Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021840.1

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Forward (+)

784 .. 4742

Gene Structure 3959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021840.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgagaggctcatcttccccaccatctagctcggacggtaccacccgttcatggataatagctggagcggctgtggctgcagcgacggcagcgtacgctgtggtttcaaggcggcgatcggcggggtttcggagccgggtggtcggaatcatacctgcgcgtttcgcttcctccagatttcccggcaaacctctggttccaattctcggaaagcccatgatccagaggacatgggaaagagcaaaacttgcaaacaagctggatcaacttgttgtcgctactgatgataagaaaatagcagcatgctgttcagattttggagctaatgtcataatgacatcagaaacttgcagaaatggaactgaacgctgcactgaggcgctccaaaagcttacgaagaagtttgacatcgttgttaacattcagggtgatgaacctcttatagagcccgagataatagatggggttgtcatggccctgcagggtgcccctgatgctgtgtttagcactgcagttacctcattgaaacctgaagatccctctgatccaaatcgggtaaagtgtgtggtggacaatcatggttatgcaatctatttctcaaggggtttaatcccctacaacaatactaccactgaatcagatgattacactcacaaattcctaaacactcaaggcagttggtctcctctcttgttggtccgggctcctactctgctggctcctcaactgttgttgactcattgggcggtggttcttgcccttgctgtggctgtatacaatttgctgtttaaccattccgagcacggagcatccactgttgttactgatcaatccacccatactcccatagtcatgagtttggtcagactcggagcccccatccaagaagtaaccagaattggagggcctcgtcgacaacgacgtcttggtttagtgaatctaattcgacggcgacatgggtcgtggggtgctggcagaggtgctgctattctgtggcggtgtgggtcgcagtggcgtagatcggggcagagctataccagagctgtgaagtgcgacggtcgggatacaaatggagactggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

361

Amino Acids

39.32

Weight (kDa)

9.8

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	921
AatII	GACGTC	1 cut(s)	925
Acc36I	ACCTGC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	2 cut(s)	38, 485
AccBSI	CCGCTC	1 cut(s)	68
AccI	GTMKAC	2 cut(s)	774, 913
AccII	CGCG	1 cut(s)	160
AciI	CCGC	5 cut(s)	68, 112, 122, 746, 997
AclWI	GGATC	4 cut(s)	214, 270, 530, 539
AcsI	RAATTY	1 cut(s)	656
AcuI	CTGAAG	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	922
AfaI	GTAC	2 cut(s)	40, 95
AfiI	CCNNNNNNNGG	3 cut(s)	51, 206, 766
AgsI	TTSAA	2 cut(s)	108, 526
AluBI	AGCT	7 cut(s)	30, 62, 259, 323, 391, 1032, 1043
AluI	AGCT	7 cut(s)	30, 62, 259, 323, 391, 1032, 1043
Alw21I	GWGCWC	1 cut(s)	804
Alw26I	GTCTC	2 cut(s)	687, 1068
AlwI	GGATC	4 cut(s)	214, 270, 530, 539
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	2 cut(s)	474, 905
ApeKI	GCWGC	6 cut(s)	77, 80, 89, 299, 369, 983
ApoI	RAATTY	1 cut(s)	656
Asp718I	GGTACC	1 cut(s)	38
AspLEI	GCGC	2 cut(s)	160, 382
AspS9I	GGNCC	3 cut(s)	475, 697, 905
AsuC2I	CCSGG	3 cut(s)	137, 183, 701
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	490
BanI	GGYRCC	2 cut(s)	38, 485
BanII	GRGCYC	3 cut(s)	450, 706, 877
Bbv12I	GWGCWC	1 cut(s)	804
BbvI	GCAGC	6 cut(s)	64, 92, 101, 311, 356, 970
BccI	CCATC	3 cut(s)	31, 455, 887
BceAI	ACGGC	2 cut(s)	102, 965
BciVI	GTATCC	1 cut(s)	1057
BclI	TGATCA	1 cut(s)	826
BcnI	CCSGG	3 cut(s)	137, 183, 701
BcoDI	GTCTC	2 cut(s)	687, 1068
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	3 cut(s)	78, 479, 510
BfoI	RGCGCY	1 cut(s)	383
BfuAI	ACCTGC	1 cut(s)	163
BfuI	GTATCC	1 cut(s)	1057
BisI	GCNGC	8 cut(s)	69, 78, 81, 90, 113, 300, 370, 984
BlsI	GCNGC	8 cut(s)	70, 79, 82, 91, 114, 301, 371, 985
Bme1390I	CCNGG	3 cut(s)	137, 183, 701
Bme18I	GGWCC	1 cut(s)	697
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	3 cut(s)	475, 697, 905
BmiI	GGNNCC	7 cut(s)	40, 134, 198, 487, 705, 720, 874
BmrFI	CCNGG	3 cut(s)	137, 183, 701
BmsI	GCATC	2 cut(s)	484, 818
BoxI	GACNNNNGTC	1 cut(s)	958
BpmI	CTGGAG	2 cut(s)	84, 157
BpuEI	CTTGAG	2 cut(s)	583, 654
BpuMI	CCSGG	3 cut(s)	137, 183, 701
BsaBI	GATNNNNATC	1 cut(s)	549
BsaHI	GRCGYC	1 cut(s)	922
BsaI	GGTCTC	1 cut(s)	687
BsaXI	ACNNNNNCTCC	6 cut(s)	57, 87, 312, 342, 826, 856
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 206, 766
Bse1I	ACTGG	1 cut(s)	1082
Bse8I	GATNNNNATC	1 cut(s)	549
BseGI	GGATG	2 cut(s)	809, 879
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	3 cut(s)	51, 206, 766
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	1082
BseRI	GAGGAG	2 cut(s)	675, 711
BseSI	GKGCMC	1 cut(s)	490
BseXI	GCAGC	6 cut(s)	64, 92, 101, 311, 356, 970
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	2 cut(s)	119, 1060
BshFI	GGCC	2 cut(s)	476, 907
BshNI	GGYRCC	2 cut(s)	38, 485
BsiEI	CGRYCG	2 cut(s)	119, 1060
BsiHKAI	GWGCWC	1 cut(s)	804
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	136, 183, 700
BsiWI	CGTACG	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	51, 206, 766
BsmAI	GTCTC	2 cut(s)	687, 1068
BsnI	GGCC	2 cut(s)	476, 907
Bso31I	GGTCTC	1 cut(s)	687
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	5 cut(s)	450, 490, 706, 804, 877
Bsp143I	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
BspACI	CCGC	5 cut(s)	68, 112, 122, 746, 997
BspANI	GGCC	2 cut(s)	476, 907
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	7 cut(s)	40, 134, 198, 487, 705, 720, 874
BspMAI	CTGCAG	3 cut(s)	82, 483, 514
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	4 cut(s)	214, 270, 530, 539
BspT107I	GGYRCC	2 cut(s)	38, 485
BspTNI	GGTCTC	1 cut(s)	687
BsrBI	CCGCTC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	1082
BssMI	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
BssNAI	GTATAC	1 cut(s)	775
BssNI	GRCGYC	1 cut(s)	922
Bst1107I	GTATAC	1 cut(s)	775
Bst4CI	ACNGT	4 cut(s)	38, 729, 817, 1058
BstACI	GRCGYC	1 cut(s)	922
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	304, 717, 973
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	809, 879
BstFNI	CGCG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	383
BstHHI	GCGC	2 cut(s)	160, 382
BstKTI	GATC	7 cut(s)	119, 222, 265, 538, 547, 829, 1022
BstMAI	GTCTC	2 cut(s)	687, 1068
BstMBI	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
BstMCI	CGRYCG	2 cut(s)	119, 1060
BstNSI	RCATGY	1 cut(s)	306
BstPAI	GACNNNNGTC	1 cut(s)	958
BstSCI	CCNGG	3 cut(s)	135, 181, 699
BstSFI	CTRYAG	3 cut(s)	78, 479, 510
BstSLI	GKGCMC	1 cut(s)	490
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	6 cut(s)	64, 92, 101, 311, 356, 970
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BstZ17I	GTATAC	1 cut(s)	775
BsuI	GTATCC	1 cut(s)	1057
BsuRI	GGCC	2 cut(s)	476, 907
BtsCI	GGATG	2 cut(s)	809, 879
BtsI	GCAGTG	2 cut(s)	507, 1016
BtsIMutI	CAGTG	5 cut(s)	372, 507, 630, 813, 1016
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	3 cut(s)	304, 717, 973
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	2 cut(s)	160, 382
Cfr13I	GGNCC	3 cut(s)	475, 697, 905
Csp6I	GTAC	2 cut(s)	39, 94
CviAII	CATG	8 cut(s)	51, 217, 231, 303, 472, 578, 853, 956
CviQI	GTAC	2 cut(s)	39, 94
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	7 cut(s)	118, 221, 264, 537, 546, 828, 1021
DpnII	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
DrdI	GACNNNNNNGTC	1 cut(s)	921
DseDI	GACNNNNNNGTC	1 cut(s)	921
Eco24I	GRGCYC	3 cut(s)	450, 706, 877
Eco31I	GGTCTC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	905
EcoT38I	GRGCYC	3 cut(s)	450, 706, 877
FaeI	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 856, 959
FatI	CATG	8 cut(s)	50, 216, 230, 302, 471, 577, 852, 955
FauI	CCCGC	1 cut(s)	115
FbaI	TGATCA	1 cut(s)	826
FblI	GTMKAC	2 cut(s)	774, 913
Fnu4HI	GCNGC	8 cut(s)	69, 78, 81, 90, 113, 300, 370, 984
FokI	GGATG	2 cut(s)	796, 866
FriOI	GRGCYC	3 cut(s)	450, 706, 877
Fsp4HI	GCNGC	8 cut(s)	69, 78, 81, 90, 113, 300, 370, 984
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	2 cut(s)	159, 381
GluI	GCNGC	8 cut(s)	69, 78, 81, 90, 113, 300, 370, 984
GsuI	CTGGAG	2 cut(s)	84, 157
HaeII	RGCGCY	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	476, 907
HapII	CCGG	3 cut(s)	136, 183, 700
HhaI	GCGC	2 cut(s)	160, 382
Hin1I	GRCGYC	1 cut(s)	922
Hin1II	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 856, 959
Hin6I	GCGC	2 cut(s)	158, 380
HinP1I	GCGC	2 cut(s)	158, 380
HincII	GTYRAC	3 cut(s)	418, 735, 914
HindII	GTYRAC	3 cut(s)	418, 735, 914
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	147, 635, 736, 867, 937
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	3 cut(s)	136, 183, 700
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	5 cut(s)	418, 571, 735, 775, 914
Hpy188III	TCNNGA	4 cut(s)	174, 223, 853, 1061
Hpy8I	GTNNAC	5 cut(s)	418, 571, 735, 775, 914
Hpy99I	CGWCG	5 cut(s)	88, 915, 924, 951, 1058
HpyCH4III	ACNGT	4 cut(s)	38, 729, 817, 1058
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	7 cut(s)	80, 251, 351, 372, 481, 512, 587
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	1 cut(s)	922
Hsp92I	GRCGYC	1 cut(s)	922
Hsp92II	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 856, 959
HspAI	GCGC	2 cut(s)	158, 380
KpnI	GGTACC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	826
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
LmnI	GCTCC	8 cut(s)	65, 132, 320, 387, 709, 724, 806, 872
Lsp1109I	GCAGC	6 cut(s)	64, 92, 101, 311, 356, 970
LweI	GCATC	2 cut(s)	484, 818
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	3 cut(s)	514, 820, 889
MalI	GATC	7 cut(s)	118, 221, 264, 537, 546, 828, 1021
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
MboII	GAAGA	3 cut(s)	6, 409, 545
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	5 cut(s)	450, 490, 706, 804, 877
MluCI	AATT	5 cut(s)	201, 656, 778, 897, 942
MlyI	GAGTC	2 cut(s)	730, 861
MmeI	TCCRAC	1 cut(s)	124
MseI	TTAA	3 cut(s)	417, 608, 789
MslI	CAYNNNNRTG	2 cut(s)	582, 851
MspI	CCGG	3 cut(s)	136, 183, 700
MspR9I	CCNGG	3 cut(s)	137, 183, 701
MvnI	CGCG	1 cut(s)	160
NciI	CCSGG	3 cut(s)	137, 183, 701
NdeII	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
NlaIII	CATG	8 cut(s)	54, 220, 234, 306, 475, 581, 856, 959
NlaIV	GGNNCC	7 cut(s)	40, 134, 198, 487, 705, 720, 874
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PagI	TCATGA	1 cut(s)	852
PcsI	WCGNNNNNNNCGW	2 cut(s)	916, 919
PfeI	GAWTC	3 cut(s)	147, 635, 937
Pfl23II	CGTACG	1 cut(s)	93
PkrI	GCNGC	8 cut(s)	70, 79, 82, 91, 114, 301, 371, 985
Ple19I	CGATCG	1 cut(s)	119
PleI	GAGTC	2 cut(s)	730, 861
PpsI	GAGTC	2 cut(s)	730, 861
PshAI	GACNNNNGTC	1 cut(s)	958
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	7 cut(s)	40, 134, 198, 487, 705, 720, 874
PspPI	GGNCC	3 cut(s)	475, 697, 905
PsrI	GAACNNNNNNTAC	2 cut(s)	31, 63
PstI	CTGCAG	3 cut(s)	82, 483, 514
PsuI	RGATCY	1 cut(s)	535
PvuI	CGATCG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	40, 95
RsaNI	GTAC	2 cut(s)	39, 94
RseI	CAYNNNNRTG	2 cut(s)	582, 851
SalI	GTCGAC	1 cut(s)	912
SaqAI	TTAA	3 cut(s)	417, 608, 789
SatI	GCNGC	8 cut(s)	69, 78, 81, 90, 113, 300, 370, 984
Sau3AI	GATC	7 cut(s)	116, 219, 262, 535, 544, 826, 1019
Sau96I	GGNCC	3 cut(s)	475, 697, 905
SbfI	CCTGCAGG	1 cut(s)	483
SchI	GAGTC	2 cut(s)	730, 861
ScrFI	CCNGG	3 cut(s)	137, 183, 701
SdaI	CCTGCAGG	1 cut(s)	483
SduI	GDGCHC	5 cut(s)	450, 490, 706, 804, 877
SfaNI	GCATC	2 cut(s)	484, 818
SfcI	CTRYAG	3 cut(s)	78, 479, 510
SinI	GGWCC	1 cut(s)	697
SmiMI	CAYNNNNRTG	2 cut(s)	582, 851
SmlI	CTYRAG	2 cut(s)	598, 669
SmoI	CTYRAG	2 cut(s)	598, 669
SphI	GCATGC	1 cut(s)	306
Sse8387I	CCTGCAGG	1 cut(s)	483
Sse9I	AATT	5 cut(s)	201, 656, 778, 897, 942
SsiI	CCGC	5 cut(s)	68, 112, 122, 746, 997
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	135, 181, 699
TaaI	ACNGT	4 cut(s)	38, 729, 817, 1058
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	2 cut(s)	913, 946
TasI	AATT	5 cut(s)	201, 656, 778, 897, 942
TauI	GCSGC	2 cut(s)	71, 115
TfiI	GAWTC	3 cut(s)	147, 635, 937
Tru1I	TTAA	3 cut(s)	417, 608, 789
Tru9I	TTAA	3 cut(s)	417, 608, 789
TscAI	CASTG	5 cut(s)	379, 514, 637, 820, 1016
TseI	GCWGC	6 cut(s)	77, 80, 89, 299, 369, 983
TspDTI	ATGAA	2 cut(s)	39, 447
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	5 cut(s)	379, 514, 637, 820, 1016
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	1 cut(s)	656
XceI	RCATGY	1 cut(s)	306
XmiI	GTMKAC	2 cut(s)	774, 913
XspI	CTAG	1 cut(s)	27
ZraI	GACGTC	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.