Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

26846356 .. 26848548

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g23840.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAACTCATTGCTCTTATCATTTGTAGCAAGTCTGCAATTTTTTATTACTGCACTGGAAAAAGTTTATGTTTCCTTTGTTCGTTTTGAGATGCAATGCGTGTTGGCGAGAACTGGAAGGGCGAGCCGTTTCCACCACCTGTGGCCACCTTTTGTGTTTTTATTGCATTGTATTCAATGTTTTATAAAGGGACAATGGCAGGACATCTTTCCCTTGACAGTATTCCTAGTAATGAAGAGTGCACACAAAAGTGTCATGTTCTACATTGGCCAAAGGGAATTGGAAATGCAGTGCAAGATGAACAGAATGCAAGCTCAGTATCGGCAGAAATTTGAAGCAATGCAAGAAAAGTTTGGTGAGAAAATGGAACAGCTGCATGCTGCATACCAGAAAATGGCGAAGAGGTGCCAAACGATGGCACAAGAAATTGAGAGCTTGTCCAAGGATAAGCAGGAGCTGCAGGAGAAGTTTTCAGAGAAATCCAGACAGAAGAGAAAATTAGATGAAATGTATGATCGATTTAGGAGTGAGTACGATTCAGTTAAACGATCTGCCATCCAACCGTCGACCAATTTCTTTTCAAGAAATGAACCTGATATTTTCTCAAACCAAGCTAACATTATGATGGATAACAGAGAAGCTGTTAGAAGAGATTGGTCCGTTCTTACTCCTGAAACTCCAGGGCCGAAGGAGGATATATGGCCAGCGAGACAGAATAGTTCAAACTCCGGCGGTCCTTTTGACATGTCGCTTGGCTCACCAGCAAAACAAGCTGCTATTCCAGTTGATGCTGGGAATAGAAGGGCTGGTGCTCACCCTATGTTTGGAAGCGGAGCTAGCAACCCCGCAATGACTTTACGGAACATGATACTCTCCCCAATAAAGAGGCCTCAGCTCTCCCGCCGTCCCCAGATGTTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

308

Amino Acids

35.65

Weight (kDa)

9.7

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	185
AccB1I	GGYRCC	1 cut(s)	405
AccB7I	CCANNNNNTGG	2 cut(s)	394, 415
AccI	GTMKAC	1 cut(s)	566
AciI	CCGC	4 cut(s)	732, 831, 846, 901
AcoI	YGGCCR	3 cut(s)	143, 268, 701
AcsI	RAATTY	1 cut(s)	329
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	3 cut(s)	394, 415, 824
AflIII	ACRYGT	1 cut(s)	744
AgsI	TTSAA	4 cut(s)	176, 335, 582, 723
AjnI	CCWGG	1 cut(s)	679
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	9 cut(s)	314, 373, 435, 457, 614, 641, 773, 836, 895
AluI	AGCT	9 cut(s)	314, 373, 435, 457, 614, 641, 773, 836, 895
Alw21I	GWGCWC	2 cut(s)	244, 814
Alw26I	GTCTC	1 cut(s)	703
Alw44I	GTGCAC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	5 cut(s)	143, 268, 683, 701, 887
ApaLI	GTGCAC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	373, 380, 457, 773
ApoI	RAATTY	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	657, 683, 734
AsuHPI	GGTGA	3 cut(s)	368, 750, 806
AsuNHI	GCTAGC	1 cut(s)	836
AvaII	GGWCC	2 cut(s)	657, 734
BaeGI	GKGCMC	1 cut(s)	244
BalI	TGGCCA	3 cut(s)	145, 270, 703
BanI	GGYRCC	1 cut(s)	405
Bbv12I	GWGCWC	2 cut(s)	244, 814
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	4 cut(s)	360, 367, 444, 760
BccI	CCATC	3 cut(s)	409, 563, 619
BceAI	ACGGC	2 cut(s)	111, 888
BciT130I	CCWGG	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	703
BfaI	CTAG	2 cut(s)	227, 837
BfmI	CTRYAG	1 cut(s)	458
BisI	GCNGC	4 cut(s)	374, 381, 458, 774
BlsI	GCNGC	4 cut(s)	375, 382, 459, 775
Bme1390I	CCNGG	1 cut(s)	681
Bme18I	GGWCC	2 cut(s)	657, 734
BmgT120I	GGNCC	3 cut(s)	657, 683, 734
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	681
BmsI	GCATC	2 cut(s)	81, 778
BmtI	GCTAGC	1 cut(s)	840
BpmI	CTGGAG	1 cut(s)	663
Bpu10I	CCTNAGC	1 cut(s)	891
Bsa29I	ATCGAT	1 cut(s)	517
BsaAI	YACGTR	1 cut(s)	921
BsaJI	CCNNGG	2 cut(s)	441, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 415, 824
Bse1I	ACTGG	3 cut(s)	60, 118, 782
Bse3DI	GCAATG	4 cut(s)	8, 101, 345, 855
BseBI	CCWGG	1 cut(s)	681
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	441, 680
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	3 cut(s)	394, 415, 824
BseMI	GCAATG	4 cut(s)	8, 101, 345, 855
BseMII	CTCAG	2 cut(s)	329, 905
BseNI	ACTGG	3 cut(s)	60, 118, 782
BseSI	GKGCMC	1 cut(s)	244
BseXI	GCAGC	4 cut(s)	360, 367, 444, 760
BseYI	CCCAGC	1 cut(s)	791
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	5 cut(s)	145, 270, 685, 703, 889
BshNI	GGYRCC	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	517
BsiHKAI	GWGCWC	2 cut(s)	244, 814
BsiSI	CCGG	1 cut(s)	729
BslFI	GGGAC	2 cut(s)	204, 891
BslI	CCNNNNNNNGG	3 cut(s)	394, 415, 824
BsmAI	GTCTC	1 cut(s)	703
BsmFI	GGGAC	2 cut(s)	204, 891
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	5 cut(s)	145, 270, 685, 703, 889
Bsp1286I	GDGCHC	2 cut(s)	244, 814
Bsp143I	GATC	2 cut(s)	514, 548
BspACI	CCGC	4 cut(s)	732, 831, 846, 901
BspANI	GGCC	5 cut(s)	145, 270, 685, 703, 889
BspCNI	CTCAG	2 cut(s)	328, 904
BspDI	ATCGAT	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	407
BspMAI	CTGCAG	1 cut(s)	462
BspOI	GCTAGC	1 cut(s)	840
BspT107I	GGYRCC	1 cut(s)	405
BsrDI	GCAATG	4 cut(s)	8, 101, 345, 855
BsrI	ACTGG	3 cut(s)	60, 118, 782
BssECI	CCNNGG	2 cut(s)	441, 680
BssMI	GATC	2 cut(s)	514, 548
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	2 cut(s)	220, 564
Bst6I	CTCTTC	4 cut(s)	230, 395, 485, 643
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	921
BstC8I	GCNNGC	5 cut(s)	124, 312, 378, 705, 838
BstDEI	CTNAG	2 cut(s)	315, 891
BstF5I	GGATG	1 cut(s)	555
BstKTI	GATC	2 cut(s)	517, 551
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	2 cut(s)	514, 548
BstMWI	GCNNNNNNNGC	3 cut(s)	457, 770, 837
BstNI	CCWGG	1 cut(s)	681
BstNSI	RCATGY	2 cut(s)	380, 748
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	1 cut(s)	458
BstSLI	GKGCMC	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	360, 367, 444, 760
Bsu15I	ATCGAT	1 cut(s)	517
BsuRI	GGCC	5 cut(s)	145, 270, 685, 703, 889
BsuTUI	ATCGAT	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	555
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	2 cut(s)	53, 296
Cac8I	GCNNGC	5 cut(s)	124, 312, 378, 705, 838
CaiI	CAGNNNCTG	1 cut(s)	457
Cfr13I	GGNCC	3 cut(s)	657, 683, 734
ClaI	ATCGAT	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	4 cut(s)	256, 377, 745, 865
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	2 cut(s)	315, 891
DpnI	GATC	2 cut(s)	516, 550
DpnII	GATC	2 cut(s)	514, 548
EaeI	YGGCCR	3 cut(s)	143, 268, 701
Eam1104I	CTCTTC	4 cut(s)	230, 395, 485, 643
EarI	CTCTTC	4 cut(s)	230, 395, 485, 643
Eco130I	CCWWGG	1 cut(s)	441
Eco147I	AGGCCT	1 cut(s)	889
Eco47I	GGWCC	2 cut(s)	657, 734
EcoRII	CCWGG	1 cut(s)	679
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	4 cut(s)	259, 380, 748, 868
FaqI	GGGAC	2 cut(s)	204, 891
FatI	CATG	4 cut(s)	255, 376, 744, 864
FauI	CCCGC	2 cut(s)	853, 908
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	4 cut(s)	374, 381, 458, 774
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	374, 381, 458, 774
FspBI	CTAG	2 cut(s)	227, 837
GluI	GCNGC	4 cut(s)	374, 381, 458, 774
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	1 cut(s)	663
HaeIII	GGCC	5 cut(s)	145, 270, 685, 703, 889
HapII	CCGG	1 cut(s)	729
Hin1II	CATG	4 cut(s)	259, 380, 748, 868
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	1 cut(s)	536
HpaII	CCGG	1 cut(s)	729
HphI	GGTGA	3 cut(s)	368, 750, 806
Hpy166II	GTNNAC	3 cut(s)	242, 567, 918
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	3 cut(s)	483, 582, 671
Hpy8I	GTNNAC	3 cut(s)	242, 567, 918
Hpy99I	CGWCG	1 cut(s)	568
HpyAV	CCTTC	3 cut(s)	111, 682, 795
HpyCH4III	ACNGT	2 cut(s)	220, 564
HpyCH4IV	ACGT	1 cut(s)	920
HpyF10VI	GCNNNNNNNGC	3 cut(s)	457, 770, 837
HpyF3I	CTNAG	2 cut(s)	315, 891
HpySE526I	ACGT	1 cut(s)	920
Hsp92II	CATG	4 cut(s)	259, 380, 748, 868
Kzo9I	GATC	2 cut(s)	514, 548
LmnI	GCTCC	2 cut(s)	454, 833
Lsp1109I	GCAGC	4 cut(s)	360, 367, 444, 760
LweI	GCATC	2 cut(s)	81, 778
MaeI	CTAG	2 cut(s)	227, 837
MaeII	ACGT	1 cut(s)	920
MalI	GATC	2 cut(s)	516, 550
MboI	GATC	2 cut(s)	514, 548
MboII	GAAGA	4 cut(s)	247, 412, 502, 660
MhlI	GDGCHC	2 cut(s)	244, 814
MlsI	TGGCCA	3 cut(s)	145, 270, 703
MluCI	AATT	6 cut(s)	38, 278, 329, 426, 497, 571
MluNI	TGGCCA	3 cut(s)	145, 270, 703
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	4 cut(s)	396, 685, 879, 900
Mox20I	TGGCCA	3 cut(s)	145, 270, 703
MscI	TGGCCA	3 cut(s)	145, 270, 703
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	2 cut(s)	249, 623
Msp20I	TGGCCA	3 cut(s)	145, 270, 703
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	1 cut(s)	729
MspR9I	CCNGG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	681
MwoI	GCNNNNNNNGC	3 cut(s)	457, 770, 837
NdeII	GATC	2 cut(s)	514, 548
NheI	GCTAGC	1 cut(s)	836
NlaIII	CATG	4 cut(s)	259, 380, 748, 868
NlaIV	GGNNCC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	380, 748
OliI	CACNNNNGTG	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	889
PciI	ACATGT	1 cut(s)	744
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	536
PflMI	CCANNNNNTGG	2 cut(s)	394, 415
PkrI	GCNGC	4 cut(s)	375, 382, 459, 775
Ppu21I	YACGTR	1 cut(s)	921
PscI	ACATGT	1 cut(s)	744
PsiI	TTATAA	1 cut(s)	185
Psp6I	CCWGG	1 cut(s)	679
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	3 cut(s)	657, 683, 734
PstI	CTGCAG	1 cut(s)	462
PstNI	CAGNNNCTG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
RseI	CAYNNNNRTG	2 cut(s)	249, 623
SalI	GTCGAC	1 cut(s)	565
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	4 cut(s)	374, 381, 458, 774
Sau3AI	GATC	2 cut(s)	514, 548
Sau96I	GGNCC	3 cut(s)	657, 683, 734
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	2 cut(s)	244, 814
SfaNI	GCATC	2 cut(s)	81, 778
SfcI	CTRYAG	1 cut(s)	458
SinI	GGWCC	2 cut(s)	657, 734
SmiMI	CAYNNNNRTG	2 cut(s)	249, 623
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	6 cut(s)	38, 278, 329, 426, 497, 571
SseBI	AGGCCT	1 cut(s)	889
SsiI	CCGC	4 cut(s)	732, 831, 846, 901
SspMI	CTAG	2 cut(s)	227, 837
StuI	AGGCCT	1 cut(s)	889
StyD4I	CCNGG	1 cut(s)	679
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	220, 564
TaiI	ACGT	1 cut(s)	923
TaqI	TCGA	2 cut(s)	517, 566
TasI	AATT	6 cut(s)	38, 278, 329, 426, 497, 571
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	2 cut(s)	60, 296
TseI	GCWGC	4 cut(s)	373, 380, 457, 773
TspDTI	ATGAA	5 cut(s)	17, 248, 314, 519, 603
TspGWI	ACGGA	2 cut(s)	649, 874
TspRI	CASTG	2 cut(s)	60, 296
Van91I	CCANNNNNTGG	2 cut(s)	394, 415
VneI	GTGCAC	1 cut(s)	240
VpaK11BI	GGWCC	2 cut(s)	657, 734
XapI	RAATTY	1 cut(s)	329
XceI	RCATGY	2 cut(s)	380, 748
XmiI	GTMKAC	1 cut(s)	566
XspI	CTAG	2 cut(s)	227, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.