Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Reverse (-)

11286377 .. 11290394

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17740.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAGATGCAATGCGTGTTGGCGTGAATTGGAAGGCCGGGCCATCTCGACAACCTGTTGCCACCTTCTCTGCACAGAGGATGCTAACAAGATCCTTAGCAATGATGGAGCATGTCCCATTTGCGATCAAGTGCTTTCTAAGAGTCATATGAAAGTTGTGGATGTCAATCCAAATGACGAATGGATAAACATGGCCATGACTGGAGTTTCTCCAGATATATTGATGAAGAGTGCACACAGAAGTGTCATGTTCTATATTGGGCAAAAGGAATTGGTAATGCAGCGCAAGTTGAGCATGGTAGCAGGTCAATACCGGCAGAAATGTGAAGCAATGCAAGAAAAGTTCATGGAGCAATTCCAAAAGATGCAGTCTCAGTGCCAGAAATGGGCCAAGAAGTGTGAAATGTTGGAGCAAGAAAATGAGAACTTGGCCAAGGATAAGCAGGAGCTCCAGGAGAAATATTCTGAGAAATCCAGACAGAAGAGAAAGTTAGATGAAATGTATGATCAATTGAGGAGTGAGTACGAATCAGTTAAACGAACTGCCATCCAACCTGCAACCAATTTCTATTCGAGAAATGAACCTGATCTTTTCTCAAACCAGGCTAACATTATGGATCGCAGAGAGGCTGTTAGAAAAGGGCCAAAAGAGGATATATGGCCAGCAAGACAGAATAGTTCAAACTCTGGTGGTCCTTTTGACATCTCTGTCTCACCGGCAAAACAGCCTGCTATGCCAGTTGATGCTGTGAACAGAAGGCCTGCTGCTCACCCCATGTTTGGATCTGGAGCTGGCAACCCCTCATCGACTCTGAGGAACATTTTATTCTCCCCAATAAAGAGGCCTCAGCTCTCCCGTCGTCCTCAAATGTTCACGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

294

Amino Acids

33.66

Weight (kDa)

9.03

Isoelectric Point (pI)

66.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	707
Acc36I	ACCTGC	2 cut(s)	293, 562
AclWI	GGATC	3 cut(s)	85, 624, 790
AcoI	YGGCCR	3 cut(s)	192, 429, 659
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	385, 779
AgsI	TTSAA	1 cut(s)	681
AjnI	CCWGG	2 cut(s)	450, 600
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	448, 791, 850
AluI	AGCT	3 cut(s)	448, 791, 850
Alw21I	GWGCWC	2 cut(s)	235, 450
Alw26I	GTCTC	2 cut(s)	375, 715
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	85, 624, 790
AoxI	GGCC	9 cut(s)	34, 39, 192, 387, 429, 641, 659, 758, 842
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	280, 764
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	4 cut(s)	39, 387, 641, 692
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	2 cut(s)	705, 761
AvaII	GGWCC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	235
BalI	TGGCCA	3 cut(s)	194, 431, 661
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	2 cut(s)	235, 450
BbvCI	CCTCAGC	1 cut(s)	846
BbvI	GCAGC	2 cut(s)	292, 751
BccI	CCATC	3 cut(s)	50, 98, 554
BciT130I	CCWGG	2 cut(s)	452, 602
BclI	TGATCA	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	375, 715
BfaI	CTAG	1 cut(s)	880
BfuAI	ACCTGC	2 cut(s)	293, 562
BisI	GCNGC	2 cut(s)	281, 765
BlsI	GCNGC	2 cut(s)	282, 766
Bme1390I	CCNGG	3 cut(s)	38, 452, 602
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	4 cut(s)	39, 387, 641, 692
BmrFI	CCNGG	3 cut(s)	38, 452, 602
BmsI	GCATC	3 cut(s)	70, 354, 733
BpmI	CTGGAG	4 cut(s)	195, 222, 434, 807
Bpu10I	CCTNAGC	2 cut(s)	95, 846
BpuMI	CCSGG	1 cut(s)	38
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 779
Bse118I	RCCGGY	2 cut(s)	312, 715
Bse1I	ACTGG	2 cut(s)	205, 737
Bse3DI	GCAATG	3 cut(s)	16, 106, 336
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	452, 602
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	3 cut(s)	85, 166, 546
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	385, 779
BseMI	GCAATG	3 cut(s)	16, 106, 336
BseMII	CTCAG	4 cut(s)	386, 456, 803, 860
BseNI	ACTGG	2 cut(s)	205, 737
BseRI	GAGGAG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	292, 751
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	9 cut(s)	36, 41, 194, 389, 431, 643, 661, 760, 844
BsiHKAI	GWGCWC	2 cut(s)	235, 450
BsiSI	CCGG	3 cut(s)	37, 313, 716
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	2 cut(s)	385, 779
BsmAI	GTCTC	2 cut(s)	375, 715
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	9 cut(s)	36, 41, 194, 389, 431, 643, 661, 760, 844
Bsp1286I	GDGCHC	2 cut(s)	235, 450
Bsp143I	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
BspANI	GGCC	9 cut(s)	36, 41, 194, 389, 431, 643, 661, 760, 844
BspCNI	CTCAG	4 cut(s)	385, 457, 804, 859
BspMI	ACCTGC	2 cut(s)	293, 562
BspPI	GGATC	3 cut(s)	85, 624, 790
BsrDI	GCAATG	3 cut(s)	16, 106, 336
BsrFI	RCCGGY	2 cut(s)	312, 715
BsrI	ACTGG	2 cut(s)	205, 737
BssAI	RCCGGY	2 cut(s)	312, 715
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	452, 602
Bst6I	CTCTTC	2 cut(s)	221, 476
BstC8I	GCNNGC	4 cut(s)	663, 729, 762, 793
BstDEI	CTNAG	6 cut(s)	95, 138, 372, 465, 812, 846
BstF5I	GGATG	3 cut(s)	85, 166, 546
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	6 cut(s)	93, 127, 508, 589, 619, 785
BstMAI	GTCTC	2 cut(s)	375, 715
BstMBI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 733
BstNI	CCWGG	2 cut(s)	452, 602
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	3 cut(s)	36, 450, 600
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	292, 751
BstX2I	RGATCY	2 cut(s)	90, 782
BstYI	RGATCY	2 cut(s)	90, 782
BsuRI	GGCC	9 cut(s)	36, 41, 194, 389, 431, 643, 661, 760, 844
BtsCI	GGATG	3 cut(s)	85, 166, 546
BtsIMutI	CAGTG	1 cut(s)	380
BveI	ACCTGC	2 cut(s)	293, 562
Cac8I	GCNNGC	4 cut(s)	663, 729, 762, 793
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	2 cut(s)	312, 715
Cfr13I	GGNCC	4 cut(s)	39, 387, 641, 692
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	7 cut(s)	111, 190, 196, 247, 295, 346, 775
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	6 cut(s)	95, 138, 372, 465, 812, 846
DpnI	GATC	6 cut(s)	92, 126, 507, 588, 618, 784
DpnII	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
DrdI	GACNNNNNNGTC	1 cut(s)	707
DseDI	GACNNNNNNGTC	1 cut(s)	707
EaeI	YGGCCR	3 cut(s)	192, 429, 659
Eam1104I	CTCTTC	2 cut(s)	221, 476
EarI	CTCTTC	2 cut(s)	221, 476
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	2 cut(s)	760, 844
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	692
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	450, 600
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	7 cut(s)	114, 193, 199, 250, 298, 349, 778
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	7 cut(s)	110, 189, 195, 246, 294, 345, 774
FauNDI	CATATG	1 cut(s)	147
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	281, 765
FokI	GGATG	3 cut(s)	92, 173, 533
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	2 cut(s)	281, 765
FspBI	CTAG	1 cut(s)	880
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	2 cut(s)	281, 765
GsuI	CTGGAG	4 cut(s)	195, 222, 434, 807
HaeIII	GGCC	9 cut(s)	36, 41, 194, 389, 431, 643, 661, 760, 844
HapII	CCGG	3 cut(s)	37, 313, 716
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	7 cut(s)	114, 193, 199, 250, 298, 349, 778
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	142, 527, 808
HpaII	CCGG	3 cut(s)	37, 313, 716
HphI	GGTGA	2 cut(s)	705, 761
Hpy166II	GTNNAC	3 cut(s)	233, 751, 873
Hpy188I	TCNGA	2 cut(s)	466, 813
Hpy188III	TCNNGA	5 cut(s)	46, 212, 474, 573, 786
Hpy8I	GTNNAC	3 cut(s)	233, 751, 873
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	3 cut(s)	26, 74, 750
HpyCH4IV	ACGT	1 cut(s)	875
HpyCH4V	TGCA	7 cut(s)	9, 72, 233, 280, 334, 367, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 733
HpyF3I	CTNAG	6 cut(s)	95, 138, 372, 465, 812, 846
HpySE526I	ACGT	1 cut(s)	875
Hsp92II	CATG	7 cut(s)	114, 193, 199, 250, 298, 349, 778
HspAI	GCGC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
LmnI	GCTCC	6 cut(s)	107, 349, 409, 445, 453, 788
Lsp1109I	GCAGC	2 cut(s)	292, 751
LweI	GCATC	3 cut(s)	70, 354, 733
MaeI	CTAG	1 cut(s)	880
MaeII	ACGT	1 cut(s)	875
MalI	GATC	6 cut(s)	92, 126, 507, 588, 618, 784
MboI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
MboII	GAAGA	2 cut(s)	238, 493
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	2 cut(s)	90, 782
MhlI	GDGCHC	2 cut(s)	235, 450
MlsI	TGGCCA	3 cut(s)	194, 431, 661
MluCI	AATT	5 cut(s)	26, 269, 353, 509, 562
MluNI	TGGCCA	3 cut(s)	194, 431, 661
MlyI	GAGTC	2 cut(s)	151, 802
MmeI	TCCRAC	2 cut(s)	387, 574
MnlI	CCTC	9 cut(s)	70, 507, 619, 643, 807, 811, 834, 855, 873
Mox20I	TGGCCA	3 cut(s)	194, 431, 661
MscI	TGGCCA	3 cut(s)	194, 431, 661
MseI	TTAA	1 cut(s)	534
MslI	CAYNNNNRTG	2 cut(s)	194, 240
Msp20I	TGGCCA	3 cut(s)	194, 431, 661
MspI	CCGG	3 cut(s)	37, 313, 716
MspR9I	CCNGG	3 cut(s)	38, 452, 602
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	452, 602
MwoI	GCNNNNNNNGC	2 cut(s)	291, 733
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
NlaIII	CATG	7 cut(s)	114, 193, 199, 250, 298, 349, 778
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	240
PceI	AGGCCT	2 cut(s)	760, 844
PfeI	GAWTC	1 cut(s)	527
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	282, 766
PleI	GAGTC	2 cut(s)	150, 802
PpsI	GAGTC	2 cut(s)	150, 802
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	450, 600
PspGI	CCWGG	2 cut(s)	450, 600
PspPI	GGNCC	4 cut(s)	39, 387, 641, 692
PsuI	RGATCY	2 cut(s)	90, 782
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	2 cut(s)	194, 240
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	1 cut(s)	534
SatI	GCNGC	2 cut(s)	281, 765
Sau3AI	GATC	6 cut(s)	90, 124, 505, 586, 616, 782
Sau96I	GGNCC	4 cut(s)	39, 387, 641, 692
SchI	GAGTC	2 cut(s)	151, 802
ScrFI	CCNGG	3 cut(s)	38, 452, 602
SduI	GDGCHC	2 cut(s)	235, 450
SetI	ASST	9 cut(s)	56, 66, 307, 450, 556, 586, 793, 852, 878
SfaNI	GCATC	3 cut(s)	70, 354, 733
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	2 cut(s)	194, 240
Sse9I	AATT	5 cut(s)	26, 269, 353, 509, 562
SseBI	AGGCCT	2 cut(s)	760, 844
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	1 cut(s)	880
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	2 cut(s)	760, 844
StyD4I	CCNGG	3 cut(s)	36, 450, 600
StyI	CCWWGG	1 cut(s)	432
TaiI	ACGT	1 cut(s)	878
TaqI	TCGA	3 cut(s)	47, 572, 806
TasI	AATT	5 cut(s)	26, 269, 353, 509, 562
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	1 cut(s)	534
Tru9I	TTAA	1 cut(s)	534
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	2 cut(s)	280, 764
TspDTI	ATGAA	5 cut(s)	164, 239, 334, 510, 594
TspRI	CASTG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	692
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XspI	CTAG	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.