Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Forward (+)

89427664 .. 89431338

Gene Structure 3675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAGAGGCTCATCTTCCACACCATCTAGCTCGGACGGTACCACCCGTTCATGGATAATTGCCGGAGCGGCTGTGGCGGCAGCGACGGCAGCGTACGCGGTGGTTTCAAGGCGGCGATCGGCGAATTTTCGGAGCCGGGTGGTCGGAATCATACCTGCGCGTTTCGCTTCCTCCAGATTTCCCGGAAAACCTCTGGTTCCGATTCTCGGAAAGCCCATGATCCAGAGGACATGGGAAAGAGCAAAACTTGCAAACAAGCTGGATCAACTTGTTGTGGCGACTGATGATAAGAAAATAGCAGCATGCTGTTCAGATTTTGGAGCTAATGTCATAATGACATCAGAAACTTGCAGAAATGGAACTGAACGCTGCACTGAGGCTCTCCAAAAGCTTACGAAGAAGTTTGACATCGTTGTTAACATTCAGGGTGATGAACCTCTTATAGAGCCCGAGATAATAGATGGGGTTGTCATGGCCCTGCAGGCTGCCTCTGATGCTGTGTTTAGCACTGCAGTTACCTCATTGAAACCTGAAGATGCCTCTGATCCAAATCGGAGCTATGATACGAAGTTCTTAAGGATATATCCAGAGCTTCTGCCTACTCCATTACAACTAGAAGAAGATTTGGAGCAGCTTAAGGTGCTTGAGAATGGATATAAGATGAAGGTAATAAAGGTTGATCATGAGGCTCACGGTGTTGATACTCCACAAGATGTACAGAAGATAGAATGTTTCATGCGGGAAAGAAATTTGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

252

Amino Acids

27.67

Weight (kDa)

7.59

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_3	PF02348	48 - 184	1.1e-39	Cytidylyltransferase
NTP_transf_3	PF12804	57 - 168	2.6e-09	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	68
AccII	CGCG	2 cut(s)	98, 160
AciI	CCGC	5 cut(s)	68, 77, 98, 112, 739
AclWI	GGATC	3 cut(s)	214, 270, 539
AcsI	RAATTY	2 cut(s)	124, 748
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	3 cut(s)	40, 95, 717
AfiI	CCNNNNNNNGG	2 cut(s)	51, 206
AflII	CTTAAG	2 cut(s)	574, 635
AgsI	TTSAA	2 cut(s)	108, 526
AluBI	AGCT	7 cut(s)	30, 259, 323, 391, 558, 592, 634
AluI	AGCT	7 cut(s)	30, 259, 323, 391, 558, 592, 634
AlwI	GGATC	3 cut(s)	214, 270, 539
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	474
ApeKI	GCWGC	6 cut(s)	80, 89, 299, 369, 485, 631
ApoI	RAATTY	2 cut(s)	124, 748
Asp718I	GGTACC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	2 cut(s)	137, 183
AsuHPI	GGTGA	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	450
BbvI	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 643
BccI	CCATC	2 cut(s)	31, 455
BceAI	ACGGC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	679
BcnI	CCSGG	2 cut(s)	137, 183
BfaI	CTAG	2 cut(s)	27, 614
BfmI	CTRYAG	2 cut(s)	479, 510
BfrI	CTTAAG	2 cut(s)	574, 635
BfuAI	ACCTGC	1 cut(s)	163
BglI	GCCNNNNNGGC	2 cut(s)	68, 482
BisI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 632
BlsI	GCNGC	9 cut(s)	70, 79, 82, 91, 114, 301, 371, 487, 633
Bme1390I	CCNGG	2 cut(s)	137, 183
BmeT110I	CYCGRG	1 cut(s)	449
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	3 cut(s)	40, 134, 198
BmrFI	CCNGG	2 cut(s)	137, 183
BmsI	GCATC	2 cut(s)	484, 526
BpmI	CTGGAG	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	2 cut(s)	137, 183
BsaBI	GATNNNNATC	1 cut(s)	549
BsaXI	ACNNNNNCTCC	4 cut(s)	57, 87, 312, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 206
Bse8I	GATNNNNATC	1 cut(s)	549
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	2 cut(s)	51, 206
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 643
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	98, 160
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	476
BshNI	GGYRCC	1 cut(s)	38
BsiEI	CGRYCG	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	449
BsiSI	CCGG	3 cut(s)	63, 136, 183
BsiWI	CGTACG	1 cut(s)	93
BslI	CCNNNNNNNGG	2 cut(s)	51, 206
BsnI	GGCC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp1407I	TGTACA	1 cut(s)	715
Bsp143I	GATC	5 cut(s)	116, 219, 262, 544, 679
BspACI	CCGC	5 cut(s)	68, 77, 98, 112, 739
BspANI	GGCC	1 cut(s)	476
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	2 cut(s)	98, 160
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	3 cut(s)	40, 134, 198
BspMAI	CTGCAG	2 cut(s)	483, 514
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	3 cut(s)	214, 270, 539
BspT107I	GGYRCC	1 cut(s)	38
BspTI	CTTAAG	2 cut(s)	574, 635
BsrBI	CCGCTC	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	715
BssMI	GATC	5 cut(s)	116, 219, 262, 544, 679
Bst4CI	ACNGT	2 cut(s)	38, 695
BstAFI	CTTAAG	2 cut(s)	574, 635
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	304, 483
BstDEI	CTNAG	2 cut(s)	375, 756
BstFNI	CGCG	2 cut(s)	98, 160
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	5 cut(s)	119, 222, 265, 547, 682
BstMBI	GATC	5 cut(s)	116, 219, 262, 544, 679
BstMCI	CGRYCG	1 cut(s)	119
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	135, 181
BstSFI	CTRYAG	2 cut(s)	479, 510
BstUI	CGCG	2 cut(s)	98, 160
BstV1I	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 643
BsuRI	GGCC	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	2 cut(s)	372, 507
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	304, 483
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	3 cut(s)	39, 94, 716
CviAII	CATG	7 cut(s)	51, 217, 231, 303, 472, 683, 736
CviQI	GTAC	3 cut(s)	39, 94, 716
DdeI	CTNAG	2 cut(s)	375, 756
DpnI	GATC	5 cut(s)	118, 221, 264, 546, 681
DpnII	GATC	5 cut(s)	116, 219, 262, 544, 679
Eco24I	GRGCYC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	450
FaeI	CATG	7 cut(s)	54, 220, 234, 306, 475, 686, 739
FatI	CATG	7 cut(s)	50, 216, 230, 302, 471, 682, 735
FauI	CCCGC	1 cut(s)	732
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 632
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 632
FspBI	CTAG	2 cut(s)	27, 614
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 632
GsuI	CTGGAG	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	476
HapII	CCGG	3 cut(s)	63, 136, 183
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	7 cut(s)	54, 220, 234, 306, 475, 686, 739
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	2 cut(s)	147, 202
HpaI	GTTAAC	1 cut(s)	418
HpaII	CCGG	3 cut(s)	63, 136, 183
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188III	TCNNGA	4 cut(s)	174, 223, 587, 683
Hpy8I	GTNNAC	1 cut(s)	418
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	2 cut(s)	38, 695
HpyCH4V	TGCA	5 cut(s)	251, 351, 372, 481, 512
HpyF3I	CTNAG	2 cut(s)	375, 756
Hsp92II	CATG	7 cut(s)	54, 220, 234, 306, 475, 686, 739
HspAI	GCGC	1 cut(s)	158
KpnI	GGTACC	1 cut(s)	42
Ksp22I	TGATCA	1 cut(s)	679
KspAI	GTTAAC	1 cut(s)	418
Kzo9I	GATC	5 cut(s)	116, 219, 262, 544, 679
LmnI	GCTCC	5 cut(s)	65, 132, 320, 555, 628
Lsp1109I	GCAGC	6 cut(s)	92, 101, 311, 356, 472, 643
LweI	GCATC	2 cut(s)	484, 526
MaeI	CTAG	2 cut(s)	27, 614
MaeIII	GTNAC	1 cut(s)	514
MalI	GATC	5 cut(s)	118, 221, 264, 546, 681
MbiI	CCGCTC	1 cut(s)	68
MboI	GATC	5 cut(s)	116, 219, 262, 544, 679
MboII	GAAGA	6 cut(s)	6, 409, 545, 629, 632, 733
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	3 cut(s)	57, 124, 748
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	9 cut(s)	181, 201, 219, 370, 447, 499, 529, 550, 679
MseI	TTAA	3 cut(s)	417, 575, 636
MspCI	CTTAAG	2 cut(s)	574, 635
MspI	CCGG	3 cut(s)	63, 136, 183
MspR9I	CCNGG	2 cut(s)	137, 183
MvnI	CGCG	2 cut(s)	98, 160
NciI	CCSGG	2 cut(s)	137, 183
NdeII	GATC	5 cut(s)	116, 219, 262, 544, 679
NlaIII	CATG	7 cut(s)	54, 220, 234, 306, 475, 686, 739
NlaIV	GGNNCC	3 cut(s)	40, 134, 198
NspI	RCATGY	1 cut(s)	306
PaeI	GCATGC	1 cut(s)	306
PagI	TCATGA	1 cut(s)	682
PfeI	GAWTC	2 cut(s)	147, 202
Pfl23II	CGTACG	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	181
PkrI	GCNGC	9 cut(s)	70, 79, 82, 91, 114, 301, 371, 487, 633
Ple19I	CGATCG	1 cut(s)	119
PspLI	CGTACG	1 cut(s)	93
PspN4I	GGNNCC	3 cut(s)	40, 134, 198
PspPI	GGNCC	1 cut(s)	475
PsrI	GAACNNNNNNTAC	2 cut(s)	31, 63
PstI	CTGCAG	2 cut(s)	483, 514
PvuI	CGATCG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	40, 95, 717
RsaNI	GTAC	3 cut(s)	39, 94, 716
SaqAI	TTAA	3 cut(s)	417, 575, 636
SatI	GCNGC	9 cut(s)	69, 78, 81, 90, 113, 300, 370, 486, 632
Sau3AI	GATC	5 cut(s)	116, 219, 262, 544, 679
Sau96I	GGNCC	1 cut(s)	475
SbfI	CCTGCAGG	1 cut(s)	483
ScrFI	CCNGG	2 cut(s)	137, 183
SdaI	CCTGCAGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	484, 526
SfcI	CTRYAG	2 cut(s)	479, 510
SmlI	CTYRAG	3 cut(s)	574, 635, 644
SmoI	CTYRAG	3 cut(s)	574, 635, 644
SphI	GCATGC	1 cut(s)	306
Sse8387I	CCTGCAGG	1 cut(s)	483
Sse9I	AATT	3 cut(s)	57, 124, 748
SsiI	CCGC	5 cut(s)	68, 77, 98, 112, 739
SspMI	CTAG	2 cut(s)	27, 614
StyD4I	CCNGG	2 cut(s)	135, 181
TaaI	ACNGT	2 cut(s)	38, 695
TasI	AATT	3 cut(s)	57, 124, 748
TatI	WGTACW	1 cut(s)	715
TauI	GCSGC	3 cut(s)	71, 80, 115
TfiI	GAWTC	2 cut(s)	147, 202
Tru1I	TTAA	3 cut(s)	417, 575, 636
Tru9I	TTAA	3 cut(s)	417, 575, 636
TscAI	CASTG	2 cut(s)	379, 514
TseI	GCWGC	6 cut(s)	80, 89, 299, 369, 485, 631
TspDTI	ATGAA	4 cut(s)	39, 447, 677, 724
TspRI	CASTG	2 cut(s)	379, 514
Vha464I	CTTAAG	2 cut(s)	574, 635
XapI	RAATTY	2 cut(s)	124, 748
XceI	RCATGY	1 cut(s)	306
XspI	CTAG	2 cut(s)	27, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.