Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

70988067 .. 70992032

Gene Structure 3966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAGATGCAATGCGTGTTGGCGTGAACTGGAAGGCCGGGCCATCTCAACTACCTGTGGCCACCTTCTCTGCACAGAGGATGCTAACAAGATCCTTAGCAATGATGGAGCTTGTCCCATTTGTGATCAAGTGCTCTCTAAGAGTCATATGAAAGTTGTGGATGTCAATCCAAATGATGAATGGATAAATATGGCCATGACCGGAGTGTCTCCAGATATATTAATGAAGAGTGCACACAGAAGTGTCATGTTCTATATTGGGCAAAAGGAATTGATAATGCAGCGCAAGTTGAGCATGGTAGCAGGTCAATACCGGCAGAAATGTGAAGCAATGCAAGAAAAGTTCATGGAGCAATTGCAAAAGATGCAGTCTCAGTGCCAGAAATATGCCAAGAAGTGCGAAATGTTGGAGCAAGAAAATGAGAGCTTGTCCAAGGATAAGCAGGAGCTCCAGGAAAAATATTCAGAGAAATCCAGACAGAAGAGAAAGTTGGATGAAATGTATGATCAATTGAGGAGTGAGTACGAATCAGTTAAACGAAATGCCATCCAACCTGCAACAAATTTCTATTCCAGAAATGAACCTGATCTTTTCTCAAACCAGGCTAACATTATGGATCGCAGAGAGGCCGTTAGAAAAGATTGGCGGGTTCTTACTCCTGAAACTCCAGGGCCAAAAGAGGATATATGGCCAGCAAGACAGAATAGTTCAAACTCGGGTGGTCCTTTTGATGTCTCTATCTCACCGGCAAAACAAGCTGCTATGCCAGTCGATGCTGTGAACAGAAGGCCTGGTGCTAACCCAATGTTTGGATCTGCAGCTAGCAACCCCTCAACGACTTTAAGGAACATTTTATTCTCCCCAATAAAGAGGCCTCAGCTCTCCCGTCGTCCTCAGATGTTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

302

Amino Acids

34.62

Weight (kDa)

8.98

Isoelectric Point (pI)

66.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	2 - 43	9.3e-07	zinc-RING finger domain
zf-C3HC4_3	PF13920	2 - 46	8.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	205
Acc36I	ACCTGC	2 cut(s)	293, 562
AccB7I	CCANNNNNTGG	1 cut(s)	809
AciI	CCGC	1 cut(s)	646
AclWI	GGATC	3 cut(s)	85, 624, 820
AcoI	YGGCCR	3 cut(s)	58, 192, 689
AcsI	RAATTY	1 cut(s)	562
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	809
AgsI	TTSAA	1 cut(s)	711
AjnI	CCWGG	4 cut(s)	450, 600, 667, 790
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	6 cut(s)	110, 426, 448, 758, 821, 880
AluI	AGCT	6 cut(s)	110, 426, 448, 758, 821, 880
Alw21I	GWGCWC	3 cut(s)	135, 235, 450
Alw26I	GTCTC	3 cut(s)	213, 375, 739
Alw44I	GTGCAC	1 cut(s)	231
AlwI	GGATC	3 cut(s)	85, 624, 820
Ama87I	CYCGRG	1 cut(s)	715
AoxI	GGCC	9 cut(s)	34, 39, 58, 192, 627, 671, 689, 788, 872
ApaLI	GTGCAC	1 cut(s)	231
ApeKI	GCWGC	3 cut(s)	280, 758, 818
ApoI	RAATTY	1 cut(s)	562
AseI	ATTAAT	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	3 cut(s)	39, 671, 722
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	735
AsuNHI	GCTAGC	1 cut(s)	821
AvaI	CYCGRG	1 cut(s)	715
AvaII	GGWCC	1 cut(s)	722
BaeGI	GKGCMC	1 cut(s)	235
BalI	TGGCCA	3 cut(s)	60, 194, 691
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	3 cut(s)	135, 235, 450
BbvCI	CCTCAGC	1 cut(s)	876
BbvI	GCAGC	3 cut(s)	292, 745, 830
BccI	CCATC	3 cut(s)	50, 98, 554
BceAI	ACGGC	1 cut(s)	614
BciT130I	CCWGG	4 cut(s)	452, 602, 669, 792
BclI	TGATCA	2 cut(s)	124, 505
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	3 cut(s)	213, 375, 739
BfaI	CTAG	1 cut(s)	822
BfmI	CTRYAG	1 cut(s)	816
BfuAI	ACCTGC	2 cut(s)	293, 562
BisI	GCNGC	3 cut(s)	281, 759, 819
BlsI	GCNGC	3 cut(s)	282, 760, 820
Bme1390I	CCNGG	5 cut(s)	38, 452, 602, 669, 792
Bme18I	GGWCC	1 cut(s)	722
BmeT110I	CYCGRG	1 cut(s)	715
BmgT120I	GGNCC	3 cut(s)	39, 671, 722
BmrFI	CCNGG	5 cut(s)	38, 452, 602, 669, 792
BmsI	GCATC	3 cut(s)	70, 354, 763
BmtI	GCTAGC	1 cut(s)	825
BpmI	CTGGAG	3 cut(s)	195, 434, 651
Bpu10I	CCTNAGC	2 cut(s)	95, 876
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	906
BsaBI	GATNNNNATC	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	432, 668
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse118I	RCCGGY	2 cut(s)	312, 745
Bse1I	ACTGG	2 cut(s)	33, 767
Bse3DI	GCAATG	3 cut(s)	16, 106, 336
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	4 cut(s)	452, 602, 669, 792
BseDI	CCNNGG	2 cut(s)	432, 668
BseGI	GGATG	4 cut(s)	85, 166, 499, 546
BseJI	GATNNNNATC	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMI	GCAATG	3 cut(s)	16, 106, 336
BseMII	CTCAG	3 cut(s)	386, 890, 908
BseNI	ACTGG	2 cut(s)	33, 767
BseRI	GAGGAG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	3 cut(s)	292, 745, 830
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	9 cut(s)	36, 41, 60, 194, 629, 673, 691, 790, 874
BsiHKAI	GWGCWC	3 cut(s)	135, 235, 450
BsiHKCI	CYCGRG	1 cut(s)	715
BsiSI	CCGG	4 cut(s)	37, 201, 313, 746
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmAI	GTCTC	3 cut(s)	213, 375, 739
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	9 cut(s)	36, 41, 60, 194, 629, 673, 691, 790, 874
BsoBI	CYCGRG	1 cut(s)	715
Bsp1286I	GDGCHC	3 cut(s)	135, 235, 450
Bsp143I	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
BspACI	CCGC	1 cut(s)	646
BspANI	GGCC	9 cut(s)	36, 41, 60, 194, 629, 673, 691, 790, 874
BspCNI	CTCAG	3 cut(s)	385, 889, 907
BspMAI	CTGCAG	1 cut(s)	820
BspMI	ACCTGC	2 cut(s)	293, 562
BspOI	GCTAGC	1 cut(s)	825
BspPI	GGATC	3 cut(s)	85, 624, 820
BsrDI	GCAATG	3 cut(s)	16, 106, 336
BsrFI	RCCGGY	2 cut(s)	312, 745
BsrI	ACTGG	2 cut(s)	33, 767
BssAI	RCCGGY	2 cut(s)	312, 745
BssECI	CCNNGG	2 cut(s)	432, 668
BssMI	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	4 cut(s)	452, 602, 669, 792
Bst6I	CTCTTC	2 cut(s)	221, 476
BstAPI	GCANNNNNTGC	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	906
BstC8I	GCNNGC	2 cut(s)	693, 823
BstDEI	CTNAG	5 cut(s)	95, 138, 372, 876, 894
BstF5I	GGATG	4 cut(s)	85, 166, 499, 546
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	6 cut(s)	93, 127, 508, 589, 619, 815
BstMAI	GTCTC	3 cut(s)	213, 375, 739
BstMBI	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
BstMWI	GCNNNNNNNGC	3 cut(s)	291, 364, 755
BstNI	CCWGG	4 cut(s)	452, 602, 669, 792
BstSCI	CCNGG	5 cut(s)	36, 450, 600, 667, 790
BstSFI	CTRYAG	1 cut(s)	816
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	3 cut(s)	292, 745, 830
BstX2I	RGATCY	2 cut(s)	90, 812
BstYI	RGATCY	2 cut(s)	90, 812
BsuRI	GGCC	9 cut(s)	36, 41, 60, 194, 629, 673, 691, 790, 874
BtsCI	GGATG	4 cut(s)	85, 166, 499, 546
BtsIMutI	CAGTG	1 cut(s)	380
BveI	ACCTGC	2 cut(s)	293, 562
Cac8I	GCNNGC	2 cut(s)	693, 823
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	2 cut(s)	312, 745
Cfr13I	GGNCC	3 cut(s)	39, 671, 722
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	4 cut(s)	196, 247, 295, 346
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	5 cut(s)	95, 138, 372, 876, 894
DpnI	GATC	6 cut(s)	92, 126, 507, 588, 618, 814
DpnII	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
DrdI	GACNNNNNNGTC	1 cut(s)	205
DseDI	GACNNNNNNGTC	1 cut(s)	205
EaeI	YGGCCR	3 cut(s)	58, 192, 689
Eam1104I	CTCTTC	2 cut(s)	221, 476
EarI	CTCTTC	2 cut(s)	221, 476
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	2 cut(s)	790, 874
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	722
Eco53kI	GAGCTC	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	715
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	4 cut(s)	450, 600, 667, 790
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	199, 250, 298, 349
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	4 cut(s)	195, 246, 294, 345
FauI	CCCGC	1 cut(s)	639
FauNDI	CATATG	1 cut(s)	147
FbaI	TGATCA	2 cut(s)	124, 505
Fnu4HI	GCNGC	3 cut(s)	281, 759, 819
FokI	GGATG	4 cut(s)	92, 173, 506, 533
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	3 cut(s)	281, 759, 819
FspBI	CTAG	1 cut(s)	822
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	281, 759, 819
GsuI	CTGGAG	3 cut(s)	195, 434, 651
HaeIII	GGCC	9 cut(s)	36, 41, 60, 194, 629, 673, 691, 790, 874
HapII	CCGG	4 cut(s)	37, 201, 313, 746
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	4 cut(s)	199, 250, 298, 349
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	142, 527
HpaII	CCGG	4 cut(s)	37, 201, 313, 746
HphI	GGTGA	1 cut(s)	735
Hpy166II	GTNNAC	4 cut(s)	26, 233, 781, 903
Hpy188I	TCNGA	2 cut(s)	466, 897
Hpy188III	TCNNGA	4 cut(s)	212, 474, 573, 659
Hpy8I	GTNNAC	4 cut(s)	26, 233, 781, 903
Hpy99I	CGWCG	1 cut(s)	891
HpyAV	CCTTC	3 cut(s)	26, 74, 780
HpyCH4IV	ACGT	1 cut(s)	905
HpyCH4V	TGCA	9 cut(s)	9, 72, 233, 280, 334, 358, 367, 557, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	291, 364, 755
HpyF3I	CTNAG	5 cut(s)	95, 138, 372, 876, 894
HpySE526I	ACGT	1 cut(s)	905
Hsp92II	CATG	4 cut(s)	199, 250, 298, 349
HspAI	GCGC	1 cut(s)	283
Ksp22I	TGATCA	2 cut(s)	124, 505
Kzo9I	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
LmnI	GCTCC	5 cut(s)	107, 349, 409, 445, 453
Lsp1109I	GCAGC	3 cut(s)	292, 745, 830
LweI	GCATC	3 cut(s)	70, 354, 763
MaeI	CTAG	1 cut(s)	822
MaeII	ACGT	1 cut(s)	905
MalI	GATC	6 cut(s)	92, 126, 507, 588, 618, 814
MboI	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
MboII	GAAGA	2 cut(s)	238, 493
MfeI	CAATTG	2 cut(s)	353, 509
MflI	RGATCY	2 cut(s)	90, 812
MhlI	GDGCHC	3 cut(s)	135, 235, 450
MlsI	TGGCCA	3 cut(s)	60, 194, 691
MluCI	AATT	4 cut(s)	269, 353, 509, 562
MluNI	TGGCCA	3 cut(s)	60, 194, 691
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	3 cut(s)	387, 471, 574
MnlI	CCTC	8 cut(s)	70, 507, 619, 673, 841, 864, 885, 903
Mox20I	TGGCCA	3 cut(s)	60, 194, 691
MscI	TGGCCA	3 cut(s)	60, 194, 691
MseI	TTAA	3 cut(s)	221, 534, 842
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	3 cut(s)	60, 194, 691
MspI	CCGG	4 cut(s)	37, 201, 313, 746
MspR9I	CCNGG	5 cut(s)	38, 452, 602, 669, 792
MunI	CAATTG	2 cut(s)	353, 509
MvaI	CCWGG	4 cut(s)	452, 602, 669, 792
MwoI	GCNNNNNNNGC	3 cut(s)	291, 364, 755
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	147
NdeII	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
NheI	GCTAGC	1 cut(s)	821
NlaIII	CATG	4 cut(s)	199, 250, 298, 349
OliI	CACNNNNGTG	1 cut(s)	240
PceI	AGGCCT	2 cut(s)	790, 874
PfeI	GAWTC	1 cut(s)	527
PflMI	CCANNNNNTGG	1 cut(s)	809
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	282, 760, 820
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Ppu21I	YACGTR	1 cut(s)	906
PshBI	ATTAAT	1 cut(s)	221
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	4 cut(s)	450, 600, 667, 790
PspGI	CCWGG	4 cut(s)	450, 600, 667, 790
PspPI	GGNCC	3 cut(s)	39, 671, 722
PstI	CTGCAG	1 cut(s)	820
PsuI	RGATCY	2 cut(s)	90, 812
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	240
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	221, 534, 842
SatI	GCNGC	3 cut(s)	281, 759, 819
Sau3AI	GATC	6 cut(s)	90, 124, 505, 586, 616, 812
Sau96I	GGNCC	3 cut(s)	39, 671, 722
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	5 cut(s)	38, 452, 602, 669, 792
SduI	GDGCHC	3 cut(s)	135, 235, 450
SfaNI	GCATC	3 cut(s)	70, 354, 763
SfcI	CTRYAG	1 cut(s)	816
SinI	GGWCC	1 cut(s)	722
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	4 cut(s)	269, 353, 509, 562
SseBI	AGGCCT	2 cut(s)	790, 874
SsiI	CCGC	1 cut(s)	646
SspI	AATATT	1 cut(s)	461
SspMI	CTAG	1 cut(s)	822
SstI	GAGCTC	1 cut(s)	450
StuI	AGGCCT	2 cut(s)	790, 874
StyD4I	CCNGG	5 cut(s)	36, 450, 600, 667, 790
StyI	CCWWGG	1 cut(s)	432
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	1 cut(s)	771
TasI	AATT	4 cut(s)	269, 353, 509, 562
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	221, 534, 842
Tru9I	TTAA	3 cut(s)	221, 534, 842
TscAI	CASTG	1 cut(s)	380
TseI	GCWGC	3 cut(s)	280, 758, 818
TspDTI	ATGAA	6 cut(s)	164, 192, 239, 334, 510, 594
TspRI	CASTG	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	809
VneI	GTGCAC	1 cut(s)	231
VpaK11BI	GGWCC	1 cut(s)	722
VspI	ATTAAT	1 cut(s)	221
XapI	RAATTY	1 cut(s)	562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XspI	CTAG	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.