGATAAAATTGCCAGGTCCATTATTGATAAGCTTGGCCATCAAAGAGTTTCGAAGCTAAAGATTGTTGGGTTAAAGGAGGTGGACATGAACTTCATATGGTCAATTTTTGTGTCCAAACCTCAGGTTCGATGGAGGCAGGTTATTCCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008690 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019867 GO:0022414 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0033467 GO:0033468 GO:0034641 GO:0034654 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055086 GO:0060560 GO:0070567 GO:0071704 GO:0071840 GO:0098573 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

247

Amino Acids

28.3

Weight (kDa)

9.44

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
Acc16I	TGCGCA	1 cut(s)	230
Acc36I	ACCTGC	2 cut(s)	565, 718
AccB1I	GGYRCC	1 cut(s)	205
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	1 cut(s)	567
AcoI	YGGCCR	2 cut(s)	3, 625
AcsI	RAATTY	1 cut(s)	11
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	1 cut(s)	407
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	6 cut(s)	51, 183, 250, 314, 319, 391
AjnI	CCWGG	2 cut(s)	153, 602
AluBI	AGCT	3 cut(s)	194, 622, 646
AluI	AGCT	3 cut(s)	194, 622, 646
AlwI	GGATC	1 cut(s)	567
AoxI	GGCC	4 cut(s)	3, 35, 449, 625
ApoI	RAATTY	1 cut(s)	11
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	208, 231
AspS9I	GGNCC	1 cut(s)	606
AsuHPI	GGTGA	4 cut(s)	53, 67, 337, 347
AsuII	TTCGAA	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	606
AxyI	CCTNAGG	1 cut(s)	711
BalI	TGGCCA	2 cut(s)	5, 627
BanI	GGYRCC	1 cut(s)	205
BccI	CCATC	5 cut(s)	62, 107, 231, 636, 714
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	155, 604
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	1 cut(s)	577
BfoI	RGCGCY	1 cut(s)	209
BfuAI	ACCTGC	2 cut(s)	565, 718
Bme1390I	CCNGG	2 cut(s)	155, 604
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	155, 604
BmsI	GCATC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	206
BsaJI	CCNNGG	1 cut(s)	6
BsaWI	WCCGGW	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	347
Bse21I	CCTNAGG	1 cut(s)	711
Bse3DI	GCAATG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	155, 604
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	364
BseJI	GATNNNNATC	1 cut(s)	363
BseMI	GCAATG	1 cut(s)	550
BseMII	CTCAG	5 cut(s)	23, 53, 462, 560, 725
BshFI	GGCC	4 cut(s)	5, 37, 451, 627
BshNI	GGYRCC	1 cut(s)	205
BshTI	ACCGGT	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	203, 348
BsnI	GGCC	4 cut(s)	5, 37, 451, 627
Bsp119I	TTCGAA	1 cut(s)	641
Bsp143I	GATC	1 cut(s)	572
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	4 cut(s)	5, 37, 451, 627
BspCNI	CTCAG	5 cut(s)	24, 52, 463, 561, 724
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	2 cut(s)	565, 718
BspPI	GGATC	1 cut(s)	567
BspT104I	TTCGAA	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	1 cut(s)	572
BssNI	GRCGYC	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	2 cut(s)	155, 604
Bst4CI	ACNGT	1 cut(s)	514
BstACI	GRCGYC	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	641
BstDEI	CTNAG	5 cut(s)	32, 39, 471, 569, 711
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	364
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	208, 231
BstKTI	GATC	1 cut(s)	575
BstMBI	GATC	1 cut(s)	572
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNI	CCWGG	2 cut(s)	155, 604
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	153, 602
BstSFI	CTRYAG	1 cut(s)	577
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
Bsu36I	CCTNAGG	1 cut(s)	711
BsuRI	GGCC	4 cut(s)	5, 37, 451, 627
BtgI	CCRYGG	1 cut(s)	6
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	1 cut(s)	364
BveI	ACCTGC	2 cut(s)	565, 718
CfoI	GCGC	2 cut(s)	208, 231
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	1 cut(s)	406
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	7, 676
CviJI	RGCY	8 cut(s)	5, 37, 194, 309, 451, 622, 627, 646
CviKI_1	RGCY	8 cut(s)	5, 37, 194, 309, 451, 622, 627, 646
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	5 cut(s)	32, 39, 471, 569, 711
DinI	GGCGCC	1 cut(s)	207
DpnI	GATC	1 cut(s)	574
DpnII	GATC	1 cut(s)	572
EaeI	YGGCCR	2 cut(s)	3, 625
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	606
Eco81I	CCTNAGG	1 cut(s)	711
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	153, 602
EcoT14I	CCWWGG	1 cut(s)	6
EgeI	GGCGCC	1 cut(s)	207
EheI	GGCGCC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	10, 679
FatI	CATG	2 cut(s)	6, 675
FauNDI	CATATG	1 cut(s)	686
FokI	GGATG	1 cut(s)	371
FspBI	CTAG	1 cut(s)	738
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	2 cut(s)	207, 230
HaeII	RGCGCY	1 cut(s)	209
HaeIII	GGCC	4 cut(s)	5, 37, 451, 627
HapII	CCGG	2 cut(s)	203, 348
HhaI	GCGC	2 cut(s)	208, 231
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	2 cut(s)	10, 679
Hin6I	GCGC	2 cut(s)	206, 229
HinP1I	GCGC	2 cut(s)	206, 229
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	2 cut(s)	203, 348
HphI	GGTGA	4 cut(s)	53, 67, 337, 347
Hpy166II	GTNNAC	3 cut(s)	255, 490, 673
Hpy188I	TCNGA	2 cut(s)	33, 441
Hpy188III	TCNNGA	1 cut(s)	247
Hpy8I	GTNNAC	3 cut(s)	255, 490, 673
HpyAV	CCTTC	3 cut(s)	462, 469, 542
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4V	TGCA	2 cut(s)	502, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	5 cut(s)	32, 39, 471, 569, 711
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	2 cut(s)	10, 679
HspAI	GCGC	2 cut(s)	206, 229
KasI	GGCGCC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	572
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	738
MaeIII	GTNAC	3 cut(s)	260, 374, 514
MalI	GATC	1 cut(s)	574
MboI	GATC	1 cut(s)	572
MboII	GAAGA	1 cut(s)	235
MflI	RGATCY	1 cut(s)	572
MlsI	TGGCCA	2 cut(s)	5, 627
MluCI	AATT	5 cut(s)	11, 27, 314, 597, 693
MluNI	TGGCCA	2 cut(s)	5, 627
Mly113I	GGCGCC	1 cut(s)	206
MnlI	CCTC	7 cut(s)	27, 48, 88, 123, 661, 717, 720
Mox20I	TGGCCA	2 cut(s)	5, 627
MscI	TGGCCA	2 cut(s)	5, 627
MseI	TTAA	2 cut(s)	330, 662
Msp20I	TGGCCA	2 cut(s)	5, 627
MspI	CCGG	2 cut(s)	203, 348
MspR9I	CCNGG	2 cut(s)	155, 604
MvaI	CCWGG	2 cut(s)	155, 604
MwoI	GCNNNNNNNGC	1 cut(s)	235
NarI	GGCGCC	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	686
NdeII	GATC	1 cut(s)	572
NlaIII	CATG	2 cut(s)	10, 679
NlaIV	GGNNCC	1 cut(s)	207
NsbI	TGCGCA	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	641
PaqCI	CACCTGC	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	479
PfoI	TCCNGGA	1 cut(s)	153
PinAI	ACCGGT	1 cut(s)	347
PluTI	GGCGCC	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	153, 602
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	153, 602
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	606
PsrI	GAACNNNNNNTAC	2 cut(s)	480, 512
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	330, 662
Sau3AI	GATC	1 cut(s)	572
Sau96I	GGNCC	1 cut(s)	606
ScrFI	CCNGG	2 cut(s)	155, 604
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	577
SfoI	GGCGCC	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	641
SinI	GGWCC	1 cut(s)	606
Sse9I	AATT	5 cut(s)	11, 27, 314, 597, 693
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	1 cut(s)	560
SspDI	GGCGCC	1 cut(s)	205
SspMI	CTAG	1 cut(s)	738
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	2 cut(s)	153, 602
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	514
TaqI	TCGA	2 cut(s)	641, 718
TasI	AATT	5 cut(s)	11, 27, 314, 597, 693
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	330, 662
Tru9I	TTAA	2 cut(s)	330, 662
TspDTI	ATGAA	6 cut(s)	163, 408, 520, 561, 673, 692
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	11
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.