FvH4_3g20180

3-deoxy-manno-octulosonate cytidylyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
13258722 .. 13262291
3570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20180.t3

Sequence Viewer

Length: 906 bp
ATGAACCTCAAATCCGTTCGCCCTTCTTCTTCGTCCTCTTCCTCCTCATCATCCGGGTCCACCGCCAAGGTATGGATCGTCCACGGACTCGTCGCCGGAGTTGCCATTGCCGCGGCCATTGGCGCCAGGGCCTACCTGGGCCCAATTAGGAAGTTCCGGAGCCGGGTTGTCGGCATCATACCCGCCCGTTATGCTTCGTCAAGGTTTCAGGGGAAGCCTCTCGTTCAGATCCTCGGAAAGCCCATGATCCAGAGAACATGGGAGAGGGCGAAAATGGCATCTACATTGGATCATATTGTTGTGGCGACGGATGATGAGAAGATAGCAGAATGCTGTAGAAGTTTTGGAGCTGATGTCATAATGACCTCAGAGTCATGCCCTAATGGCACTGAGCGTTGTTATGAAGCCATTCAAAAGCTTGAGAAGAAGTATGATGTAGTTGTCAATATTCAGGGAGATGAGCCTCTTGTTGAACCAGAGATAATAGATGGGATTGTTAAAGCTCTGCAGGAAGCCCCGGATGCAGTGTTTAGCACCGCAGTCACGTCCTTAAAACTTGAAGATGCATCTGATCCGAATCGAGTGAAATGTGTGGTGGATAATAATGGTTATGCCATCTATTTTTCAAGGGGGCTGATCCCATTTAACAAGTCAGGCAAGGCCAATCCGCAGTTTCCATATATGCTCCATCTAGGAATTCAGAGCTATGATACAAAGTTTCTAAAGATATATCGAGAGCTGAAGCCCACTCCTTTGCAACTAGAAGAAGATCTGGAGCAGCTTAAAGTCCTTGAAAATGGTTATAGAATGAAGGTGATCAAGGTCGACCATGAGGCTCATGGTGTTGACACCCCTGAAGATGTTGAGAAGATAGAAGCTTTAATGCGTGAGAGAAACATCTCCTAA

Protein Analysis

302

Amino Acids

33.3

Weight (kDa)

7.61

Isoelectric Point (pI)

36.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CTP_transf_3 PF02348 57 - 234 7.9e-53 Cytidylyltransferase
NTP_transf_3 PF12804 65 - 177 2.9e-11 MobA-like NTP transferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 72
AccI GTMKAC 1 cut(s) 825
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 6 cut(s) 63, 111, 113, 183, 537, 668
AclWI GGATC 6 cut(s) 83, 223, 241, 297, 566, 631
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 2 cut(s) 761, 876
AcyI GRCGYC 1 cut(s) 123
AfiI CCNNNNNNNGG 2 cut(s) 72, 163
AgsI TTSAA 5 cut(s) 413, 473, 560, 627, 794
AjiI CACGTC 1 cut(s) 546
AjnI CCWGG 2 cut(s) 125, 135
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 7 cut(s) 350, 418, 503, 705, 739, 781, 878
AluI AGCT 7 cut(s) 350, 418, 503, 705, 739, 781, 878
AlwI GGATC 6 cut(s) 83, 223, 241, 297, 566, 631
Aor13HI TCCGGA 1 cut(s) 156
AoxI GGCC 4 cut(s) 114, 129, 139, 660
ApaI GGGCCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 778
ApoI RAATTY 1 cut(s) 696
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 4 cut(s) 57, 129, 139, 140
AsuC2I CCSGG 3 cut(s) 55, 164, 518
AsuHPI GGTGA 1 cut(s) 826
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 790
BccI CCATC 3 cut(s) 482, 623, 696
BciT130I CCWGG 2 cut(s) 127, 137
BclI TGATCA 1 cut(s) 816
BcnI CCSGG 3 cut(s) 55, 164, 518
BfaI CTAG 2 cut(s) 692, 761
BfmI CTRYAG 2 cut(s) 334, 506
BfoI RGCGCY 1 cut(s) 126
BglI GCCNNNNNGGC 1 cut(s) 384
BglII AGATCT 1 cut(s) 769
BisI GCNGC 3 cut(s) 111, 114, 779
BlsI GCNGC 3 cut(s) 112, 115, 780
Bme1390I CCNGG 5 cut(s) 55, 127, 137, 164, 518
Bme18I GGWCC 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 546
BmgT120I GGNCC 4 cut(s) 57, 129, 139, 140
BmiI GGNNCC 4 cut(s) 58, 124, 141, 161
BmrFI CCNGG 5 cut(s) 55, 127, 137, 164, 518
BmsI GCATC 5 cut(s) 183, 287, 511, 553, 575
BpmI CTGGAG 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 3 cut(s) 55, 164, 518
BsaBI GATNNNNATC 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 7 cut(s) 66, 82, 111, 126, 136, 232, 516
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 163
Bse3DI GCAATG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 2 cut(s) 127, 137
BseDI CCNNGG 7 cut(s) 66, 82, 111, 126, 136, 232, 516
BseGI GGATG 3 cut(s) 50, 316, 526
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 2 cut(s) 72, 163
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 381, 381
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 790
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 4 cut(s) 116, 131, 141, 662
BshNI GGYRCC 1 cut(s) 122
BsiSI CCGG 5 cut(s) 54, 96, 157, 163, 518
BslI CCNNNNNNNGG 2 cut(s) 72, 163
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 4 cut(s) 116, 131, 141, 662
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 1 cut(s) 143
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
BspACI CCGC 6 cut(s) 63, 111, 113, 183, 537, 668
BspANI GGCC 4 cut(s) 116, 131, 141, 662
BspCNI CTCAG 2 cut(s) 380, 382
BspEI TCCGGA 1 cut(s) 156
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 4 cut(s) 58, 124, 141, 161
BspMAI CTGCAG 1 cut(s) 510
BspPI GGATC 6 cut(s) 83, 223, 241, 297, 566, 631
BspT107I GGYRCC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 105
BssECI CCNNGG 7 cut(s) 66, 82, 111, 126, 136, 232, 516
BssMI GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 2 cut(s) 127, 137
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 367, 390
BstDSI CCRYGG 2 cut(s) 82, 111
BstF5I GGATG 3 cut(s) 50, 316, 526
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 8 cut(s) 78, 231, 249, 292, 574, 639, 772, 819
BstMBI GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
BstMWI GCNNNNNNNGC 7 cut(s) 101, 110, 122, 191, 275, 384, 521
BstNI CCWGG 2 cut(s) 127, 137
BstSCI CCNGG 5 cut(s) 53, 125, 135, 162, 516
BstSFI CTRYAG 2 cut(s) 334, 506
BstSLI GKGCMC 1 cut(s) 143
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 790
BstX2I RGATCY 2 cut(s) 228, 769
BstYI RGATCY 2 cut(s) 228, 769
BsuRI GGCC 4 cut(s) 116, 131, 141, 662
BtgI CCRYGG 2 cut(s) 82, 111
BtrI CACGTC 1 cut(s) 546
BtsCI GGATG 3 cut(s) 50, 316, 526
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 2 cut(s) 387, 531
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 4 cut(s) 57, 129, 139, 140
Cfr42I CCGCGG 1 cut(s) 114
CviAII CATG 5 cut(s) 244, 258, 375, 830, 839
DdeI CTNAG 2 cut(s) 367, 390
DinI GGCGCC 1 cut(s) 124
DpnI GATC 8 cut(s) 77, 230, 248, 291, 573, 638, 771, 818
DpnII GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
DrdI GACNNNNNNGTC 1 cut(s) 370
DseDI GACNNNNNNGTC 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 761, 876
EcoO109I RGGNCCY 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 696
EcoRII CCWGG 2 cut(s) 125, 135
EcoT14I CCWWGG 1 cut(s) 66
EcoT22I ATGCAT 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 143
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 66
FaeI CATG 5 cut(s) 247, 261, 378, 833, 842
FatI CATG 5 cut(s) 243, 257, 374, 829, 838
FauI CCCGC 1 cut(s) 190
FbaI TGATCA 1 cut(s) 816
FblI GTMKAC 1 cut(s) 825
Fnu4HI GCNGC 3 cut(s) 111, 114, 779
FokI GGATG 3 cut(s) 37, 323, 533
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 111, 114, 779
FspBI CTAG 2 cut(s) 692, 761
GlaI GCGC 1 cut(s) 124
GluI GCNGC 3 cut(s) 111, 114, 779
GsuI CTGGAG 1 cut(s) 794
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 4 cut(s) 116, 131, 141, 662
HapII CCGG 5 cut(s) 54, 96, 157, 163, 518
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 5 cut(s) 247, 261, 378, 833, 842
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HincII GTYRAC 2 cut(s) 826, 847
HindII GTYRAC 2 cut(s) 826, 847
HindIII AAGCTT 2 cut(s) 416, 876
HinfI GANTC 3 cut(s) 87, 371, 577
HpaII CCGG 5 cut(s) 54, 96, 157, 163, 518
HphI GGTGA 1 cut(s) 826
Hpy166II GTNNAC 4 cut(s) 60, 82, 826, 847
Hpy188I TCNGA 6 cut(s) 228, 236, 370, 571, 576, 702
Hpy188III TCNNGA 4 cut(s) 157, 250, 734, 773
Hpy8I GTNNAC 4 cut(s) 60, 82, 826, 847
Hpy99I CGWCG 2 cut(s) 95, 310
HpyAV CCTTC 2 cut(s) 33, 805
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 4 cut(s) 508, 524, 566, 757
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 110, 122, 191, 275, 384, 521
HpyF3I CTNAG 2 cut(s) 367, 390
HpySE526I ACGT 1 cut(s) 545
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 5 cut(s) 247, 261, 378, 833, 842
HspAI GCGC 1 cut(s) 123
KasI GGCGCC 1 cut(s) 122
Kpn2I TCCGGA 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 816
KspI CCGCGG 1 cut(s) 114
Kzo9I GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
LmnI GCTCC 4 cut(s) 159, 347, 690, 775
Lsp1109I GCAGC 1 cut(s) 790
LweI GCATC 5 cut(s) 183, 287, 511, 553, 575
MaeI CTAG 2 cut(s) 692, 761
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 541
MalI GATC 8 cut(s) 77, 230, 248, 291, 573, 638, 771, 818
MboI GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
MflI RGATCY 2 cut(s) 228, 769
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 2 cut(s) 144, 696
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 2 cut(s) 81, 380
Mph1103I ATGCAT 1 cut(s) 568
MroI TCCGGA 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 5 cut(s) 498, 551, 645, 783, 881
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 5 cut(s) 54, 96, 157, 163, 518
MspR9I CCNGG 5 cut(s) 55, 127, 137, 164, 518
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 2 cut(s) 127, 137
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 7 cut(s) 101, 110, 122, 191, 275, 384, 521
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 3 cut(s) 55, 164, 518
NdeII GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
NlaIII CATG 5 cut(s) 247, 261, 378, 833, 842
NlaIV GGNNCC 4 cut(s) 58, 124, 141, 161
NmuCI GTSAC 1 cut(s) 541
NsiI ATGCAT 1 cut(s) 568
PctI GAATGC 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 577
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 3 cut(s) 112, 115, 780
PleI GAGTC 2 cut(s) 81, 379
PluTI GGCGCC 1 cut(s) 126
PpsI GAGTC 2 cut(s) 81, 379
Psp6I CCWGG 2 cut(s) 125, 135
PspGI CCWGG 2 cut(s) 125, 135
PspN4I GGNNCC 4 cut(s) 58, 124, 141, 161
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 4 cut(s) 57, 129, 139, 140
PstI CTGCAG 1 cut(s) 510
PsuI RGATCY 2 cut(s) 228, 769
SacII CCGCGG 1 cut(s) 114
SalI GTCGAC 1 cut(s) 824
SaqAI TTAA 5 cut(s) 498, 551, 645, 783, 881
SatI GCNGC 3 cut(s) 111, 114, 779
Sau3AI GATC 8 cut(s) 75, 228, 246, 289, 571, 636, 769, 816
Sau96I GGNCC 4 cut(s) 57, 129, 139, 140
SchI GAGTC 2 cut(s) 81, 380
ScrFI CCNGG 5 cut(s) 55, 127, 137, 164, 518
SduI GDGCHC 1 cut(s) 143
SfaNI GCATC 5 cut(s) 183, 287, 511, 553, 575
SfcI CTRYAG 2 cut(s) 334, 506
SfoI GGCGCC 1 cut(s) 124
Sfr303I CCGCGG 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 114
SinI GGWCC 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 2 cut(s) 144, 696
SsiI CCGC 6 cut(s) 63, 111, 113, 183, 537, 668
SspDI GGCGCC 1 cut(s) 122
SspI AATATT 1 cut(s) 448
SspMI CTAG 2 cut(s) 692, 761
StyD4I CCNGG 5 cut(s) 53, 125, 135, 162, 516
StyI CCWWGG 1 cut(s) 66
TaiI ACGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 580, 733, 825
TasI AATT 2 cut(s) 144, 696
TauI GCSGC 2 cut(s) 113, 116
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 5 cut(s) 498, 551, 645, 783, 881
Tru9I TTAA 5 cut(s) 498, 551, 645, 783, 881
TscAI CASTG 2 cut(s) 394, 531
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 1 cut(s) 778
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 3 cut(s) 17, 417, 824
TspGWI ACGGA 3 cut(s) 4, 99, 323
TspRI CASTG 2 cut(s) 394, 531
Van91I CCANNNNNTGG 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 57
XapI RAATTY 1 cut(s) 696
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 836
XmiI GTMKAC 1 cut(s) 825
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 2 cut(s) 692, 761
Zsp2I ATGCAT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.