Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

19963267 .. 19966952

Gene Structure 3686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGAGATGCAACGCGTGTTGGAGGGACCTGGAGGGCAGGGCCATTTCCACCACTTGCGGTCACTTATTATGTACTGAAGATGCCAGCAAGATTCTCAGTAATGATGGGGCATGTCCCATTTGTGATCAAGTACTCTCCAAGAGTTTAATGAAACCTGTGGATATCAATCCAAATGAAGAATGGATAAATATGGCGATGGCTGGAATTTCTCCACAAATACTGATGAAGAGTGCATACCGAAGTGTAATGTTTTACATTGCCCAAAGAGACTTAGAGATGCAGTACAAGATGAATAGAGTTGTTGCACAGTGTCGTCAGAAATGTGAGGGTATGCAAGCAAAGTTTAGCGAGAAAATGGAGCAGGTCCATACAGCATATCAGAAGATGGGCAAGAGGTGTCAGATGATGGAGCAAGAGGTAGAAAACTTGACCAAGGATAAGCAAGAGCTCCAAGAGAAGTTCTCTGAGAAATCAAGACAGAAGAGGAAGCTTGATGAGATGTATGACCAGCTAAGAAGTGAGTATGAGTCAGTTAAACGTACAGCCATCCAACCAGCAAACAACTTCTACCCGCGACACCAAGAACCCGACTTTTTCTCAAACCCAGCAGTTAATATGATGGAGAACAGAGAGACCATTCGCAAAGACCGGTCGTTTTTCTCTCCTGCAACACCAGGACCTAAAGATGAGATATGGCCAGCAAGACAGAACAGTTCAAACTCAGGTCCATTCGACATCTCCACCGACTCACCTGCGATTCCATCCGATCTTGGAAACAGAAGAGCTGGCAGAGGACATCCTGTATACGGTGGTGGTGGCACTGCTAATCCCCAGTCAACTCTACGAAACCTTATTCTCTCCCCTATTAAACGTTCTCAGCTCTCTCGTTCCCGCCCTCAGCTGTTCACGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

304

Amino Acids

34.76

Weight (kDa)

8.99

Isoelectric Point (pI)

67.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	2 - 43	1.6e-06	zinc-RING finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	760
Acc36I	ACCTGC	2 cut(s)	352, 760
AccI	GTMKAC	1 cut(s)	804
AccII	CGCG	2 cut(s)	14, 574
AciI	CCGC	3 cut(s)	57, 572, 892
AclI	AACGTT	1 cut(s)	871
AcoI	YGGCCR	1 cut(s)	695
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	4 cut(s)	73, 132, 284, 541
AfiI	CCNNNNNNNGG	1 cut(s)	806
AflIII	ACRYGT	1 cut(s)	12
AgeI	ACCGGT	1 cut(s)	648
AgsI	TTSAA	1 cut(s)	717
AjnI	CCWGG	2 cut(s)	27, 673
AluBI	AGCT	6 cut(s)	448, 490, 511, 785, 880, 901
AluI	AGCT	6 cut(s)	448, 490, 511, 785, 880, 901
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	261, 626
AoxI	GGCC	2 cut(s)	39, 695
ApoI	RAATTY	1 cut(s)	204
AsiGI	ACCGGT	1 cut(s)	648
AspS9I	GGNCC	5 cut(s)	25, 39, 364, 677, 725
AsuHPI	GGTGA	1 cut(s)	741
AvaII	GGWCC	4 cut(s)	25, 364, 677, 725
BalI	TGGCCA	1 cut(s)	697
BanII	GRGCYC	1 cut(s)	450
BarI	GAAGNNNNNNTAC	2 cut(s)	218, 250
Bbv12I	GWGCWC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	897
BccI	CCATC	7 cut(s)	98, 190, 379, 400, 554, 613, 769
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	2 cut(s)	29, 675
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	261, 626
BfmI	CTRYAG	1 cut(s)	911
BfuAI	ACCTGC	2 cut(s)	352, 760
BmcAI	AGTACT	1 cut(s)	132
Bme1390I	CCNGG	2 cut(s)	29, 675
Bme18I	GGWCC	4 cut(s)	25, 364, 677, 725
BmgT120I	GGNCC	5 cut(s)	25, 39, 364, 677, 725
BmiI	GGNNCC	1 cut(s)	26
BmrFI	CCNGG	2 cut(s)	29, 675
BmrI	ACTGGG	1 cut(s)	826
BmsI	GCATC	2 cut(s)	70, 267
BmuI	ACTGGG	1 cut(s)	826
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpmI	CTGGAG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	1 cut(s)	648
Bse1I	ACTGG	1 cut(s)	832
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	29, 675
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	3 cut(s)	546, 761, 796
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	5 cut(s)	109, 456, 735, 890, 911
BseNI	ACTGG	1 cut(s)	832
BseYI	CCCAGC	1 cut(s)	604
Bsh1236I	CGCG	2 cut(s)	14, 574
Bsh1285I	CGRYCG	1 cut(s)	653
BshFI	GGCC	2 cut(s)	41, 697
BshTI	ACCGGT	1 cut(s)	648
BsiEI	CGRYCG	1 cut(s)	653
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	649
BslFI	GGGAC	2 cut(s)	38, 99
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	2 cut(s)	261, 626
BsmFI	GGGAC	2 cut(s)	38, 99
BsnI	GGCC	2 cut(s)	41, 697
Bso31I	GGTCTC	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	2 cut(s)	124, 766
BspACI	CCGC	3 cut(s)	57, 572, 892
BspANI	GGCC	2 cut(s)	41, 697
BspCNI	CTCAG	5 cut(s)	108, 457, 734, 889, 910
BspFNI	CGCG	2 cut(s)	14, 574
BspLI	GGNNCC	1 cut(s)	26
BspMI	ACCTGC	2 cut(s)	352, 760
BspQI	GCTCTTC	1 cut(s)	775
BspTNI	GGTCTC	1 cut(s)	626
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	832
BssAI	RCCGGY	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	2 cut(s)	124, 766
BssNAI	GTATAC	1 cut(s)	805
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	805
Bst2UI	CCWGG	2 cut(s)	29, 675
Bst4CI	ACNGT	3 cut(s)	309, 713, 809
Bst6I	CTCTTC	3 cut(s)	221, 476, 775
BstC8I	GCNNGC	4 cut(s)	85, 336, 699, 787
BstDEI	CTNAG	7 cut(s)	95, 271, 465, 512, 721, 876, 897
BstF5I	GGATG	3 cut(s)	546, 761, 796
BstFNI	CGCG	2 cut(s)	14, 574
BstKTI	GATC	2 cut(s)	127, 769
BstMAI	GTCTC	2 cut(s)	261, 626
BstMBI	GATC	2 cut(s)	124, 766
BstMCI	CGRYCG	1 cut(s)	653
BstMWI	GCNNNNNNNGC	1 cut(s)	907
BstNI	CCWGG	2 cut(s)	29, 675
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	27, 673
BstSFI	CTRYAG	1 cut(s)	911
BstUI	CGCG	2 cut(s)	14, 574
BstZ17I	GTATAC	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	41, 697
BtgZI	GCGATG	1 cut(s)	209
BtsCI	GGATG	3 cut(s)	546, 761, 796
BtsI	GCAGTG	1 cut(s)	819
BtsIMutI	CAGTG	2 cut(s)	314, 819
BveI	ACCTGC	2 cut(s)	352, 760
Cac8I	GCNNGC	4 cut(s)	85, 336, 699, 787
Cfr10I	RCCGGY	1 cut(s)	648
Cfr13I	GGNCC	5 cut(s)	25, 39, 364, 677, 725
Csp6I	GTAC	4 cut(s)	72, 131, 283, 540
CspAI	ACCGGT	1 cut(s)	648
CviAII	CATG	1 cut(s)	111
CviQI	GTAC	4 cut(s)	72, 131, 283, 540
DdeI	CTNAG	7 cut(s)	95, 271, 465, 512, 721, 876, 897
DpnI	GATC	2 cut(s)	126, 768
DpnII	GATC	2 cut(s)	124, 766
EaeI	YGGCCR	1 cut(s)	695
Eam1104I	CTCTTC	3 cut(s)	221, 476, 775
EarI	CTCTTC	3 cut(s)	221, 476, 775
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	4 cut(s)	25, 364, 677, 725
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	448
EcoO109I	RGGNCCY	2 cut(s)	25, 677
EcoRII	CCWGG	2 cut(s)	27, 673
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	1 cut(s)	114
FaqI	GGGAC	2 cut(s)	38, 99
FatI	CATG	1 cut(s)	110
FauI	CCCGC	2 cut(s)	579, 899
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	804
FokI	GGATG	3 cut(s)	533, 748, 783
FriOI	GRGCYC	1 cut(s)	450
GsaI	CCCAGC	1 cut(s)	608
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	41, 697
HapII	CCGG	1 cut(s)	649
Hin1II	CATG	1 cut(s)	114
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	4 cut(s)	91, 527, 746, 757
HpaII	CCGG	1 cut(s)	649
HphI	GGTGA	1 cut(s)	741
Hpy166II	GTNNAC	3 cut(s)	805, 837, 906
Hpy188I	TCNGA	5 cut(s)	318, 381, 402, 466, 766
Hpy188III	TCNNGA	1 cut(s)	474
Hpy8I	GTNNAC	3 cut(s)	805, 837, 906
HpyCH4III	ACNGT	3 cut(s)	309, 713, 809
HpyCH4IV	ACGT	2 cut(s)	538, 871
HpyCH4V	TGCA	6 cut(s)	9, 233, 280, 305, 334, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	907
HpyF3I	CTNAG	7 cut(s)	95, 271, 465, 512, 721, 876, 897
HpySE526I	ACGT	2 cut(s)	538, 871
Hsp92II	CATG	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	124, 766
LguI	GCTCTTC	1 cut(s)	775
LmnI	GCTCC	3 cut(s)	358, 409, 453
LweI	GCATC	2 cut(s)	70, 267
MaeII	ACGT	2 cut(s)	538, 871
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	126, 768
MboI	GATC	2 cut(s)	124, 766
MboII	GAAGA	6 cut(s)	89, 188, 238, 394, 493, 792
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	697
MluCI	AATT	1 cut(s)	204
MluI	ACGCGT	1 cut(s)	12
MluNI	TGGCCA	1 cut(s)	697
MlyI	GAGTC	2 cut(s)	536, 740
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	8 cut(s)	15, 25, 319, 387, 409, 477, 785, 906
Mox20I	TGGCCA	1 cut(s)	697
MscI	TGGCCA	1 cut(s)	697
MseI	TTAA	4 cut(s)	146, 534, 612, 867
Msp20I	TGGCCA	1 cut(s)	697
MspA1I	CMGCKG	1 cut(s)	901
MspI	CCGG	1 cut(s)	649
MspR9I	CCNGG	2 cut(s)	29, 675
MvaI	CCWGG	2 cut(s)	29, 675
MvnI	CGCG	2 cut(s)	14, 574
MwoI	GCNNNNNNNGC	1 cut(s)	907
NdeII	GATC	2 cut(s)	124, 766
NlaIII	CATG	1 cut(s)	114
NlaIV	GGNNCC	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	91, 757
PinAI	ACCGGT	1 cut(s)	648
PleI	GAGTC	2 cut(s)	535, 740
PpsI	GAGTC	2 cut(s)	535, 740
PpuMI	RGGWCCY	2 cut(s)	25, 677
Psp124BI	GAGCTC	1 cut(s)	450
Psp1406I	AACGTT	1 cut(s)	871
Psp5II	RGGWCCY	2 cut(s)	25, 677
Psp6I	CCWGG	2 cut(s)	27, 673
PspFI	CCCAGC	1 cut(s)	604
PspGI	CCWGG	2 cut(s)	27, 673
PspN4I	GGNNCC	1 cut(s)	26
PspPI	GGNCC	5 cut(s)	25, 39, 364, 677, 725
PspPPI	RGGWCCY	2 cut(s)	25, 677
PvuII	CAGCTG	1 cut(s)	901
RsaI	GTAC	4 cut(s)	73, 132, 284, 541
RsaNI	GTAC	4 cut(s)	72, 131, 283, 540
SacI	GAGCTC	1 cut(s)	450
SapI	GCTCTTC	1 cut(s)	775
SaqAI	TTAA	4 cut(s)	146, 534, 612, 867
Sau3AI	GATC	2 cut(s)	124, 766
Sau96I	GGNCC	5 cut(s)	25, 39, 364, 677, 725
ScaI	AGTACT	1 cut(s)	132
SchI	GAGTC	2 cut(s)	536, 740
ScrFI	CCNGG	2 cut(s)	29, 675
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	70, 267
SfcI	CTRYAG	1 cut(s)	911
SinI	GGWCC	4 cut(s)	25, 364, 677, 725
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	3 cut(s)	57, 572, 892
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	27, 673
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	3 cut(s)	309, 713, 809
TaiI	ACGT	2 cut(s)	541, 874
TaqI	TCGA	1 cut(s)	732
TasI	AATT	1 cut(s)	204
TatI	WGTACW	3 cut(s)	71, 130, 282
TfiI	GAWTC	2 cut(s)	91, 757
Tru1I	TTAA	4 cut(s)	146, 534, 612, 867
Tru9I	TTAA	4 cut(s)	146, 534, 612, 867
TscAI	CASTG	2 cut(s)	314, 826
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	4 cut(s)	164, 189, 239, 305
TspRI	CASTG	2 cut(s)	314, 826
VpaK11BI	GGWCC	4 cut(s)	25, 364, 677, 725
XapI	RAATTY	1 cut(s)	204
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	804
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.