Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004181.1

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

33970 .. 35027

Gene Structure 1058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004181.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgcagcgcaagttgagcatggtagcaggtcaataccggcagaaatgtgaagcaatgcaagaaaagttcatggagcaattgcaaaagatgcagtctcagtgccagaaatatgccaagaagtgcgaaatgttggagcaagaaaatgagagcttgtccaaggataagcaggagctccaggaaaaatattcagagaaatccagacagaagagaaagttggatgaaatgtatgatcaattgaggagtgagtacgaatcagctaaacgaaatgccatccaacctgcaacaaatttctattccagaaatgaacctgatcttttctcaaaccaggctaacattatggatcgcagagaggctgttagaaaagattggcgggtccttactcctgaaactccagggccaaaagaggatatatggccagcaagacagaatagttcaaactcgggtggtccttttgatgtctctatctcaccggcaaaacaagctgctatgccagtcgatgctgtgaacagaaggcctggtgctaacccaatgtttggatccggagctagcaacccctcaacgactttaaggaacatgttattctccccaataaagaggcctcagctctcccgtcgtcctcagatgttcacgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

211

Amino Acids

24.5

Weight (kDa)

9.58

Isoelectric Point (pI)

72.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	17, 286
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccIII	TCCGGA	1 cut(s)	539
AciI	CCGC	1 cut(s)	370
AclWI	GGATC	3 cut(s)	348, 531, 544
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	533
AflIII	ACRYGT	1 cut(s)	573
AgsI	TTSAA	1 cut(s)	435
AjnI	CCWGG	4 cut(s)	174, 324, 391, 514
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	6 cut(s)	150, 172, 257, 482, 545, 604
AluI	AGCT	6 cut(s)	150, 172, 257, 482, 545, 604
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	99, 463
AlwI	GGATC	3 cut(s)	348, 531, 544
Ama87I	CYCGRG	1 cut(s)	439
Aor13HI	TCCGGA	1 cut(s)	539
AoxI	GGCC	4 cut(s)	395, 413, 512, 596
ApeKI	GCWGC	2 cut(s)	4, 482
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	373, 395, 446
AsuHPI	GGTGA	1 cut(s)	459
AsuNHI	GCTAGC	1 cut(s)	545
AvaI	CYCGRG	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	373, 446
BalI	TGGCCA	1 cut(s)	415
BamHI	GGATCC	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	16, 469
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	4 cut(s)	176, 326, 393, 516
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	99, 463
BfaI	CTAG	2 cut(s)	546, 634
BfuAI	ACCTGC	2 cut(s)	17, 286
BisI	GCNGC	2 cut(s)	5, 483
BlsI	GCNGC	2 cut(s)	6, 484
Bme1390I	CCNGG	4 cut(s)	176, 326, 393, 516
Bme18I	GGWCC	2 cut(s)	373, 446
BmeT110I	CYCGRG	1 cut(s)	439
BmgT120I	GGNCC	3 cut(s)	373, 395, 446
BmiI	GGNNCC	2 cut(s)	374, 538
BmrFI	CCNGG	4 cut(s)	176, 326, 393, 516
BmsI	GCATC	2 cut(s)	78, 487
BmtI	GCTAGC	1 cut(s)	549
BpmI	CTGGAG	2 cut(s)	158, 375
Bpu10I	CCTNAGC	1 cut(s)	600
BsaJI	CCNNGG	2 cut(s)	156, 392
BsaWI	WCCGGW	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse118I	RCCGGY	2 cut(s)	36, 469
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	60
BseAI	TCCGGA	1 cut(s)	539
BseBI	CCWGG	4 cut(s)	176, 326, 393, 516
BseDI	CCNNGG	2 cut(s)	156, 392
BseGI	GGATG	2 cut(s)	223, 270
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	110, 614, 632
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	16, 469
BshFI	GGCC	4 cut(s)	397, 415, 514, 598
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	439
BsiSI	CCGG	3 cut(s)	37, 470, 540
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	2 cut(s)	99, 463
BsnI	GGCC	4 cut(s)	397, 415, 514, 598
BsoBI	CYCGRG	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	229, 310, 340, 536
BspACI	CCGC	1 cut(s)	370
BspANI	GGCC	4 cut(s)	397, 415, 514, 598
BspCNI	CTCAG	3 cut(s)	109, 613, 631
BspEI	TCCGGA	1 cut(s)	539
BspLI	GGNNCC	2 cut(s)	374, 538
BspMI	ACCTGC	2 cut(s)	17, 286
BspOI	GCTAGC	1 cut(s)	549
BspPI	GGATC	3 cut(s)	348, 531, 544
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	2 cut(s)	36, 469
BsrI	ACTGG	1 cut(s)	491
BssAI	RCCGGY	2 cut(s)	36, 469
BssECI	CCNNGG	2 cut(s)	156, 392
BssMI	GATC	4 cut(s)	229, 310, 340, 536
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	4 cut(s)	176, 326, 393, 516
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	417, 547
BstDEI	CTNAG	3 cut(s)	96, 600, 618
BstF5I	GGATG	2 cut(s)	223, 270
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	4 cut(s)	232, 313, 343, 539
BstMAI	GTCTC	2 cut(s)	99, 463
BstMBI	GATC	4 cut(s)	229, 310, 340, 536
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 88, 479
BstNI	CCWGG	4 cut(s)	176, 326, 393, 516
BstNSI	RCATGY	1 cut(s)	577
BstSCI	CCNGG	4 cut(s)	174, 324, 391, 514
BstV1I	GCAGC	2 cut(s)	16, 469
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BsuRI	GGCC	4 cut(s)	397, 415, 514, 598
BtsCI	GGATG	2 cut(s)	223, 270
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	2 cut(s)	17, 286
Cac8I	GCNNGC	2 cut(s)	417, 547
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	36, 469
Cfr13I	GGNCC	3 cut(s)	373, 395, 446
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	3 cut(s)	19, 70, 574
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	3 cut(s)	96, 600, 618
DpnI	GATC	4 cut(s)	231, 312, 342, 538
DpnII	GATC	4 cut(s)	229, 310, 340, 536
EaeI	YGGCCR	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	2 cut(s)	514, 598
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	373, 446
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	439
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	373
EcoRII	CCWGG	4 cut(s)	174, 324, 391, 514
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	22, 73, 577
FaiI	YATR	9 cut(s)	20, 71, 111, 228, 338, 410, 412, 488, 575
FatI	CATG	3 cut(s)	18, 69, 573
FauI	CCCGC	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	5, 483
FokI	GGATG	2 cut(s)	230, 257
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	5, 483
FspBI	CTAG	2 cut(s)	546, 634
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	5, 483
GsuI	CTGGAG	2 cut(s)	158, 375
HaeIII	GGCC	4 cut(s)	397, 415, 514, 598
HapII	CCGG	3 cut(s)	37, 470, 540
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	22, 73, 577
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	3 cut(s)	37, 470, 540
HphI	GGTGA	1 cut(s)	459
Hpy166II	GTNNAC	2 cut(s)	505, 627
Hpy188I	TCNGA	2 cut(s)	190, 621
Hpy188III	TCNNGA	4 cut(s)	198, 297, 383, 540
Hpy8I	GTNNAC	2 cut(s)	505, 627
Hpy99I	CGWCG	1 cut(s)	615
HpyAV	CCTTC	1 cut(s)	504
HpyCH4IV	ACGT	1 cut(s)	629
HpyCH4V	TGCA	5 cut(s)	4, 58, 82, 91, 281
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 88, 479
HpyF3I	CTNAG	3 cut(s)	96, 600, 618
HpySE526I	ACGT	1 cut(s)	629
Hsp92II	CATG	3 cut(s)	22, 73, 577
HspAI	GCGC	1 cut(s)	7
Kpn2I	TCCGGA	1 cut(s)	539
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	229, 310, 340, 536
LmnI	GCTCC	5 cut(s)	73, 133, 169, 177, 542
Lsp1109I	GCAGC	2 cut(s)	16, 469
LweI	GCATC	2 cut(s)	78, 487
MaeI	CTAG	2 cut(s)	546, 634
MaeII	ACGT	1 cut(s)	629
MalI	GATC	4 cut(s)	231, 312, 342, 538
MboI	GATC	4 cut(s)	229, 310, 340, 536
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	2 cut(s)	77, 233
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	415
MluCI	AATT	3 cut(s)	77, 233, 286
MluNI	TGGCCA	1 cut(s)	415
MmeI	TCCRAC	3 cut(s)	111, 195, 298
MnlI	CCTC	7 cut(s)	231, 343, 397, 565, 588, 609, 627
Mox20I	TGGCCA	1 cut(s)	415
MroI	TCCGGA	1 cut(s)	539
MscI	TGGCCA	1 cut(s)	415
MseI	TTAA	1 cut(s)	566
Msp20I	TGGCCA	1 cut(s)	415
MspI	CCGG	3 cut(s)	37, 470, 540
MspR9I	CCNGG	4 cut(s)	176, 326, 393, 516
MunI	CAATTG	2 cut(s)	77, 233
MvaI	CCWGG	4 cut(s)	176, 326, 393, 516
MwoI	GCNNNNNNNGC	3 cut(s)	15, 88, 479
NdeII	GATC	4 cut(s)	229, 310, 340, 536
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	3 cut(s)	22, 73, 577
NlaIV	GGNNCC	2 cut(s)	374, 538
NspI	RCATGY	1 cut(s)	577
PceI	AGGCCT	2 cut(s)	514, 598
PciI	ACATGT	1 cut(s)	573
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	533
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	6, 484
PpuMI	RGGWCCY	1 cut(s)	373
PscI	ACATGT	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	4 cut(s)	174, 324, 391, 514
PspGI	CCWGG	4 cut(s)	174, 324, 391, 514
PspN4I	GGNNCC	2 cut(s)	374, 538
PspPI	GGNCC	3 cut(s)	373, 395, 446
PspPPI	RGGWCCY	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	536
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	2 cut(s)	5, 483
Sau3AI	GATC	4 cut(s)	229, 310, 340, 536
Sau96I	GGNCC	3 cut(s)	373, 395, 446
ScrFI	CCNGG	4 cut(s)	176, 326, 393, 516
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	78, 487
SinI	GGWCC	2 cut(s)	373, 446
Sse9I	AATT	3 cut(s)	77, 233, 286
SseBI	AGGCCT	2 cut(s)	514, 598
SsiI	CCGC	1 cut(s)	370
SspI	AATATT	1 cut(s)	185
SspMI	CTAG	2 cut(s)	546, 634
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	2 cut(s)	514, 598
StyD4I	CCNGG	4 cut(s)	174, 324, 391, 514
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	632
TaqI	TCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	77, 233, 286
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	2 cut(s)	4, 482
TspDTI	ATGAA	3 cut(s)	58, 234, 318
TspRI	CASTG	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	373, 446
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	577
XspI	CTAG	2 cut(s)	546, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.