Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Reverse (-)

8963282 .. 8968364

Gene Structure 5083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G156500.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGATGCAATGCGTGTTGGCGAGAAGTAGAAGGGCGAGCTGTTTCCACCACCTGTGGCCACCTTTTGTGCACAGAGGATGCCAGCAAGATCCTTGGCAATGATGGAGCATGTCCCATTTGTGATCAAGTGCTCTCTAAGAGTCTTATGAAACCTGTGGATATCAATCCAAACGATGAATGGGTAAATATGGCCATGGCTGGAGTGTCTCCACAGATATTAATGAAGAGTGCACACAGGAGTATCATGTTTTACATTGGGCAAAAGGAACTGGAAATGCAGTTCAAGATGAACAGAATAGTAGCTCAATTCCGGCAGAAATGTGAAGCAATGCAAGAAAAGTTCACTGAGAAATTGGAACAGGTGCATACTGCATACCAGAAAATGGCGAAGAGGTGTCAAATGATGGAACAAGAGATTGAAAGCTTGTCCAAAGATAAGCAGGAGCTCCAGGAAAAATTTGCAGAGAAATCCAGACAGAAGAGAAAACTAGATGAAATGTATGATCAATTGAGGAGTGAGTACGAGTCAGTTAAACGATCCGCCCTTCAACCTGCGACCAATTTCTATTCAAGAAATGAGCCTGATCTTTTCTCAAACCAAGCTAACATCTTGGATAACAGAGAAGCTGTTAGAAAAGTTGACTTATTTCTTGCAGATTGGCCGGTTCTCACTCCTGAAACTCCAGGGCCAAAGGAGGATATATGGCCAGCAAGACAGAATAGTTCAAACTCTGGTGGTCCTTTTGACATCTCTGTTGGCTCACCGGCAAAACAAGCTGCTATTCCAGTTGATGCTGTGAACAGAAGGGCTGGTGCTCACCCTATGTTTGGAACTGGAGCTAGCAACCCCTCAATGACCTTAAGGAACTTGATACTCTCCCCAATAAAGAGGCCTCAGCTCTCTCGTAACCGTCCCCAGATGTTCACGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

312

Amino Acids

35.37

Weight (kDa)

8.71

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	385
AciI	CCGC	1 cut(s)	543
AclWI	GGATC	2 cut(s)	85, 534
AcoI	YGGCCR	4 cut(s)	58, 192, 662, 707
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	385, 830
AflII	CTTAAG	1 cut(s)	862
AgsI	TTSAA	5 cut(s)	286, 422, 551, 573, 729
AjnI	CCWGG	2 cut(s)	450, 685
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	9 cut(s)	41, 305, 426, 448, 605, 629, 779, 842, 901
AluI	AGCT	9 cut(s)	41, 305, 426, 448, 605, 629, 779, 842, 901
Alw21I	GWGCWC	5 cut(s)	74, 135, 235, 450, 820
Alw26I	GTCTC	1 cut(s)	213
Alw44I	GTGCAC	2 cut(s)	70, 231
AlwI	GGATC	2 cut(s)	85, 534
AoxI	GGCC	6 cut(s)	58, 192, 662, 689, 707, 893
ApaLI	GTGCAC	2 cut(s)	70, 231
ApeKI	GCWGC	1 cut(s)	779
ApoI	RAATTY	1 cut(s)	458
AseI	ATTAAT	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	689, 740
AsuHPI	GGTGA	2 cut(s)	756, 812
AsuNHI	GCTAGC	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	740
BaeGI	GKGCMC	2 cut(s)	74, 235
BaeI	ACNNNNGTAYC	2 cut(s)	226, 259
BalI	TGGCCA	3 cut(s)	60, 194, 709
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	5 cut(s)	74, 135, 235, 450, 820
BbvCI	CCTCAGC	1 cut(s)	897
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	2 cut(s)	98, 400
BciT130I	CCWGG	2 cut(s)	452, 687
BclI	TGATCA	2 cut(s)	124, 505
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	3 cut(s)	491, 843, 934
BfrI	CTTAAG	1 cut(s)	862
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	1 cut(s)	780
BlsI	GCNGC	1 cut(s)	781
Bme1390I	CCNGG	2 cut(s)	452, 687
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	2 cut(s)	689, 740
BmrFI	CCNGG	2 cut(s)	452, 687
BmsI	GCATC	2 cut(s)	70, 784
BmtI	GCTAGC	1 cut(s)	846
BpmI	CTGGAG	4 cut(s)	222, 434, 669, 858
Bpu10I	CCTNAGC	1 cut(s)	897
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	3 cut(s)	94, 195, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 830
Bse118I	RCCGGY	2 cut(s)	664, 766
Bse1I	ACTGG	3 cut(s)	276, 788, 841
Bse3DI	GCAATG	3 cut(s)	16, 106, 336
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	2 cut(s)	452, 687
BseDI	CCNNGG	3 cut(s)	94, 195, 686
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	2 cut(s)	385, 830
BseMI	GCAATG	3 cut(s)	16, 106, 336
BseMII	CTCAG	2 cut(s)	339, 911
BseNI	ACTGG	3 cut(s)	276, 788, 841
BseRI	GAGGAG	1 cut(s)	529
BseSI	GKGCMC	2 cut(s)	74, 235
BseXI	GCAGC	1 cut(s)	766
BshFI	GGCC	6 cut(s)	60, 194, 664, 691, 709, 895
BsiHKAI	GWGCWC	5 cut(s)	74, 135, 235, 450, 820
BsiSI	CCGG	3 cut(s)	313, 665, 767
BslFI	GGGAC	2 cut(s)	99, 900
BslI	CCNNNNNNNGG	2 cut(s)	385, 830
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	2 cut(s)	99, 900
BsnI	GGCC	6 cut(s)	60, 194, 664, 691, 709, 895
Bsp1286I	GDGCHC	5 cut(s)	74, 135, 235, 450, 820
Bsp143I	GATC	5 cut(s)	90, 124, 505, 539, 586
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	543
BspANI	GGCC	6 cut(s)	60, 194, 664, 691, 709, 895
BspCNI	CTCAG	2 cut(s)	340, 910
BspMI	ACCTGC	1 cut(s)	562
BspOI	GCTAGC	1 cut(s)	846
BspPI	GGATC	2 cut(s)	85, 534
BspTI	CTTAAG	1 cut(s)	862
BsrDI	GCAATG	3 cut(s)	16, 106, 336
BsrFI	RCCGGY	2 cut(s)	664, 766
BsrI	ACTGG	3 cut(s)	276, 788, 841
BssAI	RCCGGY	2 cut(s)	664, 766
BssECI	CCNNGG	3 cut(s)	94, 195, 686
BssMI	GATC	5 cut(s)	90, 124, 505, 539, 586
BssT1I	CCWWGG	2 cut(s)	94, 195
Bst2UI	CCWGG	2 cut(s)	452, 687
Bst4CI	ACNGT	1 cut(s)	914
Bst6I	CTCTTC	3 cut(s)	221, 386, 476
BstAFI	CTTAAG	1 cut(s)	862
BstC8I	GCNNGC	4 cut(s)	39, 85, 711, 844
BstDEI	CTNAG	3 cut(s)	138, 348, 897
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	5 cut(s)	93, 127, 508, 542, 589
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	5 cut(s)	90, 124, 505, 539, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	776
BstNI	CCWGG	2 cut(s)	452, 687
BstNSI	RCATGY	1 cut(s)	114
BstSCI	CCNGG	2 cut(s)	450, 685
BstSLI	GKGCMC	2 cut(s)	74, 235
BstV1I	GCAGC	1 cut(s)	766
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuRI	GGCC	6 cut(s)	60, 194, 664, 691, 709, 895
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	4 cut(s)	39, 85, 711, 844
Cfr10I	RCCGGY	2 cut(s)	664, 766
Cfr13I	GGNCC	2 cut(s)	689, 740
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	3 cut(s)	111, 196, 247
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	3 cut(s)	138, 348, 897
DpnI	GATC	5 cut(s)	92, 126, 507, 541, 588
DpnII	GATC	5 cut(s)	90, 124, 505, 539, 586
EaeI	YGGCCR	4 cut(s)	58, 192, 662, 707
Eam1104I	CTCTTC	3 cut(s)	221, 386, 476
EarI	CTCTTC	3 cut(s)	221, 386, 476
EciI	GGCGGA	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	2 cut(s)	94, 195
Eco147I	AGGCCT	1 cut(s)	895
Eco24I	GRGCYC	1 cut(s)	450
Eco32I	GATATC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	740
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	450, 685
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	2 cut(s)	94, 195
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	2 cut(s)	94, 195
FaeI	CATG	3 cut(s)	114, 199, 250
FaqI	GGGAC	2 cut(s)	99, 900
FatI	CATG	3 cut(s)	110, 195, 246
FbaI	TGATCA	2 cut(s)	124, 505
Fnu4HI	GCNGC	1 cut(s)	780
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	1 cut(s)	780
FspBI	CTAG	3 cut(s)	491, 843, 934
GluI	GCNGC	1 cut(s)	780
GsuI	CTGGAG	4 cut(s)	222, 434, 669, 858
HaeIII	GGCC	6 cut(s)	60, 194, 664, 691, 709, 895
HapII	CCGG	3 cut(s)	313, 665, 767
Hin1II	CATG	3 cut(s)	114, 199, 250
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	2 cut(s)	142, 527
HpaII	CCGG	3 cut(s)	313, 665, 767
HphI	GGTGA	2 cut(s)	756, 812
Hpy166II	GTNNAC	6 cut(s)	72, 233, 345, 643, 802, 927
Hpy188III	TCNNGA	4 cut(s)	286, 474, 573, 677
Hpy8I	GTNNAC	6 cut(s)	72, 233, 345, 643, 802, 927
HpyAV	CCTTC	3 cut(s)	26, 557, 801
HpyCH4III	ACNGT	1 cut(s)	914
HpyCH4IV	ACGT	1 cut(s)	929
HpyCH4V	TGCA	9 cut(s)	9, 72, 233, 280, 334, 367, 374, 464, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	776
HpyF3I	CTNAG	3 cut(s)	138, 348, 897
HpySE526I	ACGT	1 cut(s)	929
Hsp92II	CATG	3 cut(s)	114, 199, 250
Ksp22I	TGATCA	2 cut(s)	124, 505
Kzo9I	GATC	5 cut(s)	90, 124, 505, 539, 586
LmnI	GCTCC	4 cut(s)	107, 445, 453, 839
Lsp1109I	GCAGC	1 cut(s)	766
LweI	GCATC	2 cut(s)	70, 784
MaeI	CTAG	3 cut(s)	491, 843, 934
MaeII	ACGT	1 cut(s)	929
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	5 cut(s)	92, 126, 507, 541, 588
MboI	GATC	5 cut(s)	90, 124, 505, 539, 586
MboII	GAAGA	3 cut(s)	238, 403, 493
MfeI	CAATTG	1 cut(s)	509
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	5 cut(s)	74, 135, 235, 450, 820
MlsI	TGGCCA	3 cut(s)	60, 194, 709
MluCI	AATT	5 cut(s)	308, 353, 458, 509, 562
MluNI	TGGCCA	3 cut(s)	60, 194, 709
MlyI	GAGTC	2 cut(s)	151, 536
MnlI	CCTC	7 cut(s)	70, 387, 507, 691, 862, 885, 906
Mox20I	TGGCCA	3 cut(s)	60, 194, 709
MscI	TGGCCA	3 cut(s)	60, 194, 709
MseI	TTAA	3 cut(s)	221, 534, 863
Msp20I	TGGCCA	3 cut(s)	60, 194, 709
MspCI	CTTAAG	1 cut(s)	862
MspI	CCGG	3 cut(s)	313, 665, 767
MspR9I	CCNGG	2 cut(s)	452, 687
MunI	CAATTG	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	452, 687
MwoI	GCNNNNNNNGC	1 cut(s)	776
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	5 cut(s)	90, 124, 505, 539, 586
NheI	GCTAGC	1 cut(s)	842
NlaIII	CATG	3 cut(s)	114, 199, 250
NspI	RCATGY	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	895
PflMI	CCANNNNNTGG	1 cut(s)	385
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	781
PleI	GAGTC	2 cut(s)	150, 535
PpsI	GAGTC	2 cut(s)	150, 535
PshBI	ATTAAT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	450, 685
PspGI	CCWGG	2 cut(s)	450, 685
PspPI	GGNCC	2 cut(s)	689, 740
PsuI	RGATCY	1 cut(s)	90
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	221, 534, 863
SatI	GCNGC	1 cut(s)	780
Sau3AI	GATC	5 cut(s)	90, 124, 505, 539, 586
Sau96I	GGNCC	2 cut(s)	689, 740
SchI	GAGTC	2 cut(s)	151, 536
ScrFI	CCNGG	2 cut(s)	452, 687
SduI	GDGCHC	5 cut(s)	74, 135, 235, 450, 820
SfaNI	GCATC	2 cut(s)	70, 784
SinI	GGWCC	1 cut(s)	740
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
Sse9I	AATT	5 cut(s)	308, 353, 458, 509, 562
SseBI	AGGCCT	1 cut(s)	895
SsiI	CCGC	1 cut(s)	543
SspMI	CTAG	3 cut(s)	491, 843, 934
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	1 cut(s)	895
StyD4I	CCNGG	2 cut(s)	450, 685
StyI	CCWWGG	2 cut(s)	94, 195
TaaI	ACNGT	1 cut(s)	914
TaiI	ACGT	1 cut(s)	932
TasI	AATT	5 cut(s)	308, 353, 458, 509, 562
Tru1I	TTAA	3 cut(s)	221, 534, 863
Tru9I	TTAA	3 cut(s)	221, 534, 863
TscAI	CASTG	1 cut(s)	352
TseI	GCWGC	1 cut(s)	779
TspDTI	ATGAA	5 cut(s)	164, 192, 239, 305, 510
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	385
Vha464I	CTTAAG	1 cut(s)	862
VneI	GTGCAC	2 cut(s)	70, 231
VpaK11BI	GGWCC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XspI	CTAG	3 cut(s)	491, 843, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.