Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Reverse (-)

31174557 .. 31178192

Gene Structure 3636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1226400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTCGTCGTCGTCTGGATCTTGGAACAGCACCAAGGCATGGATCGTTCACGGAATCGTCGCCGGAGTTGCGGTTGCGGCGGCAATTGGGGCCCGGGCCTACTTGGGTCCGACTAGGAAGTTCCGGAGCCGGGTAGTCGGCATTATACCCGCCCGCTTCGCTTCTTCTCGTTTCCAGGGCAAGCCCCTCGTTCAGATCCTCGGCAAACCCATGATTCAGAGAACATGGGAAAGGGCAAAACTAGCAAGTACATTGGATCATGTTGTTGTGGCAACAGATGATGAGAAGATTCGAGAATGTTGTCGCAGTTTTGGAGCTGATGTCATAATGACCTCGGAATCCTGCCGGAACGGTACCGAGCGTTGTTCTGAAGCAATTGAGAAGCTCGAGAAGAAGTATGATATAGTTGTCAATATTCAGGGGGATGAACCTCTTATTGAACCTGAGATAATAGATGGAATTGTTAAAGCTTTGCAGGCAGCTCCAGATGCAGTGTTTAGCACTGCCGTCACGTCATTAAAACTTGAAGATGCAATGGATCCAAATCGAGTGAAATGTGTGGTGAATAATAGTGGTTATGCCATCTACTTTTCAAGGGGGTTGATTCCATTTAACAAGTCAGGAAAGGCCAATCCACAGTTTCCCTATTTGCTTCATCTTGGAATTCAGAGCTATGATACAAAGTTTCTAAAGATATATCCAGAACTTCAACCTACTCCTTTGCAACTAGAAGAGGATCTGGAGCAGCTTAAGGTCCTTGAAAATGGGTATAAGATGAAGGTGATTAAGGTCGACCATGAGGCTCACGGTGTTGACACCCCAGAAGATGTTGAAAAGATTGAATCTCTGATGTGCGAAAGGAACCTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008690 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019867 GO:0022414 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0033467 GO:0033468 GO:0034641 GO:0034654 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055086 GO:0060560 GO:0070567 GO:0071704 GO:0071840 GO:0098573 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

291

Amino Acids

32.11

Weight (kDa)

6.55

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_3	PF02348	46 - 258	1.5e-59	Cytidylyltransferase
NTP_transf_3	PF12804	55 - 166	1.3e-10	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	353
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	792
AccIII	TCCGGA	1 cut(s)	123
AciI	CCGC	5 cut(s)	71, 77, 80, 150, 154
AclWI	GGATC	7 cut(s)	25, 50, 190, 264, 533, 546, 744
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	250, 355
AfiI	CCNNNNNNNGG	2 cut(s)	39, 130
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	7 cut(s)	440, 527, 594, 710, 761, 833, 842
AjiI	CACGTC	1 cut(s)	513
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	6 cut(s)	317, 385, 470, 482, 672, 748
AluI	AGCT	6 cut(s)	317, 385, 470, 482, 672, 748
AlwI	GGATC	7 cut(s)	25, 50, 190, 264, 533, 546, 744
Ama87I	CYCGRG	2 cut(s)	93, 386
Aor13HI	TCCGGA	1 cut(s)	123
AoxI	GGCC	3 cut(s)	90, 96, 627
ApaI	GGGCCC	1 cut(s)	94
ApeKI	GCWGC	2 cut(s)	479, 745
ApoI	RAATTY	1 cut(s)	663
Asp718I	GGTACC	1 cut(s)	353
AspS9I	GGNCC	5 cut(s)	90, 91, 96, 107, 754
AsuC2I	CCSGG	3 cut(s)	94, 95, 131
AsuHPI	GGTGA	2 cut(s)	574, 793
AvaI	CYCGRG	2 cut(s)	93, 386
AvaII	GGWCC	2 cut(s)	107, 754
BaeGI	GKGCMC	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	491, 757
BccI	CCATC	2 cut(s)	449, 590
BceAI	ACGGC	1 cut(s)	491
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	3 cut(s)	94, 95, 131
BfaI	CTAG	3 cut(s)	114, 242, 728
BfrI	CTTAAG	1 cut(s)	749
BisI	GCNGC	4 cut(s)	78, 81, 480, 746
BlsI	GCNGC	4 cut(s)	79, 82, 481, 747
Bme1390I	CCNGG	4 cut(s)	94, 95, 131, 176
Bme18I	GGWCC	2 cut(s)	107, 754
BmeT110I	CYCGRG	2 cut(s)	93, 386
BmgBI	CACGTC	1 cut(s)	513
BmgT120I	GGNCC	5 cut(s)	90, 91, 96, 107, 754
BmiI	GGNNCC	7 cut(s)	91, 92, 108, 128, 355, 540, 863
BmrFI	CCNGG	4 cut(s)	94, 95, 131, 176
BmsI	GCATC	2 cut(s)	478, 520
BpmI	CTGGAG	2 cut(s)	468, 761
BpuMI	CCSGG	3 cut(s)	94, 95, 131
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	5 cut(s)	33, 93, 175, 199, 333
BsaWI	WCCGGW	1 cut(s)	123
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 306, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 130
Bse3DI	GCAATG	1 cut(s)	540
Bse8I	GATNNNNATC	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	5 cut(s)	33, 93, 175, 199, 333
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	2 cut(s)	39, 130
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	491, 757
BshFI	GGCC	3 cut(s)	92, 98, 629
BshNI	GGYRCC	1 cut(s)	353
BsiHKCI	CYCGRG	2 cut(s)	93, 386
BsiSI	CCGG	5 cut(s)	63, 94, 124, 130, 346
BslI	CCNNNNNNNGG	2 cut(s)	39, 130
BsnI	GGCC	3 cut(s)	92, 98, 629
BsoBI	CYCGRG	2 cut(s)	93, 386
Bsp120I	GGGCCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp13I	TCCGGA	1 cut(s)	123
Bsp143I	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
BspACI	CCGC	5 cut(s)	71, 77, 80, 150, 154
BspANI	GGCC	3 cut(s)	92, 98, 629
BspCNI	CTCAG	1 cut(s)	436
BspEI	TCCGGA	1 cut(s)	123
BspLI	GGNNCC	7 cut(s)	91, 92, 108, 128, 355, 540, 863
BspPI	GGATC	7 cut(s)	25, 50, 190, 264, 533, 546, 744
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	540
BssECI	CCNNGG	5 cut(s)	33, 93, 175, 199, 333
BssMI	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	353, 639, 809
Bst6I	CTCTTC	1 cut(s)	726
BstAFI	CTTAAG	1 cut(s)	749
BstC8I	GCNNGC	3 cut(s)	154, 182, 477
BstDEI	CTNAG	2 cut(s)	444, 870
BstF5I	GGATG	1 cut(s)	430
BstKTI	GATC	6 cut(s)	20, 45, 198, 259, 541, 739
BstMBI	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
BstMWI	GCNNNNNNNGC	7 cut(s)	68, 77, 89, 158, 242, 476, 488
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	4 cut(s)	92, 93, 129, 174
BstSLI	GKGCMC	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	491, 757
BstX2I	RGATCY	4 cut(s)	17, 195, 538, 736
BstYI	RGATCY	4 cut(s)	17, 195, 538, 736
BsuRI	GGCC	3 cut(s)	92, 98, 629
BtrI	CACGTC	1 cut(s)	513
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	2 cut(s)	498, 501
BtsIMutI	CAGTG	2 cut(s)	498, 501
Cac8I	GCNNGC	3 cut(s)	154, 182, 477
Cfr13I	GGNCC	5 cut(s)	90, 91, 96, 107, 754
Cfr9I	CCCGGG	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	249, 354
CviAII	CATG	5 cut(s)	39, 211, 225, 260, 797
CviQI	GTAC	2 cut(s)	249, 354
DdeI	CTNAG	2 cut(s)	444, 870
DpnI	GATC	6 cut(s)	19, 44, 197, 258, 540, 738
DpnII	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	107, 754
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	2 cut(s)	93, 386
EcoO109I	RGGNCCY	2 cut(s)	90, 754
EcoRI	GAATTC	1 cut(s)	663
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	5 cut(s)	42, 214, 228, 263, 800
FatI	CATG	5 cut(s)	38, 210, 224, 259, 796
FauI	CCCGC	2 cut(s)	157, 161
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	4 cut(s)	78, 81, 480, 746
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	94
Fsp4HI	GCNGC	4 cut(s)	78, 81, 480, 746
FspBI	CTAG	3 cut(s)	114, 242, 728
GluI	GCNGC	4 cut(s)	78, 81, 480, 746
GsuI	CTGGAG	2 cut(s)	468, 761
HaeIII	GGCC	3 cut(s)	92, 98, 629
HapII	CCGG	5 cut(s)	63, 94, 124, 130, 346
Hin1II	CATG	5 cut(s)	42, 214, 228, 263, 800
HincII	GTYRAC	2 cut(s)	793, 814
HindII	GTYRAC	2 cut(s)	793, 814
HindIII	AAGCTT	1 cut(s)	468
HinfI	GANTC	6 cut(s)	54, 214, 289, 338, 604, 842
HpaII	CCGG	5 cut(s)	63, 94, 124, 130, 346
HphI	GGTGA	2 cut(s)	574, 793
Hpy166II	GTNNAC	3 cut(s)	49, 793, 814
Hpy188I	TCNGA	7 cut(s)	111, 195, 219, 337, 370, 669, 849
Hpy188III	TCNNGA	8 cut(s)	15, 124, 293, 388, 485, 621, 701, 740
Hpy8I	GTNNAC	3 cut(s)	49, 793, 814
Hpy99I	CGWCG	3 cut(s)	10, 13, 62
HpyAV	CCTTC	1 cut(s)	772
HpyCH4III	ACNGT	3 cut(s)	353, 639, 809
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	4 cut(s)	475, 491, 533, 724
HpyF10VI	GCNNNNNNNGC	7 cut(s)	68, 77, 89, 158, 242, 476, 488
HpyF3I	CTNAG	2 cut(s)	444, 870
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	5 cut(s)	42, 214, 228, 263, 800
Kpn2I	TCCGGA	1 cut(s)	123
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
LmnI	GCTCC	4 cut(s)	126, 314, 487, 742
Lsp1109I	GCAGC	2 cut(s)	491, 757
LweI	GCATC	2 cut(s)	478, 520
MaeI	CTAG	3 cut(s)	114, 242, 728
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	6 cut(s)	19, 44, 197, 258, 540, 738
MboI	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
MboII	GAAGA	6 cut(s)	156, 298, 403, 539, 743, 836
MfeI	CAATTG	2 cut(s)	84, 375
MflI	RGATCY	4 cut(s)	17, 195, 538, 736
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	4 cut(s)	84, 375, 459, 663
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	197, 209, 343, 441, 727, 793
MroI	TCCGGA	1 cut(s)	123
MseI	TTAA	5 cut(s)	465, 518, 612, 750, 786
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	5 cut(s)	63, 94, 124, 130, 346
MspR9I	CCNGG	4 cut(s)	94, 95, 131, 176
MunI	CAATTG	2 cut(s)	84, 375
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	7 cut(s)	68, 77, 89, 158, 242, 476, 488
NciI	CCSGG	3 cut(s)	94, 95, 131
NdeII	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
NlaIII	CATG	5 cut(s)	42, 214, 228, 263, 800
NlaIV	GGNNCC	7 cut(s)	91, 92, 108, 128, 355, 540, 863
NmeAIII	GCCGAG	1 cut(s)	180
NmuCI	GTSAC	1 cut(s)	508
PaeR7I	CTCGAG	1 cut(s)	386
PfeI	GAWTC	6 cut(s)	54, 214, 289, 338, 604, 842
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	79, 82, 481, 747
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	7 cut(s)	91, 92, 108, 128, 355, 540, 863
PspOMI	GGGCCC	1 cut(s)	90
PspPI	GGNCC	5 cut(s)	90, 91, 96, 107, 754
PspPPI	RGGWCCY	1 cut(s)	754
PsuI	RGATCY	4 cut(s)	17, 195, 538, 736
RsaI	GTAC	2 cut(s)	250, 355
RsaNI	GTAC	2 cut(s)	249, 354
SalI	GTCGAC	1 cut(s)	791
SaqAI	TTAA	5 cut(s)	465, 518, 612, 750, 786
SatI	GCNGC	4 cut(s)	78, 81, 480, 746
Sau3AI	GATC	6 cut(s)	17, 42, 195, 256, 538, 736
Sau96I	GGNCC	5 cut(s)	90, 91, 96, 107, 754
ScrFI	CCNGG	4 cut(s)	94, 95, 131, 176
SduI	GDGCHC	1 cut(s)	94
SfaNI	GCATC	2 cut(s)	478, 520
Sfr274I	CTCGAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	107, 754
SlaI	CTCGAG	1 cut(s)	386
SmaI	CCCGGG	1 cut(s)	95
SmlI	CTYRAG	2 cut(s)	386, 749
SmoI	CTYRAG	2 cut(s)	386, 749
SrfI	GCCCGGGC	1 cut(s)	95
Sse9I	AATT	4 cut(s)	84, 375, 459, 663
SsiI	CCGC	5 cut(s)	71, 77, 80, 150, 154
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	3 cut(s)	114, 242, 728
StyD4I	CCNGG	4 cut(s)	92, 93, 129, 174
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	353, 639, 809
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	4 cut(s)	292, 387, 547, 792
TasI	AATT	4 cut(s)	84, 375, 459, 663
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	2 cut(s)	80, 83
TfiI	GAWTC	6 cut(s)	54, 214, 289, 338, 604, 842
Tru1I	TTAA	5 cut(s)	465, 518, 612, 750, 786
Tru9I	TTAA	5 cut(s)	465, 518, 612, 750, 786
TscAI	CASTG	2 cut(s)	498, 508
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	2 cut(s)	479, 745
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	3 cut(s)	441, 644, 791
TspGWI	ACGGA	1 cut(s)	66
TspMI	CCCGGG	1 cut(s)	93
TspRI	CASTG	2 cut(s)	498, 508
Van91I	CCANNNNNTGG	1 cut(s)	39
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	107, 754
XapI	RAATTY	1 cut(s)	663
XhoI	CTCGAG	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	792
XspI	CTAG	3 cut(s)	114, 242, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.