Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004144

Physical Location & Seq

Genomic Coordinates Reverse (-)

28353137 .. 28356053

Gene Structure 2917 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAACCCCAAATCACTTTGCTCTTCTTCTTCTTCCTCTTCCTCATCCTCATCATTGTCATCCGGGTCTTGGAACAGCTCCAAGGTATGGATCATCCACGGAATCGTCGCCGGAGTCGCAATTGCGGCGGCGATCGGCGCCCGGGTCTACCTTGGCCCGGTTAAGAAGTTCCGGAGCCGGGTCGTCGGCATCATACCCGCCCGTTTTGCTTCGTCGCGGTTTGAGGGGAAGCCTCTTGTTCAGATCCTCGGAAAGCCCATGATCCAGAGAACATGGGAAAGGGCAAAGCTGGCAACTACATTGGATCATATTGTTGTGGCGACGGATGATGAGAAGATAGCAGAATGCTGTAGAAGTTTTGGCGCTGATGTCATAATGACCTCAGAGTCTTGCGCTAATGGTACTGAGCGTTGTTATGAAGCTATTCAGAAGCTTGAGAAGAAGTATGATGTAGTTGTCAATATTCAGGGGGATGAGCCTCTTGTTGAACCAGAGATAATAGATGGGATTGTTAAAGCTCTGCAGGAAGCCCCAGATGCAGTGTTTAGCACCGCAGTCACGTCTTTAAAACTTGAAGATGTATTTGATCCGAATCGAGTGAAATGTGTGGTGGATGATAATGGTTATGCTATCTATTTTTCAAGGGGGCTGATTCCATTTAACAAGTCAGGCAAGGCCAATCCACAGTTTCCATACATGCTCCATCTAGGAATTCAGAGCTATGATACAAAGTTTCTAAAGATATATCGGGAGCTGAAGCCCACCCCTTTGCAACTAGAAGAGGATCTGGAGCAGCTTAAAGTTCTTGAAAATGGTTATAAAATGAAGGTGATTAAGGTTGACCATGATGCTCATGGTGTCGACACCCCCGAAGATGTTGAGAAGATAGAAGCTTTAATGCGTGAGCTAAACATGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008690 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019867 GO:0022414 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0033467 GO:0033468 GO:0034641 GO:0034654 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046483 GO:0048229 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0055086 GO:0060560 GO:0070567 GO:0071704 GO:0071840 GO:0098573 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

CTP_transf_3

Protein Analysis

307

Amino Acids

33.8

Weight (kDa)

6.03

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_3	PF02348	62 - 274	5.6e-62	Cytidylyltransferase
NTP_transf_3	PF12804	71 - 182	6.7e-11	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53000 AT1G53000
fragaria_vesca	FvH4_3g20180 FvH4_3g20180 FvH4_3g20180
malus_domestica	MD03G1226400.v1.1 MD11G1244700.v1.1
prunus_persica	Prupe.4G047000_v2.0.a1 Prupe.4G047000_v2.0.a1 Prupe.4G183000_v2.0.a1 Prupe.4G183000_v2.0.a1
pyrus_communis	pycom03g17410 pycom11g21680
rosa_chinensis	RchiOBHm_Chr5g0008351 RchiOBHm_Chr5g0033991
rosa_laevigata	RLG00000033517
rosa_multiflora	Rmu_sc0012341.1_g000007 Rmu_sc0014753.1_g000003 Rmu_sc0021840.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046240 Rroxscaffold_1G00068140
rosa_rugosa	Rorug04G0435400 Rorug04G0435400 Rorug05G0144000
rosa_samantha	Rh5AG063900 Rh5AG234900 Rh5BG060800 Rh5BG235700 Rh5CG070800 Rh5CG265500 Rh5DG059800
rosa_wichuraiana	Rw5G005710 Rw5G021470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	819
AasI	GACNNNNNNGTC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccI	GTMKAC	2 cut(s)	147, 861
AccII	CGCG	1 cut(s)	217
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	5 cut(s)	125, 128, 198, 217, 552
AclWI	GGATC	6 cut(s)	98, 238, 256, 312, 581, 792
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	138
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	4 cut(s)	69, 87, 157, 178
AflIII	ACRYGT	1 cut(s)	912
AgsI	TTSAA	4 cut(s)	488, 575, 642, 809
AjiI	CACGTC	1 cut(s)	561
AlwI	GGATC	6 cut(s)	98, 238, 256, 312, 581, 792
Ama87I	CYCGRG	1 cut(s)	141
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	2 cut(s)	154, 675
ApeKI	GCWGC	1 cut(s)	793
ApoI	RAATTY	1 cut(s)	711
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	3 cut(s)	140, 365, 395
AspS9I	GGNCC	1 cut(s)	155
AsuC2I	CCSGG	5 cut(s)	64, 142, 143, 158, 179
AsuHPI	GGTGA	1 cut(s)	841
AvaI	CYCGRG	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	2 cut(s)	497, 711
BcnI	CCSGG	5 cut(s)	64, 142, 143, 158, 179
BfaI	CTAG	2 cut(s)	707, 776
BfmI	CTRYAG	2 cut(s)	349, 521
BfoI	RGCGCY	2 cut(s)	141, 366
BisI	GCNGC	3 cut(s)	126, 129, 794
BlsI	GCNGC	3 cut(s)	127, 130, 795
Bme1390I	CCNGG	5 cut(s)	64, 142, 143, 158, 179
BmeT110I	CYCGRG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	139, 176
BmrFI	CCNGG	5 cut(s)	64, 142, 143, 158, 179
BmsI	GCATC	3 cut(s)	198, 526, 838
BpmI	CTGGAG	1 cut(s)	809
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	5 cut(s)	64, 142, 143, 158, 179
BsaBI	GATNNNNATC	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	5 cut(s)	81, 97, 141, 151, 247
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	4 cut(s)	69, 87, 157, 178
Bse8I	GATNNNNATC	1 cut(s)	591
BseAI	TCCGGA	1 cut(s)	171
BseDI	CCNNGG	5 cut(s)	81, 97, 141, 151, 247
BseGI	GGATG	6 cut(s)	44, 59, 93, 331, 478, 619
BseJI	GATNNNNATC	1 cut(s)	591
BseLI	CCNNNNNNNGG	4 cut(s)	69, 87, 157, 178
BseMII	CTCAG	2 cut(s)	396, 396
BseXI	GCAGC	1 cut(s)	805
Bsh1236I	CGCG	1 cut(s)	217
Bsh1285I	CGRYCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	156, 677
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	135
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	6 cut(s)	63, 111, 142, 158, 172, 178
BslI	CCNNNNNNNGG	4 cut(s)	69, 87, 157, 178
BsmI	GAATGC	1 cut(s)	350
BsnI	GGCC	2 cut(s)	156, 677
BsoBI	CYCGRG	1 cut(s)	141
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
BspACI	CCGC	5 cut(s)	125, 128, 198, 217, 552
BspANI	GGCC	2 cut(s)	156, 677
BspCNI	CTCAG	2 cut(s)	395, 397
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	139, 176
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	6 cut(s)	98, 238, 256, 312, 581, 792
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	137
BssECI	CCNNGG	5 cut(s)	81, 97, 141, 151, 247
BssMI	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	2 cut(s)	81, 151
Bst4CI	ACNGT	1 cut(s)	687
Bst6I	CTCTTC	3 cut(s)	28, 43, 774
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	382, 405
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	6 cut(s)	44, 59, 93, 331, 478, 619
BstFNI	CGCG	1 cut(s)	217
BstH2I	RGCGCY	2 cut(s)	141, 366
BstHHI	GCGC	3 cut(s)	140, 365, 395
BstKTI	GATC	7 cut(s)	93, 135, 246, 264, 307, 589, 787
BstMBI	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
BstMCI	CGRYCG	1 cut(s)	135
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 125, 137, 206, 290, 536
BstNSI	RCATGY	2 cut(s)	700, 916
BstSCI	CCNGG	5 cut(s)	62, 140, 141, 156, 177
BstSFI	CTRYAG	2 cut(s)	349, 521
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	805
BstX2I	RGATCY	2 cut(s)	243, 784
BstYI	RGATCY	2 cut(s)	243, 784
BsuRI	GGCC	2 cut(s)	156, 677
BtgI	CCRYGG	1 cut(s)	97
BtrI	CACGTC	1 cut(s)	561
BtsCI	GGATG	6 cut(s)	44, 59, 93, 331, 478, 619
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	3 cut(s)	140, 365, 395
Cfr13I	GGNCC	1 cut(s)	155
Cfr9I	CCCGGG	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	6 cut(s)	259, 273, 697, 845, 854, 913
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	382, 405
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	7 cut(s)	92, 134, 245, 263, 306, 588, 786
DpnII	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
DraI	TTTAAA	1 cut(s)	567
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
Eam1104I	CTCTTC	3 cut(s)	28, 43, 774
EarI	CTCTTC	3 cut(s)	28, 43, 774
Eco130I	CCWWGG	2 cut(s)	81, 151
Eco57I	CTGAAG	1 cut(s)	776
Eco88I	CYCGRG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	711
EcoT14I	CCWWGG	2 cut(s)	81, 151
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	2 cut(s)	81, 151
FaeI	CATG	6 cut(s)	262, 276, 700, 848, 857, 916
FatI	CATG	6 cut(s)	258, 272, 696, 844, 853, 912
FauI	CCCGC	1 cut(s)	205
FblI	GTMKAC	2 cut(s)	147, 861
Fnu4HI	GCNGC	3 cut(s)	126, 129, 794
FokI	GGATG	6 cut(s)	31, 46, 80, 338, 485, 626
Fsp4HI	GCNGC	3 cut(s)	126, 129, 794
FspBI	CTAG	2 cut(s)	707, 776
GlaI	GCGC	3 cut(s)	139, 364, 394
GluI	GCNGC	3 cut(s)	126, 129, 794
GsuI	CTGGAG	1 cut(s)	809
HaeII	RGCGCY	2 cut(s)	141, 366
HaeIII	GGCC	2 cut(s)	156, 677
HapII	CCGG	6 cut(s)	63, 111, 142, 158, 172, 178
HhaI	GCGC	3 cut(s)	140, 365, 395
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	6 cut(s)	262, 276, 700, 848, 857, 916
Hin6I	GCGC	3 cut(s)	138, 363, 393
HinP1I	GCGC	3 cut(s)	138, 363, 393
HincII	GTYRAC	2 cut(s)	841, 862
HindII	GTYRAC	2 cut(s)	841, 862
HindIII	AAGCTT	2 cut(s)	431, 891
HinfI	GANTC	5 cut(s)	102, 114, 386, 592, 652
HpaII	CCGG	6 cut(s)	63, 111, 142, 158, 172, 178
HphI	GGTGA	1 cut(s)	841
Hpy166II	GTNNAC	3 cut(s)	148, 841, 862
Hpy188I	TCNGA	6 cut(s)	243, 251, 385, 429, 591, 717
Hpy188III	TCNNGA	5 cut(s)	172, 265, 749, 788, 806
Hpy8I	GTNNAC	3 cut(s)	148, 841, 862
Hpy99I	CGWCG	4 cut(s)	110, 188, 217, 325
HpyAV	CCTTC	1 cut(s)	820
HpyCH4III	ACNGT	1 cut(s)	687
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	3 cut(s)	523, 539, 772
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 125, 137, 206, 290, 536
HpyF3I	CTNAG	2 cut(s)	382, 405
HpySE526I	ACGT	1 cut(s)	560
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	262, 276, 700, 848, 857, 916
HspAI	GCGC	3 cut(s)	138, 363, 393
KasI	GGCGCC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	5 cut(s)	83, 174, 705, 751, 790
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	3 cut(s)	198, 526, 838
MaeI	CTAG	2 cut(s)	707, 776
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	7 cut(s)	92, 134, 245, 263, 306, 588, 786
MboI	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
MfeI	CAATTG	1 cut(s)	120
MflI	RGATCY	2 cut(s)	243, 784
MluCI	AATT	2 cut(s)	120, 711
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	2 cut(s)	123, 395
MnlI	CCTC	9 cut(s)	46, 52, 58, 217, 243, 257, 391, 489, 775
MroI	TCCGGA	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	7 cut(s)	162, 513, 566, 660, 798, 834, 896
MspI	CCGG	6 cut(s)	63, 111, 142, 158, 172, 178
MspR9I	CCNGG	5 cut(s)	64, 142, 143, 158, 179
MunI	CAATTG	1 cut(s)	120
Mva1269I	GAATGC	1 cut(s)	350
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	6 cut(s)	116, 125, 137, 206, 290, 536
NarI	GGCGCC	1 cut(s)	138
NciI	CCSGG	5 cut(s)	64, 142, 143, 158, 179
NdeII	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
NlaIII	CATG	6 cut(s)	262, 276, 700, 848, 857, 916
NlaIV	GGNNCC	2 cut(s)	139, 176
NmuCI	GTSAC	1 cut(s)	556
NspI	RCATGY	2 cut(s)	700, 916
PciI	ACATGT	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	102, 592, 652
PflMI	CCANNNNNTGG	1 cut(s)	87
PkrI	GCNGC	3 cut(s)	127, 130, 795
Ple19I	CGATCG	1 cut(s)	135
PleI	GAGTC	2 cut(s)	122, 394
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	2 cut(s)	122, 394
PscI	ACATGT	1 cut(s)	912
PsiI	TTATAA	1 cut(s)	819
PspN4I	GGNNCC	2 cut(s)	139, 176
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	525
PsuI	RGATCY	2 cut(s)	243, 784
PvuI	CGATCG	1 cut(s)	135
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
SalI	GTCGAC	1 cut(s)	860
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	7 cut(s)	162, 513, 566, 660, 798, 834, 896
SatI	GCNGC	3 cut(s)	126, 129, 794
Sau3AI	GATC	7 cut(s)	90, 132, 243, 261, 304, 586, 784
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	2 cut(s)	123, 395
ScrFI	CCNGG	5 cut(s)	64, 142, 143, 158, 179
SfaNI	GCATC	3 cut(s)	198, 526, 838
SfcI	CTRYAG	2 cut(s)	349, 521
SfoI	GGCGCC	1 cut(s)	139
SmaI	CCCGGG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	120, 711
SsiI	CCGC	5 cut(s)	125, 128, 198, 217, 552
SspDI	GGCGCC	1 cut(s)	137
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	707, 776
StyD4I	CCNGG	5 cut(s)	62, 140, 141, 156, 177
StyI	CCWWGG	2 cut(s)	81, 151
TaaI	ACNGT	1 cut(s)	687
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	2 cut(s)	595, 861
TasI	AATT	2 cut(s)	120, 711
TauI	GCSGC	2 cut(s)	128, 131
TfiI	GAWTC	3 cut(s)	102, 592, 652
Tru1I	TTAA	7 cut(s)	162, 513, 566, 660, 798, 834, 896
Tru9I	TTAA	7 cut(s)	162, 513, 566, 660, 798, 834, 896
TscAI	CASTG	1 cut(s)	546
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	1 cut(s)	793
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	17, 432, 839
TspGWI	ACGGA	2 cut(s)	114, 338
TspMI	CCCGGG	1 cut(s)	141
TspRI	CASTG	1 cut(s)	546
Van91I	CCANNNNNTGG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	711
XceI	RCATGY	2 cut(s)	700, 916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	851
XmaI	CCCGGG	1 cut(s)	141
XmiI	GTMKAC	2 cut(s)	147, 861
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	2 cut(s)	707, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.