Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

10191165 .. 10191503

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCCTAGGGGATTTGGATTCGTCACTTTTGATTCAGAGGAGGCTGTGGAGGATGTGTTGCGCAAGAGGTCTCATGAATTGAATTATAAGTCTGTCGAGGCAAAGAGGGCTCACCCTAAGAATAGGAAAAACATGCTGATGAAACCTTATGATTGCTATAATCTTCGGACTCTCGGGCATTATAATCCGTGTTGCTTTAGTTATGGAGCTTCTTATGGGTATGGATACCTTTTAGGGTATACGTCTGATAATAATATTCAAAATTTTGGGCAGTATAATCCTTATTGCATTAGTTATGGAGCTCATTATGGATATGGATACACTGGAGGGTTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

112

Amino Acids

12.91

Weight (kDa)

8.62

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	87, 183
Acc16I	TGCGCA	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	262
AgsI	TTSAA	2 cut(s)	82, 260
AluBI	AGCT	2 cut(s)	209, 302
AluI	AGCT	2 cut(s)	209, 302
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	262
AspA2I	CCTAGG	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	173
AvrII	CCTAGG	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	112, 304
Bbv12I	GWGCWC	1 cut(s)	304
BciVI	GTATCC	2 cut(s)	218, 311
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	2 cut(s)	218, 311
BlnI	CCTAGG	1 cut(s)	5
BmeT110I	CYCGRG	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	5
BsaXI	ACNNNNNCTCC	3 cut(s)	41, 71, 318
Bse1I	ACTGG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	328
BseRI	GAGGAG	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	75
Bso31I	GGTCTC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	2 cut(s)	112, 304
BspHI	TCATGA	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	5
BssNAI	GTATAC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	136
BstZ17I	GTATAC	1 cut(s)	240
BsuI	GTATCC	2 cut(s)	218, 311
BtsCI	GGATG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	321
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	63
CviAII	CATG	2 cut(s)	74, 133
CviJI	RGCY	4 cut(s)	44, 110, 209, 302
CviKI_1	RGCY	4 cut(s)	44, 110, 209, 302
DdeI	CTNAG	1 cut(s)	117
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	2 cut(s)	112, 304
Eco31I	GGTCTC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	2 cut(s)	112, 304
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	2 cut(s)	77, 136
FatI	CATG	2 cut(s)	73, 132
FblI	GTMKAC	1 cut(s)	239
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	2 cut(s)	112, 304
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	2 cut(s)	77, 136
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	18, 32, 169
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	3 cut(s)	37, 168, 247
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	2 cut(s)	77, 136
HspAI	GCGC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	206, 299
LpnPI	CCDG	1 cut(s)	309
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	22
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	2 cut(s)	112, 304
MluCI	AATT	3 cut(s)	77, 82, 262
MlyI	GAGTC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	31, 34, 43, 60, 91, 99, 320
MslI	CAYNNNNRTG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	77, 136
NmuCI	GTSAC	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	62
NspI	RCATGY	1 cut(s)	136
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	18, 32
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PsiI	TTATAA	2 cut(s)	87, 183
Psp124BI	GAGCTC	1 cut(s)	304
RseI	CAYNNNNRTG	1 cut(s)	137
SacI	GAGCTC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	2 cut(s)	112, 304
SetI	ASST	6 cut(s)	71, 148, 211, 231, 245, 304
SgeI	CNNG	8 cut(s)	18, 76, 86, 109, 145, 185, 187, 201
SmiMI	CAYNNNNRTG	1 cut(s)	137
Sse9I	AATT	3 cut(s)	77, 82, 262
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	5
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	96
TasI	AATT	3 cut(s)	77, 82, 262
TfiI	GAWTC	2 cut(s)	18, 32
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	2 cut(s)	90, 155
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	328
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	136
XmaJI	CCTAGG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.