Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

10193060 .. 10194413

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCATCATAGTGTTAATATGGTTCCTGGAGTGTCAAGTGTGCCTCACTACAATACATCACCTACTGTCTCCACTACACACTTTGGAAATGCTTTACCACAGAAATCTATGTCGTCAAGCTCTGGATTTGCTATTCCCAATGTTCCTGCAAATTGTCAGTCTTCAAAGAACTGTGGTGTACTTAGTCCTATATCTGGTGCTCCTTCCGCTCCTAATCCTAGATATGTGTTGAATAATGGTATTGGTAATGATATCCTTGCTGGAACTTTTTCCCAAACACCCCAAGTGGCCAAGAAACAAATCGCTCTCTGTGATGTCACGAACCAAAGCGATGGGTCTCAAATTGGTTCACGGAGTTCTGCTTCCTTGTCAAAGCCTATGGTGCCATGTACAACAAAAGTTGTGAAGACGATAAAGGAAACATCTACTCTCAATAGTAATCATGGCCTCTCAGGGAATGTGTTTCCGGCATCACTGAGTTCAAAGTCAAGCATCTTGGTTCCTTTTAGTGATACGTCAGTTTCAGGAACTGTTGAGTCTATTGAAACAGTTGTCACTAACCATTCTCCCAGCAGCAGAGTCCAGAATTTGAATATGTTGGCAATCGATGAACTTCTCAAGTATATCACTAATAGTTCACCTGGAATCAAACGTCTCCGTTTGACAAACAAGGGATTAATTGAAGCTGCTTCCAAACCTCAGCTGCTAGAGGACCTTGAAATTTCAAGATCACCAAGGTCATACTCGCGTCAAACTCTAGAAGTGATTGGGCGCTCTTGCCCTCTTTTAACAACATTCAAGTATAATGGCAGCTGGCAGAGATTTTACAAACATAGGGGTACTAATGAAGATGCACTTGCCATAGCGGAAACAATGCATGGTTTACGCCAATTACAGCTTTTTGGGAATGCAGTGACTAATGATGGCTTGGCGAAGATTCTTGATTGTTGCCCTCATCTTGAGTCACTTGATCTGCGGGATTGTTTCAATCTTAATCTGGGAGGAGATTTGGAAATAAGATGTTCTAAACAAATTAAAAGACTGCAGCTTCCAGAGGATTGTCCTGATGATGATTCTGAATCAACCGAGTCTTTTGGAGCATATGAATTTCGATGCTTTACTATGTACATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

377

Amino Acids

40.79

Weight (kDa)

7.97

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	209
AccII	CGCG	1 cut(s)	748
AciI	CCGC	3 cut(s)	207, 866, 976
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	3 cut(s)	586, 720, 1106
AfaI	GTAC	4 cut(s)	180, 391, 841, 1127
AfiI	CCNNNNNNNGG	1 cut(s)	194
AjnI	CCWGG	2 cut(s)	25, 640
AluBI	AGCT	6 cut(s)	120, 686, 703, 813, 898, 1048
AluI	AGCT	6 cut(s)	120, 686, 703, 813, 898, 1048
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	3 cut(s)	73, 342, 659
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	288, 445
ApeKI	GCWGC	5 cut(s)	573, 686, 703, 810, 1045
ApoI	RAATTY	3 cut(s)	586, 720, 1106
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AseI	ATTAAT	1 cut(s)	677
Asp700I	GAANNNNTTC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	1 cut(s)	712
AsuHPI	GGTGA	3 cut(s)	51, 630, 723
AvaII	GGWCC	1 cut(s)	712
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BalI	TGGCCA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	382
BbsI	GAAGAC	2 cut(s)	153, 413
Bbv12I	GWGCWC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	5 cut(s)	585, 673, 690, 822, 1057
BccI	CCATC	2 cut(s)	326, 917
BciT130I	CCWGG	2 cut(s)	27, 642
BcoDI	GTCTC	3 cut(s)	73, 342, 659
BfaI	CTAG	3 cut(s)	219, 707, 758
BfmI	CTRYAG	1 cut(s)	1043
BfoI	RGCGCY	1 cut(s)	775
BisI	GCNGC	5 cut(s)	574, 687, 704, 811, 1046
BlsI	GCNGC	5 cut(s)	575, 688, 705, 812, 1047
Bme1390I	CCNGG	2 cut(s)	27, 642
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	3 cut(s)	24, 384, 501
BmrFI	CCNGG	2 cut(s)	27, 642
BmsI	GCATC	5 cut(s)	13, 479, 501, 841, 1103
BpiI	GAAGAC	2 cut(s)	153, 413
BpmI	CTGGAG	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	699
BpuEI	CTTGAG	2 cut(s)	602, 980
Bsa29I	ATCGAT	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	734
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
BseBI	CCWGG	2 cut(s)	27, 642
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	1 cut(s)	734
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	3 cut(s)	465, 467, 713
BseRI	GAGGAG	1 cut(s)	1017
BseXI	GCAGC	5 cut(s)	585, 673, 690, 822, 1057
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	748
BshFI	GGCC	2 cut(s)	290, 447
BshNI	GGYRCC	1 cut(s)	382
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	3 cut(s)	73, 342, 659
BsmBI	CGTCTC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	2 cut(s)	290, 447
Bso31I	GGTCTC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp1407I	TGTACA	2 cut(s)	389, 1125
Bsp143I	GATC	2 cut(s)	728, 970
BspACI	CCGC	3 cut(s)	207, 866, 976
BspANI	GGCC	2 cut(s)	290, 447
BspCNI	CTCAG	3 cut(s)	464, 468, 712
BspDI	ATCGAT	1 cut(s)	606
BspFNI	CGCG	1 cut(s)	748
BspLI	GGNNCC	3 cut(s)	24, 384, 501
BspMAI	CTGCAG	1 cut(s)	1047
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	1 cut(s)	342
BsrBI	CCGCTC	1 cut(s)	209
BsrGI	TGTACA	2 cut(s)	389, 1125
BssECI	CCNNGG	1 cut(s)	734
BssMI	GATC	2 cut(s)	728, 970
BssT1I	CCWWGG	1 cut(s)	734
Bst2UI	CCWGG	2 cut(s)	27, 642
Bst4CI	ACNGT	4 cut(s)	67, 173, 532, 550
BstAUI	TGTACA	2 cut(s)	389, 1125
BstC8I	GCNNGC	1 cut(s)	815
BstDEI	CTNAG	4 cut(s)	182, 451, 476, 699
BstFNI	CGCG	1 cut(s)	748
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	774
BstKTI	GATC	2 cut(s)	731, 973
BstMAI	GTCTC	3 cut(s)	73, 342, 659
BstMBI	GATC	2 cut(s)	728, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 382
BstNI	CCWGG	2 cut(s)	27, 642
BstSCI	CCNGG	2 cut(s)	25, 640
BstSFI	CTRYAG	1 cut(s)	1043
BstUI	CGCG	1 cut(s)	748
BstV1I	GCAGC	5 cut(s)	585, 673, 690, 822, 1057
BstV2I	GAAGAC	2 cut(s)	153, 413
BstXI	CCANNNNNNTGG	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	2 cut(s)	290, 447
BsuTUI	ATCGAT	1 cut(s)	606
BtgZI	GCGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	2 cut(s)	473, 918
Cac8I	GCNNGC	1 cut(s)	815
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	1 cut(s)	712
ClaI	ATCGAT	1 cut(s)	606
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	4 cut(s)	179, 390, 840, 1126
CviAII	CATG	3 cut(s)	387, 443, 878
CviQI	GTAC	4 cut(s)	179, 390, 840, 1126
DdeI	CTNAG	4 cut(s)	182, 451, 476, 699
DpnI	GATC	2 cut(s)	730, 972
DpnII	GATC	2 cut(s)	728, 970
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	342
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	712
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	2 cut(s)	25, 640
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	734
EcoT22I	ATGCAT	2 cut(s)	6, 879
ErhI	CCWWGG	1 cut(s)	734
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	3 cut(s)	390, 446, 881
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FatI	CATG	3 cut(s)	386, 442, 877
FauI	CCCGC	1 cut(s)	969
FauNDI	CATATG	1 cut(s)	1102
Fnu4HI	GCNGC	5 cut(s)	574, 687, 704, 811, 1046
Fsp4HI	GCNGC	5 cut(s)	574, 687, 704, 811, 1046
FspBI	CTAG	3 cut(s)	219, 707, 758
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	5 cut(s)	574, 687, 704, 811, 1046
GsaI	CCCAGC	1 cut(s)	573
GsuI	CTGGAG	1 cut(s)	48
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	2 cut(s)	290, 447
HapII	CCGG	1 cut(s)	467
HgaI	GACGC	1 cut(s)	737
HhaI	GCGC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	390, 446, 881
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HinfI	GANTC	8 cut(s)	536, 579, 645, 937, 962, 1073, 1079, 1088
HpaII	CCGG	1 cut(s)	467
HphI	GGTGA	3 cut(s)	51, 630, 723
Hpy166II	GTNNAC	4 cut(s)	179, 350, 638, 884
Hpy188I	TCNGA	1 cut(s)	1078
Hpy8I	GTNNAC	4 cut(s)	179, 350, 638, 884
HpyAV	CCTTC	1 cut(s)	213
HpyCH4III	ACNGT	4 cut(s)	67, 173, 532, 550
HpyCH4IV	ACGT	2 cut(s)	515, 652
HpyCH4V	TGCA	6 cut(s)	4, 149, 854, 877, 911, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 382
HpyF3I	CTNAG	4 cut(s)	182, 451, 476, 699
HpySE526I	ACGT	2 cut(s)	515, 652
Hsp92II	CATG	3 cut(s)	390, 446, 881
HspAI	GCGC	1 cut(s)	772
Kzo9I	GATC	2 cut(s)	728, 970
LmnI	GCTCC	3 cut(s)	205, 214, 1097
Lsp1109I	GCAGC	5 cut(s)	585, 673, 690, 822, 1057
LweI	GCATC	5 cut(s)	13, 479, 501, 841, 1103
MaeI	CTAG	3 cut(s)	219, 707, 758
MaeII	ACGT	2 cut(s)	515, 652
MaeIII	GTNAC	4 cut(s)	316, 553, 913, 963
MalI	GATC	2 cut(s)	730, 972
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	2 cut(s)	728, 970
MboII	GAAGA	4 cut(s)	153, 418, 860, 946
MhlI	GDGCHC	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	8 cut(s)	151, 342, 586, 678, 720, 890, 1032, 1106
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	4 cut(s)	545, 588, 971, 1097
MnlI	CCTC	8 cut(s)	54, 458, 703, 708, 792, 963, 995, 1048
Mox20I	TGGCCA	1 cut(s)	290
Mph1103I	ATGCAT	2 cut(s)	6, 879
MroXI	GAANNNNTTC	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	5 cut(s)	15, 677, 788, 993, 1035
MslI	CAYNNNNRTG	1 cut(s)	9
Msp20I	TGGCCA	1 cut(s)	290
MspA1I	CMGCKG	2 cut(s)	703, 813
MspI	CCGG	1 cut(s)	467
MspR9I	CCNGG	2 cut(s)	27, 642
Mva1269I	GAATGC	1 cut(s)	913
MvaI	CCWGG	2 cut(s)	27, 642
MvnI	CGCG	1 cut(s)	748
MwoI	GCNNNNNNNGC	2 cut(s)	206, 382
NdeI	CATATG	1 cut(s)	1102
NdeII	GATC	2 cut(s)	728, 970
NlaIII	CATG	3 cut(s)	390, 446, 881
NlaIV	GGNNCC	3 cut(s)	24, 384, 501
NmuCI	GTSAC	4 cut(s)	316, 553, 913, 963
NsiI	ATGCAT	2 cut(s)	6, 879
PctI	GAATGC	1 cut(s)	913
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	4 cut(s)	645, 937, 1073, 1079
PfoI	TCCNGGA	1 cut(s)	25
PkrI	GCNGC	5 cut(s)	575, 688, 705, 812, 1047
PleI	GAGTC	4 cut(s)	544, 587, 970, 1096
PpsI	GAGTC	4 cut(s)	544, 587, 970, 1096
PpuMI	RGGWCCY	1 cut(s)	712
PshBI	ATTAAT	1 cut(s)	677
Psp5II	RGGWCCY	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	25, 640
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	2 cut(s)	25, 640
PspN4I	GGNNCC	3 cut(s)	24, 384, 501
PspPI	GGNCC	1 cut(s)	712
PspPPI	RGGWCCY	1 cut(s)	712
PstI	CTGCAG	1 cut(s)	1047
PstNI	CAGNNNCTG	1 cut(s)	530
PvuII	CAGCTG	2 cut(s)	703, 813
RsaI	GTAC	4 cut(s)	180, 391, 841, 1127
RsaNI	GTAC	4 cut(s)	179, 390, 840, 1126
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	5 cut(s)	15, 677, 788, 993, 1035
SatI	GCNGC	5 cut(s)	574, 687, 704, 811, 1046
Sau3AI	GATC	2 cut(s)	728, 970
Sau96I	GGNCC	1 cut(s)	712
SchI	GAGTC	4 cut(s)	545, 588, 971, 1097
ScrFI	CCNGG	2 cut(s)	27, 642
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	5 cut(s)	13, 479, 501, 841, 1103
SfcI	CTRYAG	1 cut(s)	1043
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	617, 959
SmoI	CTYRAG	2 cut(s)	617, 959
Sse9I	AATT	8 cut(s)	151, 342, 586, 678, 720, 890, 1032, 1106
SsiI	CCGC	3 cut(s)	207, 866, 976
SspMI	CTAG	3 cut(s)	219, 707, 758
StyD4I	CCNGG	2 cut(s)	25, 640
StyI	CCWWGG	1 cut(s)	734
TaaI	ACNGT	4 cut(s)	67, 173, 532, 550
TaiI	ACGT	2 cut(s)	518, 655
TaqI	TCGA	2 cut(s)	606, 1111
TasI	AATT	8 cut(s)	151, 342, 586, 678, 720, 890, 1032, 1106
TatI	WGTACW	3 cut(s)	178, 389, 1125
TfiI	GAWTC	4 cut(s)	645, 937, 1073, 1079
Tru1I	TTAA	5 cut(s)	15, 677, 788, 993, 1035
Tru9I	TTAA	5 cut(s)	15, 677, 788, 993, 1035
TscAI	CASTG	2 cut(s)	480, 918
TseFI	GTSAC	4 cut(s)	316, 553, 913, 963
TseI	GCWGC	5 cut(s)	573, 686, 703, 810, 1045
Tsp45I	GTSAC	4 cut(s)	316, 553, 913, 963
TspDTI	ATGAA	3 cut(s)	624, 861, 1119
TspGWI	ACGGA	2 cut(s)	367, 647
TspRI	CASTG	2 cut(s)	480, 918
VpaK11BI	GGWCC	1 cut(s)	712
VspI	ATTAAT	1 cut(s)	677
XapI	RAATTY	3 cut(s)	586, 720, 1106
XbaI	TCTAGA	1 cut(s)	757
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	3 cut(s)	219, 707, 758
Zsp2I	ATGCAT	2 cut(s)	6, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.