Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

20338554 .. 20339981

Gene Structure 1428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCAGTTGCCTTATTTTCATTTTTCCCATCTCATTTTTGCTTTCCTCTTGGCAGTCATATGAAAGCTTTTGATATCAATCCAAATGATGAATGCACAAGTAGCGAGTACAAGTCAGTTAAACGATCTGCCATCCAACCTTCGACCAATTTCTTTTCAAGAAACGAACCTGATATTTTCTCAAACCAAGCTGACATTATGATGGTTAACAGAGAAGCTGTAAGAAAAGTTGACTTATTTCTTGCAGATTGGTCGGTTCTTGCTCCTGAAACTCCAGGGCCGAAGGAGGATATATGGCCAGCGAGACAGAATAGTTCAAACTCCGGGGGACCTTTTGACATCACGCTGGAATCACCAGCAAAACAAGCTGCCATTCCAGTTGATGCTTGGAACAGAAGGGCTGGTGGTCACCTTATGTTTGGAAACGGAGCTAGCAACCCATCCATAATGTCTCTAAGGAACATGATACTCTCCCCAATAAAGAGGCCTCAGCTCTCCCGCCACCCCCAGATGTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

174

Amino Acids

19.3

Weight (kDa)

7.84

Isoelectric Point (pI)

58.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	296
AfaI	GTAC	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	159, 318
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	6 cut(s)	68, 191, 218, 368, 431, 493
AluI	AGCT	6 cut(s)	68, 191, 218, 368, 431, 493
Alw26I	GTCTC	2 cut(s)	298, 456
AoxI	GGCC	3 cut(s)	278, 296, 485
ApeKI	GCWGC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	278, 329
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	345, 401
AsuNHI	GCTAGC	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	329
BalI	TGGCCA	1 cut(s)	298
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	4 cut(s)	37, 140, 196, 448
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	298, 456
BfaI	CTAG	1 cut(s)	432
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	2 cut(s)	276, 325
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	278, 329
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	2 cut(s)	276, 325
BmsI	GCATC	1 cut(s)	373
BmtI	GCTAGC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	489
BpuMI	CCSGG	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	275, 324
Bse1I	ACTGG	1 cut(s)	377
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	275, 324
BseGI	GGATG	2 cut(s)	132, 440
BseJI	GATNNNNATC	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	3 cut(s)	280, 298, 487
BsiSI	CCGG	1 cut(s)	324
BslFI	GGGAC	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	298, 456
BsmFI	GGGAC	1 cut(s)	342
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	280, 298, 487
Bsp143I	GATC	1 cut(s)	125
BspACI	CCGC	1 cut(s)	499
BspANI	GGCC	3 cut(s)	280, 298, 487
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	330
BspOI	GCTAGC	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	2 cut(s)	275, 324
BssMI	GATC	1 cut(s)	125
Bst2UI	CCWGG	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	300, 433
BstDEI	CTNAG	2 cut(s)	455, 489
BstEII	GGTNACC	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	132, 440
BstKTI	GATC	1 cut(s)	128
BstMAI	GTCTC	2 cut(s)	298, 456
BstMBI	GATC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 365
BstNI	CCWGG	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	274, 323
BstV1I	GCAGC	1 cut(s)	355
BsuRI	GGCC	3 cut(s)	280, 298, 487
BtsCI	GGATG	2 cut(s)	132, 440
Cac8I	GCNNGC	2 cut(s)	300, 433
Cfr13I	GGNCC	2 cut(s)	278, 329
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	463, 517
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	2 cut(s)	455, 489
DpnI	GATC	1 cut(s)	127
DpnII	GATC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	296
Eco147I	AGGCCT	1 cut(s)	487
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	329
Eco91I	GGTNACC	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	2 cut(s)	466, 520
FaiI	YATR	9 cut(s)	60, 62, 200, 293, 295, 416, 446, 464, 518
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	2 cut(s)	462, 516
FauI	CCCGC	1 cut(s)	506
FauNDI	CATATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	2 cut(s)	119, 427
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	280, 298, 487
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	2 cut(s)	466, 520
HincII	GTYRAC	2 cut(s)	208, 232
HindII	GTYRAC	2 cut(s)	208, 232
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	1 cut(s)	350
HpaI	GTTAAC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	2 cut(s)	345, 401
Hpy166II	GTNNAC	2 cut(s)	208, 232
Hpy188III	TCNNGA	2 cut(s)	159, 266
Hpy8I	GTNNAC	2 cut(s)	208, 232
HpyAV	CCTTC	3 cut(s)	150, 277, 390
HpyCH4V	TGCA	2 cut(s)	96, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 365
HpyF3I	CTNAG	2 cut(s)	455, 489
Hsp92II	CATG	2 cut(s)	466, 520
KspAI	GTTAAC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	268, 428
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	1 cut(s)	127
MboI	GATC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	1 cut(s)	148
MluNI	TGGCCA	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	57, 280, 477, 498
Mox20I	TGGCCA	1 cut(s)	298
MscI	TGGCCA	1 cut(s)	298
MseI	TTAA	2 cut(s)	120, 207
MslI	CAYNNNNRTG	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	298
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	276, 325
Mva1269I	GAATGC	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	102, 365
NciI	CCSGG	1 cut(s)	325
NdeI	CATATG	1 cut(s)	60
NdeII	GATC	1 cut(s)	125
NheI	GCTAGC	1 cut(s)	431
NlaIII	CATG	2 cut(s)	466, 520
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	278, 329
PspPPI	RGGWCCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	120, 207
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	1 cut(s)	125
Sau96I	GGNCC	2 cut(s)	278, 329
ScrFI	CCNGG	2 cut(s)	276, 325
SfaNI	GCATC	1 cut(s)	373
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	200
Sse9I	AATT	1 cut(s)	148
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	1 cut(s)	499
SspMI	CTAG	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	2 cut(s)	274, 323
TaqI	TCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	2 cut(s)	120, 207
Tru9I	TTAA	2 cut(s)	120, 207
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	4 cut(s)	9, 77, 105, 505
TspGWI	ACGGA	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.