Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Forward (+)

38528304 .. 38530454

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1269900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGAGATGCAATGCATGTTGGCGAGAACTGGAAGGGCGAGCTGTTTCCACCACCTGTGGCCACCTTTTGTGTATCCTACGGAGAGGAAAATTTTGCGTTAACATTCGTGATGCGGGCAAGATCCTTGGCAGTGATGGAGCGTGTCCCGTTTGTGATCAAGTGCTCTCTAAGAGCTTCTGTATCCTTTTGATAATGATCGGAAGATATTCTGTTTCAGATGGCCATGATTGGAGTGTCTCCACAGATATTGCACACAAAAGTGTCATGTTCTACATTGGCCAAAGGGAATTGGAAATGCAGTGCAAGATGAACAGAATGCAAGCTCAGTATCGGCAGAAATTTGAAGCAATGCAAGAAAAGTTTGGTGAGAAAATGGAACAGTTGCATGCTGCATACCAGAAAATGGCAAAGAGGTGCCAAACAATGGCGCAAGAAATTGAGAGCTTGTCCAAGGATAAGCAGGAGCTGCAGGAGAAGTTTTCAGAGAAATCCAGACAGAAGAGAAAATTAGATGAAATGTATGATCAATTGAGGAGTGAGTACGATTCAGTTAAACGATCTGCCATCCAACCGTCGACGAATTTCTTTTCAAGAAATGAACCTGATATTTTCTCAAACCAAGCTAACATTATGATGGAAAACAGAGAAGCTGTTAGAAGAGATTGGTCCGTTCTTACTCCTGAAACTCCAGGGCCGAAGGAGGATATATGGCCAGCGAGACAGAATAGTTCAAACTCCGGCGGTCCTTTTGACATCTCGCTTGGCTCACCGGCAAAACAAGCTGCTATTCCAGTTGATGCTGGGAACAGAAGGGCTGGTGCTCACCCTATGTTTGGAACCGGAGCTAGCAACCCCGCAATGACTTTACGGAACATGATACTCTCCCCAATAAAGAGGCCTCAGCTCTCCCGCCGTCCCCAGATGTTCACGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

312

Amino Acids

35.44

Weight (kDa)

9.22

Isoelectric Point (pI)

62.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	414
AccB7I	CCANNNNNTGG	2 cut(s)	403, 424
AccI	GTMKAC	1 cut(s)	575
AciI	CCGC	4 cut(s)	113, 741, 855, 910
AclWI	GGATC	1 cut(s)	115
AcoI	YGGCCR	4 cut(s)	58, 220, 277, 710
AcsI	RAATTY	3 cut(s)	89, 338, 580
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	403, 424, 833
AgsI	TTSAA	3 cut(s)	344, 591, 732
AjnI	CCWGG	1 cut(s)	688
AleI	CACNNNNGTG	1 cut(s)	258
Alw21I	GWGCWC	2 cut(s)	165, 823
Alw26I	GTCTC	2 cut(s)	241, 712
AlwI	GGATC	1 cut(s)	115
AlwNI	CAGNNNCTG	1 cut(s)	466
AoxI	GGCC	6 cut(s)	58, 220, 277, 692, 710, 896
ApeKI	GCWGC	3 cut(s)	389, 466, 782
ApoI	RAATTY	3 cut(s)	89, 338, 580
Asp700I	GAANNNNTTC	1 cut(s)	205
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	3 cut(s)	666, 692, 743
AsuHPI	GGTGA	3 cut(s)	377, 759, 815
AsuNHI	GCTAGC	1 cut(s)	845
AvaII	GGWCC	2 cut(s)	666, 743
BalI	TGGCCA	4 cut(s)	60, 222, 279, 712
BanI	GGYRCC	1 cut(s)	414
Bbv12I	GWGCWC	2 cut(s)	165, 823
BbvCI	CCTCAGC	1 cut(s)	900
BbvI	GCAGC	3 cut(s)	376, 453, 769
BccI	CCATC	4 cut(s)	128, 212, 572, 628
BceAI	ACGGC	1 cut(s)	897
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	2 cut(s)	83, 191
BclI	TGATCA	2 cut(s)	154, 523
BcoDI	GTCTC	2 cut(s)	241, 712
BfaI	CTAG	2 cut(s)	846, 934
BfmI	CTRYAG	1 cut(s)	467
BfuI	GTATCC	2 cut(s)	83, 191
BisI	GCNGC	3 cut(s)	390, 467, 783
BlsI	GCNGC	3 cut(s)	391, 468, 784
Bme1390I	CCNGG	1 cut(s)	690
Bme18I	GGWCC	2 cut(s)	666, 743
BmgT120I	GGNCC	3 cut(s)	666, 692, 743
BmiI	GGNNCC	2 cut(s)	416, 838
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	2 cut(s)	100, 787
BmtI	GCTAGC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	672
Bpu10I	CCTNAGC	1 cut(s)	900
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	3 cut(s)	124, 450, 689
BsaWI	WCCGGW	1 cut(s)	839
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 424, 833
Bse118I	RCCGGY	1 cut(s)	769
Bse1I	ACTGG	2 cut(s)	33, 791
Bse3DI	GCAATG	3 cut(s)	16, 354, 864
Bse8I	GATNNNNATC	1 cut(s)	194
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	3 cut(s)	124, 450, 689
BseGI	GGATG	1 cut(s)	564
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	403, 424, 833
BseMI	GCAATG	3 cut(s)	16, 354, 864
BseMII	CTCAG	2 cut(s)	338, 914
BseNI	ACTGG	2 cut(s)	33, 791
BseRI	GAGGAG	1 cut(s)	547
BseXI	GCAGC	3 cut(s)	376, 453, 769
BseYI	CCCAGC	1 cut(s)	800
BshFI	GGCC	6 cut(s)	60, 222, 279, 694, 712, 898
BshNI	GGYRCC	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	165, 823
BsiSI	CCGG	3 cut(s)	738, 770, 840
BslFI	GGGAC	2 cut(s)	129, 900
BslI	CCNNNNNNNGG	3 cut(s)	403, 424, 833
BsmAI	GTCTC	2 cut(s)	241, 712
BsmFI	GGGAC	2 cut(s)	129, 900
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	6 cut(s)	60, 222, 279, 694, 712, 898
Bsp1286I	GDGCHC	2 cut(s)	165, 823
Bsp143I	GATC	5 cut(s)	120, 154, 195, 523, 557
BspACI	CCGC	4 cut(s)	113, 741, 855, 910
BspANI	GGCC	6 cut(s)	60, 222, 279, 694, 712, 898
BspCNI	CTCAG	2 cut(s)	337, 913
BspLI	GGNNCC	2 cut(s)	416, 838
BspMAI	CTGCAG	1 cut(s)	471
BspOI	GCTAGC	1 cut(s)	849
BspPI	GGATC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	414
BsrDI	GCAATG	3 cut(s)	16, 354, 864
BsrFI	RCCGGY	1 cut(s)	769
BsrI	ACTGG	2 cut(s)	33, 791
BssAI	RCCGGY	1 cut(s)	769
BssECI	CCNNGG	3 cut(s)	124, 450, 689
BssMI	GATC	5 cut(s)	120, 154, 195, 523, 557
BssT1I	CCWWGG	2 cut(s)	124, 450
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	2 cut(s)	381, 573
Bst6I	CTCTTC	2 cut(s)	494, 652
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstC8I	GCNNGC	6 cut(s)	39, 115, 321, 387, 714, 847
BstDEI	CTNAG	3 cut(s)	168, 324, 900
BstF5I	GGATG	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	5 cut(s)	123, 157, 198, 526, 560
BstMAI	GTCTC	2 cut(s)	241, 712
BstMBI	GATC	5 cut(s)	120, 154, 195, 523, 557
BstMWI	GCNNNNNNNGC	2 cut(s)	466, 779
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	2 cut(s)	18, 389
BstSCI	CCNGG	1 cut(s)	688
BstSFI	CTRYAG	1 cut(s)	467
BstV1I	GCAGC	3 cut(s)	376, 453, 769
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	83, 191
BsuRI	GGCC	6 cut(s)	60, 222, 279, 694, 712, 898
BtsCI	GGATG	1 cut(s)	564
BtsI	GCAGTG	2 cut(s)	136, 305
BtsIMutI	CAGTG	2 cut(s)	136, 305
Cac8I	GCNNGC	6 cut(s)	39, 115, 321, 387, 714, 847
CaiI	CAGNNNCTG	1 cut(s)	466
CfoI	GCGC	1 cut(s)	430
Cfr10I	RCCGGY	1 cut(s)	769
Cfr13I	GGNCC	3 cut(s)	666, 692, 743
Csp6I	GTAC	1 cut(s)	541
CspCI	CAANNNNNGTGG	2 cut(s)	229, 264
CviAII	CATG	5 cut(s)	15, 224, 265, 386, 874
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	3 cut(s)	168, 324, 900
DpnI	GATC	5 cut(s)	122, 156, 197, 525, 559
DpnII	GATC	5 cut(s)	120, 154, 195, 523, 557
EaeI	YGGCCR	4 cut(s)	58, 220, 277, 710
Eam1104I	CTCTTC	2 cut(s)	494, 652
EarI	CTCTTC	2 cut(s)	494, 652
Eco130I	CCWWGG	2 cut(s)	124, 450
Eco147I	AGGCCT	1 cut(s)	898
Eco47I	GGWCC	2 cut(s)	666, 743
EcoRII	CCWGG	1 cut(s)	688
EcoT14I	CCWWGG	2 cut(s)	124, 450
EcoT22I	ATGCAT	1 cut(s)	16
ErhI	CCWWGG	2 cut(s)	124, 450
FaeI	CATG	5 cut(s)	18, 227, 268, 389, 877
FaqI	GGGAC	2 cut(s)	129, 900
FatI	CATG	5 cut(s)	14, 223, 264, 385, 873
FauI	CCCGC	3 cut(s)	106, 862, 917
FbaI	TGATCA	2 cut(s)	154, 523
FblI	GTMKAC	1 cut(s)	575
Fnu4HI	GCNGC	3 cut(s)	390, 467, 783
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	3 cut(s)	390, 467, 783
FspBI	CTAG	2 cut(s)	846, 934
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	3 cut(s)	390, 467, 783
GsaI	CCCAGC	1 cut(s)	804
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	6 cut(s)	60, 222, 279, 694, 712, 898
HapII	CCGG	3 cut(s)	738, 770, 840
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	5 cut(s)	18, 227, 268, 389, 877
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	2 cut(s)	100, 576
HindII	GTYRAC	2 cut(s)	100, 576
HinfI	GANTC	1 cut(s)	545
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	3 cut(s)	738, 770, 840
HphI	GGTGA	3 cut(s)	377, 759, 815
Hpy166II	GTNNAC	3 cut(s)	100, 576, 927
Hpy188I	TCNGA	3 cut(s)	200, 217, 484
Hpy188III	TCNNGA	4 cut(s)	107, 492, 591, 680
Hpy8I	GTNNAC	3 cut(s)	100, 576, 927
Hpy99I	CGWCG	2 cut(s)	577, 580
HpyAV	CCTTC	3 cut(s)	26, 691, 804
HpyCH4III	ACNGT	2 cut(s)	381, 573
HpyCH4IV	ACGT	1 cut(s)	929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	466, 779
HpyF3I	CTNAG	3 cut(s)	168, 324, 900
HpySE526I	ACGT	1 cut(s)	929
Hsp92II	CATG	5 cut(s)	18, 227, 268, 389, 877
HspAI	GCGC	1 cut(s)	428
Ksp22I	TGATCA	2 cut(s)	154, 523
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	120, 154, 195, 523, 557
LmnI	GCTCC	3 cut(s)	137, 463, 842
Lsp1109I	GCAGC	3 cut(s)	376, 453, 769
LweI	GCATC	2 cut(s)	100, 787
MaeI	CTAG	2 cut(s)	846, 934
MaeII	ACGT	1 cut(s)	929
MalI	GATC	5 cut(s)	122, 156, 197, 525, 559
MboI	GATC	5 cut(s)	120, 154, 195, 523, 557
MboII	GAAGA	3 cut(s)	213, 511, 669
MfeI	CAATTG	1 cut(s)	527
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	2 cut(s)	165, 823
MlsI	TGGCCA	4 cut(s)	60, 222, 279, 712
MluCI	AATT	7 cut(s)	89, 287, 338, 435, 506, 527, 580
MluNI	TGGCCA	4 cut(s)	60, 222, 279, 712
MmeI	TCCRAC	1 cut(s)	592
MnlI	CCTC	6 cut(s)	77, 405, 525, 694, 888, 909
Mox20I	TGGCCA	4 cut(s)	60, 222, 279, 712
Mph1103I	ATGCAT	1 cut(s)	16
MroXI	GAANNNNTTC	1 cut(s)	205
MscI	TGGCCA	4 cut(s)	60, 222, 279, 712
MseI	TTAA	2 cut(s)	99, 552
MslI	CAYNNNNRTG	2 cut(s)	258, 632
Msp20I	TGGCCA	4 cut(s)	60, 222, 279, 712
MspI	CCGG	3 cut(s)	738, 770, 840
MspR9I	CCNGG	1 cut(s)	690
MunI	CAATTG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	466, 779
NdeII	GATC	5 cut(s)	120, 154, 195, 523, 557
NheI	GCTAGC	1 cut(s)	845
NlaIII	CATG	5 cut(s)	18, 227, 268, 389, 877
NlaIV	GGNNCC	2 cut(s)	416, 838
NsiI	ATGCAT	1 cut(s)	16
NspI	RCATGY	2 cut(s)	18, 389
OliI	CACNNNNGTG	1 cut(s)	258
PaeI	GCATGC	1 cut(s)	389
PceI	AGGCCT	1 cut(s)	898
PctI	GAATGC	1 cut(s)	321
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	545
PflMI	CCANNNNNTGG	2 cut(s)	403, 424
PkrI	GCNGC	3 cut(s)	391, 468, 784
Psp6I	CCWGG	1 cut(s)	688
PspFI	CCCAGC	1 cut(s)	800
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	416, 838
PspPI	GGNCC	3 cut(s)	666, 692, 743
PstI	CTGCAG	1 cut(s)	471
PstNI	CAGNNNCTG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	258, 632
SalI	GTCGAC	1 cut(s)	574
SaqAI	TTAA	2 cut(s)	99, 552
SatI	GCNGC	3 cut(s)	390, 467, 783
Sau3AI	GATC	5 cut(s)	120, 154, 195, 523, 557
Sau96I	GGNCC	3 cut(s)	666, 692, 743
ScrFI	CCNGG	1 cut(s)	690
SduI	GDGCHC	2 cut(s)	165, 823
SfaNI	GCATC	2 cut(s)	100, 787
SfcI	CTRYAG	1 cut(s)	467
SgrDI	CGTCGACG	1 cut(s)	574
SinI	GGWCC	2 cut(s)	666, 743
SmiMI	CAYNNNNRTG	2 cut(s)	258, 632
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	7 cut(s)	89, 287, 338, 435, 506, 527, 580
SseBI	AGGCCT	1 cut(s)	898
SsiI	CCGC	4 cut(s)	113, 741, 855, 910
SspMI	CTAG	2 cut(s)	846, 934
StuI	AGGCCT	1 cut(s)	898
StyD4I	CCNGG	1 cut(s)	688
StyI	CCWWGG	2 cut(s)	124, 450
TaaI	ACNGT	2 cut(s)	381, 573
TaiI	ACGT	1 cut(s)	932
TaqI	TCGA	1 cut(s)	575
TasI	AATT	7 cut(s)	89, 287, 338, 435, 506, 527, 580
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	2 cut(s)	99, 552
Tru9I	TTAA	2 cut(s)	99, 552
TscAI	CASTG	2 cut(s)	136, 305
TseI	GCWGC	3 cut(s)	389, 466, 782
TspDTI	ATGAA	3 cut(s)	323, 528, 612
TspGWI	ACGGA	3 cut(s)	94, 658, 883
TspRI	CASTG	2 cut(s)	136, 305
Van91I	CCANNNNNTGG	2 cut(s)	403, 424
VpaK11BI	GGWCC	2 cut(s)	666, 743
XapI	RAATTY	3 cut(s)	89, 338, 580
XceI	RCATGY	2 cut(s)	18, 389
XmiI	GTMKAC	1 cut(s)	575
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	2 cut(s)	846, 934
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.