Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

10178670 .. 10184504

Gene Structure 5835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3276 bp

ATGGGCAATCTGGCGCACCTCGAGAAAATGGGCAGAGAACTCAAATGCCCAATATGTTTGAGTCTGTTTAGTTCAGCCGTTTCGCTGAATTGCAATCATGTCTTCTGCAACTCTTGTATTGTGAAATCAATGAAATCGGGTTCCAATTGTCCTGTTTGTAAGATCCCATTTCAGCGGAGAGAGGTTCGCCCTGCTCCTCATATGGACAATTTGGTTAGTATTTACAAAAGCATGGAGGATGCTTCGGGTATTAACATGTTTATGACTCAAAGTGCGCTGTCAGCTAAATCATCAGATGGAAAGCAGCAAGCTGAAGATGAGAACCCTGATGATCAAGATCCTCCTAAACTTTCTCAGAATAGAGCTGGGAACAGGAGAACCGTAAGAGGGAAAAGATCATGGAAAACTGAATCCAATCTAAAGAACTCTGAATCTGTTTTGGTTAAGCCTTCATTTCCAACCAAGAAAAGGGTTCAGGTTCCACAATGTCCTCCTTCAGAAACCCCTACACGGCCTAAACAGTTACCGGGTGGTTTTATTGATGAAAAGTCGAAGCAGGAGTCTACAACACTAAAGGAGAAGCCTGTTTTAAATGAAAAGGAAGAACTGGTGCTTTCACCTTTCTTTTGGTTGAGTGACAAAGATGCTGAAAATTTGAGTCAGCCTTCTAGTGGTGATCAGCTTAATGATATTCCATCTCCCAATGTTCCTACTTTCAGTGATATCAAGGACTCAGATGATGAAGACTGTTCTAGATTGAGCCCACTGGGCAAAGTGCAGGGGAAATCTTCCAATGTTGCTGATTTTTTTGATAGTGAAATGTTCGAATGGACGCAAAGGCCGTGCTCCCCTGAGCTCTTTGCAAGTCCTTCTAAGATGCAGGTTGTGGATAGTGATCAAATTGATAGAATTCAAGTGAAGGAACTAAAAGAAGCTTTACTAAACAAGAAAATAGGTGAACAAGGCACTGCTGAAAAAGAAAGGTCCAGAAATTCTAGACAGAGTAGTGGAAACTTAATCTTGCTGCCTGATCTTCCACATGATAAAACTGAAGATGCTAATCATCAATTTCTTTGCAAACCATCTAACAAGAGAGGCAGACAAGCAAGAAAAATAGCTAAAAGAAAGTGTGCTACAAGTCATATGGACCTGGTTGAGAATAGTAGTGCTAATTTGAAGGGTTCTGAAGATTTTTATCAAGAACACGGCTGCAAGAATAGTGACAGTTCTATGGCCAAGGCTGGCAAAAGGAAGAAGAAAGCTCATCTGTCTCGGCTCGCAACTAAGCCAACATGTGAAAGTGTTTGCATCCTCTCTATTGGTGCTGAAAGGCAGAATGAAGGCAGTGCTGAGAAGGGGTTAACTGAATTACCTACTTCACTAGAAAAGAATGAAGGCAGTGATGAAGCTTTTGCCCAAGAGAAGGCTAAGAAAATATGTACGGAGATAAATGCCAAGAACCAGATGTGTCGCTCTGTAAGGTCAAGGAAACAAAAGGTGGTCTCTATGCCCAACATACTCGATGAGGTATCGGAAATCAAGAAGCAAGCAAATAAGAATACTGCAACTGAGTCGTCCCATGTAACTGTCCCTACAGATGATAACAGGAAAGTCTCTGACGTCAAGAATATATCCACAAAACTTGCTAGTGAAGCCAAGTCATCTGATCGAGAATTGAAATTCAACAAAAGGGTCAGAGTTTCCTCTGGTGATGACTCAAAGGATAAGGAGGTATCAGAGATCAAGAAGCAAGCAAATAAGAATGCTCCAACTGAGTTGCCCCTTAGAAATCTCCCTACAAATGTTAGCAGGGAACTATCAGGAGTCAGAAAACGTGCTAGAGAAACCAAGTCATGTGATCGAAAAACTACCAAAAAGTTGAGAGTTTCCTTTGATGACAGTTCAAAAGATGAGGCTGTTATTGAGATTCGAGAGGGTCAACATAATGTTAATGAAAATGGTAACCAACCCTCCGAGAAGAGCAAAGGCAATTCCAATGCTAGAATTTTAACTGACCGATCATCAACGCAGAACCTTACTACATTGAAGAATGATGTGGTTTTGAGGAGATGTGATGCCGTTACTAGTAACATTCAATGTGCCTTTTGTCTTTCATCAGAAGAATCAGAGGCATCAGGAGAAATAGTTCACTATTATAATGGCAAGCCTGTTGCTGCAGATCACAATGGAGGGTCCAAGGTTATACATTCACACAGGAACTGCACTGAATGGGCTCCCAACGTATATTTTGAAGATGATATTGCTATGAATCTTGAAGCTGAGCTAACTAGAAGTCGTAGAATTAAATGTTGTTGCTGTGGAATTAAAGGAGCATCTCTTGGGTGTTATGAGAAGAGTTGTCGTAAGAGCTTTCATGTTAGCTGTGCAAAGATGACTCCTGAATGTCGATGGGATTCTGATAATTTTGTTATGTTATGCCCCATTCATGCCTCTTCTAAGTTGCCAAATGAAAGTTCTGAATCTGAAGCAAGGAGGAAGAAGAGCAACCCTAGAAAACAACCTGGTGCCGATCATAATAAAGTTGCTGTTAAACAAGACAGCAATACCTGTCAGGATCTGAAATTTTGTGGATCATCCAAGAAATTGGTTCTCTGTTGTTCAACTCTCACAAATGCAGAGCGGGAATATGTTGCAGAATTTGAAAAATTATCTGGAGTTACAGTCTTAAAGAAGTGGGACTCTAGTATCACACATATTGTTGCGCCAATAGATGAAAATGGAGCATGCAGAAGAACCCTCAAAGTATTGTTGGGAATCTTGGAGGGGAAGTGGATACTGAGCATGGGATGGATTAAAGCTTGCATGGAAGCCATGAAACTAGTGAATGAGGAGCCTTATGAAATTAGCGTTGACATTTATGGAATCAGGGATGGCCCTCGACTTGGTAGACTAAGACTGCAGAACAAGGAACCAAAGCTTTTTGATGGGCTTAAGTTTTACTTCATGGGAGATTTTGTACCTTCATACAAGGGGTATCTACAAGACCTTGTAATAGCTGCTGGAGGAACTGTTTTGCACAGAAAGCCTGTTCCAGAGAGCCAGAAAGGGTCGTCTGGAAGCCCCCTCGAATGTCGAACCTTCATTATCTTTAGTCTTGAGCTACCTGATCAATGTCATCCTAGCAAGAAGGGTACCATTTTCAACCAAAGGCAGGCGGATGCAAAGTCTTTGGCAAGTTCTGCTGGAGCCAATGTAGTAAGCAATTCATGGATTTTGAACTCTGTTGCAGCCTGCAAGTTACAAAATCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

1091

Amino Acids

121.22

Weight (kDa)

8.93

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_6	PF14835	4 - 69	2.9e-06	zf-RING of BARD1-type protein
zf-C3HC4_3	PF13920	13 - 59	5.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	15 - 53	1.3e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	15 - 54	7.3e-08	Ring finger domain
zf-C3HC4	PF00097	16 - 53	2.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	16 - 51	3.7e-07	RING-type zinc-finger
zf-C3HC4_4	PF15227	16 - 53	9.6e-07	zinc finger of C3HC4-type, RING
zf-HC5HC2H	PF13771	738 - 816	3.8e-09	PHD-like zinc-binding domain
BRCT	PF00533	868 - 942	1.2e-08	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	979 - 1090	4.5e-08	BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2157
AatII	GACGTC	1 cut(s)	1623
Acc36I	ACCTGC	1 cut(s)	871
Acc65I	GGTACC	1 cut(s)	3152
AccB1I	GGYRCC	2 cut(s)	2525, 3152
AccBSI	CCGCTC	1 cut(s)	2641
AccI	GTMKAC	2 cut(s)	563, 2908
AciI	CCGC	3 cut(s)	175, 2641, 3176
AclWI	GGATC	4 cut(s)	157, 332, 2583, 2599
AcoI	YGGCCR	1 cut(s)	1233
AcsI	RAATTY	7 cut(s)	652, 909, 991, 1679, 2004, 2582, 2657
AcuI	CTGAAG	5 cut(s)	333, 480, 1071, 1206, 2505
AcyI	GRCGYC	1 cut(s)	1620
AfaI	GTAC	3 cut(s)	1441, 2979, 3154
AfiI	CCNNNNNNNGG	7 cut(s)	387, 468, 510, 671, 1423, 2903, 3172
AflII	CTTAAG	1 cut(s)	2951
AflIII	ACRYGT	2 cut(s)	255, 1292
AhlI	ACTAGT	2 cut(s)	2084, 2839
AjnI	CCWGG	2 cut(s)	1149, 2521
AjuI	GAANNNNNNNTTGG	2 cut(s)	2458, 2490
AloI	GAACNNNNNNTCC	2 cut(s)	2130, 2162
Alw21I	GWGCWC	2 cut(s)	848, 858
Alw26I	GTCTC	3 cut(s)	1275, 1507, 1618
AlwI	GGATC	4 cut(s)	157, 332, 2583, 2599
AlwNI	CAGNNNCTG	2 cut(s)	2220, 2578
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	4 cut(s)	512, 839, 1233, 2893
ApeKI	GCWGC	6 cut(s)	304, 1024, 1209, 2174, 3017, 3248
ApoI	RAATTY	7 cut(s)	652, 909, 991, 1679, 2004, 2582, 2657
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
Asp700I	GAANNNNTTC	1 cut(s)	2145
Asp718I	GGTACC	1 cut(s)	3152
AspLEI	GCGC	3 cut(s)	16, 277, 2725
AspS9I	GGNCC	4 cut(s)	984, 1147, 2193, 2894
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	4 cut(s)	609, 686, 968, 1721
AsuII	TTCGAA	1 cut(s)	825
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	3 cut(s)	984, 1147, 2193
BaeI	ACNNNNGTAYC	2 cut(s)	2689, 2722
BalI	TGGCCA	1 cut(s)	1235
BanI	GGYRCC	2 cut(s)	2525, 3152
BanII	GRGCYC	3 cut(s)	764, 858, 2236
BbsI	GAAGAC	2 cut(s)	94, 750
Bbv12I	GWGCWC	2 cut(s)	848, 858
BbvI	GCAGC	6 cut(s)	316, 1011, 1196, 2161, 3004, 3260
BccI	CCATC	7 cut(s)	290, 703, 1090, 2403, 2802, 2885, 2939
BceAI	ACGGC	5 cut(s)	62, 527, 826, 1222, 2063
BcgI	CGANNNNNNTGC	2 cut(s)	1554, 1588
BciT130I	CCWGG	2 cut(s)	1151, 2523
BciVI	GTATCC	1 cut(s)	2787
BclI	TGATCA	4 cut(s)	331, 676, 895, 3127
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	3 cut(s)	1275, 1507, 1618
BcuI	ACTAGT	2 cut(s)	2084, 2839
BfmI	CTRYAG	3 cut(s)	1593, 2175, 2918
BfrI	CTTAAG	1 cut(s)	2951
BfuAI	ACCTGC	1 cut(s)	871
BfuI	GTATCC	1 cut(s)	2787
BglI	GCCNNNNNGGC	1 cut(s)	768
BisI	GCNGC	6 cut(s)	305, 1025, 1210, 2175, 3018, 3249
BlpI	GCTNAGC	1 cut(s)	2280
BlsI	GCNGC	6 cut(s)	306, 1026, 1211, 2176, 3019, 3250
Bme1390I	CCNGG	3 cut(s)	528, 1151, 2523
Bme18I	GGWCC	3 cut(s)	984, 1147, 2193
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	4 cut(s)	984, 1147, 2193, 2894
BmiI	GGNNCC	9 cut(s)	142, 480, 2194, 2235, 2527, 2853, 2931, 3154, 3208
BmrFI	CCNGG	3 cut(s)	528, 1151, 2523
BmrI	ACTGGG	1 cut(s)	776
BmsI	GCATC	9 cut(s)	229, 634, 867, 1045, 1317, 2065, 2141, 2342, 3169
BmuI	ACTGGG	1 cut(s)	776
BpiI	GAAGAC	2 cut(s)	94, 750
BpmI	CTGGAG	3 cut(s)	2694, 3042, 3225
Bpu10I	CCTNAGC	1 cut(s)	852
Bpu1102I	GCTNAGC	1 cut(s)	2280
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	3137
BpuMI	CCSGG	1 cut(s)	528
BsaBI	GATNNNNATC	4 cut(s)	336, 894, 1059, 1194
BsaHI	GRCGYC	1 cut(s)	1620
BsaI	GGTCTC	1 cut(s)	1507
BsaJI	CCNNGG	2 cut(s)	1236, 2196
Bsc4I	CCNNNNNNNGG	7 cut(s)	387, 468, 510, 671, 1423, 2903, 3172
Bse1I	ACTGG	2 cut(s)	612, 771
Bse8I	GATNNNNATC	4 cut(s)	336, 894, 1059, 1194
BseBI	CCWGG	2 cut(s)	1151, 2523
BseDI	CCNNGG	2 cut(s)	1236, 2196
BseGI	GGATG	7 cut(s)	244, 1308, 2594, 2813, 2896, 3136, 3184
BseJI	GATNNNNATC	4 cut(s)	336, 894, 1059, 1194
BseLI	CCNNNNNNNGG	7 cut(s)	387, 468, 510, 671, 1423, 2903, 3172
BseMII	CTCAG	8 cut(s)	368, 747, 843, 1341, 1560, 1764, 2271, 2789
BseNI	ACTGG	2 cut(s)	612, 771
BseRI	GAGGAG	3 cut(s)	186, 2080, 2864
BseXI	GCAGC	6 cut(s)	316, 1011, 1196, 2161, 3004, 3260
BseYI	CCCAGC	1 cut(s)	365
BsgI	GTGCAG	2 cut(s)	797, 2206
BshFI	GGCC	4 cut(s)	514, 841, 1235, 2895
BshNI	GGYRCC	2 cut(s)	2525, 3152
BsiHKAI	GWGCWC	2 cut(s)	848, 858
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	3 cut(s)	1561, 1574, 2711
BslI	CCNNNNNNNGG	7 cut(s)	387, 468, 510, 671, 1423, 2903, 3172
BsmAI	GTCTC	3 cut(s)	1275, 1507, 1618
BsmFI	GGGAC	3 cut(s)	1561, 1574, 2711
BsmI	GAATGC	1 cut(s)	1768
BsnI	GGCC	4 cut(s)	514, 841, 1235, 2895
Bso31I	GGTCTC	1 cut(s)	1507
BsoBI	CYCGRG	1 cut(s)	20
Bsp119I	TTCGAA	1 cut(s)	825
Bsp1286I	GDGCHC	4 cut(s)	764, 848, 858, 2236
Bsp1720I	GCTNAGC	1 cut(s)	2280
BspACI	CCGC	3 cut(s)	175, 2641, 3176
BspANI	GGCC	4 cut(s)	514, 841, 1235, 2895
BspCNI	CTCAG	8 cut(s)	367, 746, 844, 1342, 1561, 1765, 2272, 2790
BspLI	GGNNCC	9 cut(s)	142, 480, 2194, 2235, 2527, 2853, 2931, 3154, 3208
BspMAI	CTGCAG	2 cut(s)	2179, 2922
BspMI	ACCTGC	1 cut(s)	871
BspPI	GGATC	4 cut(s)	157, 332, 2583, 2599
BspQI	GCTCTTC	2 cut(s)	1973, 2495
BspT104I	TTCGAA	1 cut(s)	825
BspT107I	GGYRCC	2 cut(s)	2525, 3152
BspTI	CTTAAG	1 cut(s)	2951
BspTNI	GGTCTC	1 cut(s)	1507
BsrBI	CCGCTC	1 cut(s)	2641
BsrI	ACTGG	2 cut(s)	612, 771
BssECI	CCNNGG	2 cut(s)	1236, 2196
BssNI	GRCGYC	1 cut(s)	1620
BssT1I	CCWWGG	2 cut(s)	1236, 2196
Bst2UI	CCWGG	2 cut(s)	1151, 2523
Bst4CI	ACNGT	8 cut(s)	382, 522, 749, 1226, 1588, 1901, 2683, 3031
Bst6I	CTCTTC	4 cut(s)	1973, 2348, 2458, 2495
BstACI	GRCGYC	1 cut(s)	1620
BstAFI	CTTAAG	1 cut(s)	2951
BstAPI	GCANNNNNTGC	1 cut(s)	3200
BstBI	TTCGAA	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	1961
BstF5I	GGATG	7 cut(s)	244, 1308, 2594, 2813, 2896, 3136, 3184
BstHHI	GCGC	3 cut(s)	16, 277, 2725
BstMAI	GTCTC	3 cut(s)	1275, 1507, 1618
BstMWI	GCNNNNNNNGC	5 cut(s)	281, 768, 1652, 3043, 3200
BstNI	CCWGG	2 cut(s)	1151, 2523
BstNSI	RCATGY	3 cut(s)	259, 1296, 2748
BstPI	GGTNACC	1 cut(s)	1961
BstSCI	CCNGG	3 cut(s)	526, 1149, 2521
BstSFI	CTRYAG	3 cut(s)	1593, 2175, 2918
BstV1I	GCAGC	6 cut(s)	316, 1011, 1196, 2161, 3004, 3260
BstV2I	GAAGAC	2 cut(s)	94, 750
BstX2I	RGATCY	3 cut(s)	162, 337, 2575
BstXI	CCANNNNNNTGG	1 cut(s)	2605
BstYI	RGATCY	3 cut(s)	162, 337, 2575
BsuI	GTATCC	1 cut(s)	2787
BsuRI	GGCC	4 cut(s)	514, 841, 1235, 2895
BtsCI	GGATG	7 cut(s)	244, 1308, 2594, 2813, 2896, 3136, 3184
BtsI	GCAGTG	3 cut(s)	966, 1351, 1405
BtsIMutI	CAGTG	6 cut(s)	724, 764, 966, 1351, 1405, 2223
BveI	ACCTGC	1 cut(s)	871
CaiI	CAGNNNCTG	2 cut(s)	2220, 2578
CfoI	GCGC	3 cut(s)	16, 277, 2725
Cfr13I	GGNCC	4 cut(s)	984, 1147, 2193, 2894
CseI	GACGC	1 cut(s)	841
CsiI	ACCWGGT	2 cut(s)	1149, 2521
Csp6I	GTAC	3 cut(s)	1440, 2978, 3153
CspCI	CAANNNNNGTGG	2 cut(s)	1624, 1659
CviQI	GTAC	3 cut(s)	1440, 2978, 3153
DraI	TTTAAA	1 cut(s)	591
EaeI	YGGCCR	1 cut(s)	1233
Eam1104I	CTCTTC	4 cut(s)	1973, 2348, 2458, 2495
EarI	CTCTTC	4 cut(s)	1973, 2348, 2458, 2495
EciI	GGCGGA	1 cut(s)	3191
Ecl136II	GAGCTC	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	1236, 2196
Eco24I	GRGCYC	3 cut(s)	764, 858, 2236
Eco31I	GGTCTC	1 cut(s)	1507
Eco32I	GATATC	1 cut(s)	724
Eco47I	GGWCC	3 cut(s)	984, 1147, 2193
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	5 cut(s)	333, 480, 1071, 1206, 2505
Eco88I	CYCGRG	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	1961
EcoICRI	GAGCTC	1 cut(s)	856
EcoO65I	GGTNACC	1 cut(s)	1961
EcoRI	GAATTC	1 cut(s)	909
EcoRII	CCWGG	2 cut(s)	1149, 2521
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	2 cut(s)	1236, 2196
EcoT38I	GRGCYC	3 cut(s)	764, 858, 2236
ErhI	CCWWGG	2 cut(s)	1236, 2196
FalI	AAGNNNNNCTT	2 cut(s)	2945, 2977
FaqI	GGGAC	3 cut(s)	1561, 1574, 2711
FauI	CCCGC	1 cut(s)	2634
FauNDI	CATATG	2 cut(s)	201, 1143
FbaI	TGATCA	4 cut(s)	331, 676, 895, 3127
FblI	GTMKAC	2 cut(s)	563, 2908
Fnu4HI	GCNGC	6 cut(s)	305, 1025, 1210, 2175, 3018, 3249
FokI	GGATG	7 cut(s)	251, 1295, 2581, 2820, 2903, 3123, 3191
FriOI	GRGCYC	3 cut(s)	764, 858, 2236
Fsp4HI	GCNGC	6 cut(s)	305, 1025, 1210, 2175, 3018, 3249
GlaI	GCGC	3 cut(s)	15, 276, 2724
GluI	GCNGC	6 cut(s)	305, 1025, 1210, 2175, 3018, 3249
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	3 cut(s)	2694, 3042, 3225
HaeIII	GGCC	4 cut(s)	514, 841, 1235, 2895
HapII	CCGG	1 cut(s)	527
HgaI	GACGC	1 cut(s)	841
HhaI	GCGC	3 cut(s)	16, 277, 2725
Hin1I	GRCGYC	1 cut(s)	1620
Hin6I	GCGC	3 cut(s)	14, 275, 2723
HinP1I	GCGC	3 cut(s)	14, 275, 2723
HincII	GTYRAC	3 cut(s)	1362, 1940, 2872
HindII	GTYRAC	3 cut(s)	1362, 1940, 2872
HindIII	AAGCTT	4 cut(s)	933, 1407, 2817, 2936
HpaI	GTTAAC	1 cut(s)	1362
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	4 cut(s)	609, 686, 968, 1721
Hpy166II	GTNNAC	7 cut(s)	564, 959, 1362, 1940, 2149, 2872, 2909
Hpy8I	GTNNAC	7 cut(s)	564, 959, 1362, 1940, 2149, 2872, 2909
HpyCH4III	ACNGT	8 cut(s)	382, 522, 749, 1226, 1588, 1901, 2683, 3031
HpyCH4IV	ACGT	3 cut(s)	1620, 1834, 2241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	281, 768, 1652, 3043, 3200
HpySE526I	ACGT	3 cut(s)	1620, 1834, 2241
Hsp92I	GRCGYC	1 cut(s)	1620
HspAI	GCGC	3 cut(s)	14, 275, 2723
KpnI	GGTACC	1 cut(s)	3156
Ksp22I	TGATCA	4 cut(s)	331, 676, 895, 3127
KspAI	GTTAAC	1 cut(s)	1362
LguI	GCTCTTC	2 cut(s)	1973, 2495
LmnI	GCTCC	8 cut(s)	199, 851, 1771, 2239, 2330, 2741, 2851, 3206
Lsp1109I	GCAGC	6 cut(s)	316, 1011, 1196, 2161, 3004, 3260
LweI	GCATC	9 cut(s)	229, 634, 867, 1045, 1317, 2065, 2141, 2342, 3169
MabI	ACCWGGT	2 cut(s)	1149, 2521
MaeII	ACGT	3 cut(s)	1620, 1834, 2241
MaeIII	GTNAC	9 cut(s)	522, 635, 1220, 1582, 1961, 2080, 2087, 2677, 3258
MbiI	CCGCTC	1 cut(s)	2641
MfeI	CAATTG	1 cut(s)	145
MflI	RGATCY	3 cut(s)	162, 337, 2575
MhlI	GDGCHC	4 cut(s)	764, 848, 858, 2236
MlsI	TGGCCA	1 cut(s)	1235
MluNI	TGGCCA	1 cut(s)	1235
MmeI	TCCRAC	2 cut(s)	482, 1793
Mox20I	TGGCCA	1 cut(s)	1235
MroXI	GAANNNNTTC	1 cut(s)	2145
MscI	TGGCCA	1 cut(s)	1235
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	1235
MspA1I	CMGCKG	1 cut(s)	175
MspCI	CTTAAG	1 cut(s)	2951
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	3 cut(s)	528, 1151, 2523
MunI	CAATTG	1 cut(s)	145
Mva1269I	GAATGC	1 cut(s)	1768
MvaI	CCWGG	2 cut(s)	1151, 2523
MwoI	GCNNNNNNNGC	5 cut(s)	281, 768, 1652, 3043, 3200
NciI	CCSGG	1 cut(s)	528
NdeI	CATATG	2 cut(s)	201, 1143
NlaIV	GGNNCC	9 cut(s)	142, 480, 2194, 2235, 2527, 2853, 2931, 3154, 3208
NmeAIII	GCCGAG	1 cut(s)	1252
NmuCI	GTSAC	2 cut(s)	635, 1220
NspI	RCATGY	3 cut(s)	259, 1296, 2748
NspV	TTCGAA	1 cut(s)	825
PaeI	GCATGC	1 cut(s)	2748
PaeR7I	CTCGAG	1 cut(s)	20
PciI	ACATGT	2 cut(s)	255, 1292
PciSI	GCTCTTC	2 cut(s)	1973, 2495
PcsI	WCGNNNNNNNCGW	1 cut(s)	839
PctI	GAATGC	1 cut(s)	1768
PdmI	GAANNNNTTC	1 cut(s)	2145
PfeI	GAWTC	9 cut(s)	410, 431, 1927, 2123, 2269, 2414, 2480, 2775, 2883
PkrI	GCNGC	6 cut(s)	306, 1026, 1211, 2176, 3019, 3250
PscI	ACATGT	2 cut(s)	255, 1292
PsiI	TTATAA	1 cut(s)	2157
Psp124BI	GAGCTC	1 cut(s)	858
Psp6I	CCWGG	2 cut(s)	1149, 2521
PspEI	GGTNACC	1 cut(s)	1961
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	2 cut(s)	1149, 2521
PspN4I	GGNNCC	9 cut(s)	142, 480, 2194, 2235, 2527, 2853, 2931, 3154, 3208
PspPI	GGNCC	4 cut(s)	984, 1147, 2193, 2894
PstI	CTGCAG	2 cut(s)	2179, 2922
PstNI	CAGNNNCTG	2 cut(s)	2220, 2578
PsuI	RGATCY	3 cut(s)	162, 337, 2575
RsaI	GTAC	3 cut(s)	1441, 2979, 3154
RsaNI	GTAC	3 cut(s)	1440, 2978, 3153
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	858
SapI	GCTCTTC	2 cut(s)	1973, 2495
SatI	GCNGC	6 cut(s)	305, 1025, 1210, 2175, 3018, 3249
Sau96I	GGNCC	4 cut(s)	984, 1147, 2193, 2894
ScrFI	CCNGG	3 cut(s)	528, 1151, 2523
SduI	GDGCHC	4 cut(s)	764, 848, 858, 2236
SexAI	ACCWGGT	2 cut(s)	1149, 2521
SfaNI	GCATC	9 cut(s)	229, 634, 867, 1045, 1317, 2065, 2141, 2342, 3169
SfcI	CTRYAG	3 cut(s)	1593, 2175, 2918
Sfr274I	CTCGAG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	825
SinI	GGWCC	3 cut(s)	984, 1147, 2193
SlaI	CTCGAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	260
SmlI	CTYRAG	3 cut(s)	20, 2951, 3116
SmoI	CTYRAG	3 cut(s)	20, 2951, 3116
SpeI	ACTAGT	2 cut(s)	2084, 2839
SphI	GCATGC	1 cut(s)	2748
SsiI	CCGC	3 cut(s)	175, 2641, 3176
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	3 cut(s)	526, 1149, 2521
StyI	CCWWGG	2 cut(s)	1236, 2196
TaaI	ACNGT	8 cut(s)	382, 522, 749, 1226, 1588, 1901, 2683, 3031
TaiI	ACGT	3 cut(s)	1623, 1837, 2244
TaqII	GACCGA	1 cut(s)	2031
TfiI	GAWTC	9 cut(s)	410, 431, 1927, 2123, 2269, 2414, 2480, 2775, 2883
TscAI	CASTG	6 cut(s)	724, 771, 973, 1351, 1405, 2230
TseFI	GTSAC	2 cut(s)	635, 1220
TseI	GCWGC	6 cut(s)	304, 1024, 1209, 2174, 3017, 3248
Tsp45I	GTSAC	2 cut(s)	635, 1220
TspGWI	ACGGA	1 cut(s)	1457
TspRI	CASTG	6 cut(s)	724, 771, 973, 1351, 1405, 2230
Vha464I	CTTAAG	1 cut(s)	2951
VpaK11BI	GGWCC	3 cut(s)	984, 1147, 2193
XapI	RAATTY	7 cut(s)	652, 909, 991, 1679, 2004, 2582, 2657
XbaI	TCTAGA	2 cut(s)	752, 995
XceI	RCATGY	3 cut(s)	259, 1296, 2748
XhoI	CTCGAG	1 cut(s)	20
XmiI	GTMKAC	2 cut(s)	563, 2908
XmnI	GAANNNNTTC	1 cut(s)	2145
ZraI	GACGTC	1 cut(s)	1621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.