Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004064

Physical Location & Seq

Genomic Coordinates Reverse (-)

24092988 .. 24093949

Gene Structure 962 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033175

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGCAGCGCAAGTTGAGCATGGTAGCAGGTCAATACCGGCAGAAATGTGAAGCAATGCAAGAAAAGTTCATGGAGCAATTGCAAAAGATGCAGTCTCAGTGCCAGAAATATGCCAAGAAGTGTGAAATATTGGAGCAAGAAAATGAGAGCTTGTCCAAGGATAAGCAGGAGCTCCAGGAAAAATATTCAGAGAAATCCAGACAGAAGAGAAAGTTGGATGAAATGTATGATCAATTGAGGAGTGAGTACGAATCAGTTAAACGAAATGCCATCCAACCTGCAACAAATTTCTATTCCAGAAATGAACCTGATCTTTTCTCAAACCAGGCTAACATTATGGATCGCAGAGAGGCTGTTAGAAAAGCTCAAGTACTTCCAAAACCAGTTGACTTATTTCTTGCAGATTGGCGGGTCCTTACTCCTGAAACTCCAGGGCCAAAAGAGGATATATGGCCAGCAAGACAGAATAGTTCAAACTCGGGTGGTCCTTTTGATGTCTCTATCTCACCGGCAAAACAAGCTGCTATGCCAGTCGATGCTGTGAACAGAAGGCCTGGTGCTAACCCAATGTTTGGATCTGGAGCTAGCAACCCGTCAACGACTTTAAGGAACATGTTATTCTCCCCAATAAAGAGGCCTCAGCTCTCCCGTCGTCCTCAGATGTTCACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005712 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051026 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_5

Protein Analysis

224

Amino Acids

25.76

Weight (kDa)

9.55

Isoelectric Point (pI)

70.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53490 AT1G53490
fragaria_vesca	FvH4_3g17740 FvH4_3g17740 FvH4_3g17740
malus_domestica	MD03G1247600.v1.1 MD11G1269900.v1.1
prunus_persica	Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1 Prupe.4G156500_v2.0.a1
pyrus_communis	pycom03g19630 pycom03g19720 pycom11g23840
rosa_chinensis	RchiOBHm_Chr5g0029521
rosa_laevigata	RLG00000033175
rosa_multiflora	Rmu_sc0004181.1_g000010
rosa_roxburghii	Rroxscaffold_1G00050450
rosa_rugosa	Rorug05G0114400 Rorug05G0114500 Rorug05G0114600
rosa_samantha	Rh5AG206600 Rh5BG205300 Rh5CG227300 Rh5DG208900
rosa_wichuraiana	Rw5G018790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	17, 286
AccB7I	CCANNNNNTGG	1 cut(s)	572
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	2 cut(s)	348, 583
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	286
AfaI	GTAC	2 cut(s)	248, 372
AfiI	CCNNNNNNNGG	1 cut(s)	572
AflIII	ACRYGT	1 cut(s)	612
AgsI	TTSAA	1 cut(s)	474
AjnI	CCWGG	4 cut(s)	174, 324, 430, 553
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	6 cut(s)	150, 172, 365, 521, 584, 643
AluI	AGCT	6 cut(s)	150, 172, 365, 521, 584, 643
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	99, 502
AlwI	GGATC	2 cut(s)	348, 583
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	4 cut(s)	434, 452, 551, 635
ApeKI	GCWGC	2 cut(s)	4, 521
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	412, 434, 485
AsuHPI	GGTGA	1 cut(s)	498
AsuNHI	GCTAGC	1 cut(s)	584
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	412, 485
BalI	TGGCCA	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	16, 508
BccI	CCATC	1 cut(s)	278
BciT130I	CCWGG	4 cut(s)	176, 326, 432, 555
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	99, 502
BfaI	CTAG	1 cut(s)	585
BfuAI	ACCTGC	2 cut(s)	17, 286
BisI	GCNGC	2 cut(s)	5, 522
BlsI	GCNGC	2 cut(s)	6, 523
BmcAI	AGTACT	1 cut(s)	372
Bme1390I	CCNGG	4 cut(s)	176, 326, 432, 555
Bme18I	GGWCC	2 cut(s)	412, 485
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	3 cut(s)	412, 434, 485
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	4 cut(s)	176, 326, 432, 555
BmsI	GCATC	2 cut(s)	78, 526
BmtI	GCTAGC	1 cut(s)	588
BpmI	CTGGAG	3 cut(s)	158, 414, 600
Bpu10I	CCTNAGC	1 cut(s)	639
BpuEI	CTTGAG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	156, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse118I	RCCGGY	2 cut(s)	36, 508
Bse1I	ACTGG	2 cut(s)	383, 530
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	4 cut(s)	176, 326, 432, 555
BseDI	CCNNGG	2 cut(s)	156, 431
BseGI	GGATG	2 cut(s)	223, 270
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	3 cut(s)	110, 653, 671
BseNI	ACTGG	2 cut(s)	383, 530
BseRI	GAGGAG	1 cut(s)	253
BseXI	GCAGC	2 cut(s)	16, 508
BshFI	GGCC	4 cut(s)	436, 454, 553, 637
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	2 cut(s)	37, 509
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	2 cut(s)	99, 502
BsnI	GGCC	4 cut(s)	436, 454, 553, 637
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	4 cut(s)	229, 310, 340, 575
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	4 cut(s)	436, 454, 553, 637
BspCNI	CTCAG	3 cut(s)	109, 652, 670
BspLI	GGNNCC	1 cut(s)	413
BspMI	ACCTGC	2 cut(s)	17, 286
BspOI	GCTAGC	1 cut(s)	588
BspPI	GGATC	2 cut(s)	348, 583
BsrDI	GCAATG	1 cut(s)	60
BsrFI	RCCGGY	2 cut(s)	36, 508
BsrI	ACTGG	2 cut(s)	383, 530
BssAI	RCCGGY	2 cut(s)	36, 508
BssECI	CCNNGG	2 cut(s)	156, 431
BssMI	GATC	4 cut(s)	229, 310, 340, 575
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	4 cut(s)	176, 326, 432, 555
Bst6I	CTCTTC	1 cut(s)	200
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstBAI	YACGTR	1 cut(s)	669
BstC8I	GCNNGC	2 cut(s)	456, 586
BstDEI	CTNAG	3 cut(s)	96, 639, 657
BstF5I	GGATG	2 cut(s)	223, 270
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	4 cut(s)	232, 313, 343, 578
BstMAI	GTCTC	2 cut(s)	99, 502
BstMBI	GATC	4 cut(s)	229, 310, 340, 575
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 88, 518
BstNI	CCWGG	4 cut(s)	176, 326, 432, 555
BstNSI	RCATGY	1 cut(s)	616
BstSCI	CCNGG	4 cut(s)	174, 324, 430, 553
BstV1I	GCAGC	2 cut(s)	16, 508
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	4 cut(s)	436, 454, 553, 637
BtsCI	GGATG	2 cut(s)	223, 270
BtsIMutI	CAGTG	1 cut(s)	104
BveI	ACCTGC	2 cut(s)	17, 286
Cac8I	GCNNGC	2 cut(s)	456, 586
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	36, 508
Cfr13I	GGNCC	3 cut(s)	412, 434, 485
Csp6I	GTAC	2 cut(s)	247, 371
CviAII	CATG	3 cut(s)	19, 70, 613
CviQI	GTAC	2 cut(s)	247, 371
DdeI	CTNAG	3 cut(s)	96, 639, 657
DpnI	GATC	4 cut(s)	231, 312, 342, 577
DpnII	GATC	4 cut(s)	229, 310, 340, 575
EaeI	YGGCCR	1 cut(s)	452
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	2 cut(s)	553, 637
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	2 cut(s)	412, 485
Eco53kI	GAGCTC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	172
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	4 cut(s)	174, 324, 430, 553
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	22, 73, 616
FaiI	YATR	9 cut(s)	20, 71, 111, 228, 338, 449, 451, 527, 614
FatI	CATG	3 cut(s)	18, 69, 612
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	5, 522
FokI	GGATG	2 cut(s)	230, 257
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	5, 522
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	5, 522
GsuI	CTGGAG	3 cut(s)	158, 414, 600
HaeIII	GGCC	4 cut(s)	436, 454, 553, 637
HapII	CCGG	2 cut(s)	37, 509
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	22, 73, 616
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	2 cut(s)	388, 597
HindII	GTYRAC	2 cut(s)	388, 597
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	2 cut(s)	37, 509
HphI	GGTGA	1 cut(s)	498
Hpy166II	GTNNAC	4 cut(s)	388, 544, 597, 666
Hpy188I	TCNGA	2 cut(s)	190, 660
Hpy188III	TCNNGA	4 cut(s)	198, 297, 422, 579
Hpy8I	GTNNAC	4 cut(s)	388, 544, 597, 666
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	1 cut(s)	543
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	6 cut(s)	4, 58, 82, 91, 281, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 88, 518
HpyF3I	CTNAG	3 cut(s)	96, 639, 657
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	3 cut(s)	22, 73, 616
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	229, 310, 340, 575
LmnI	GCTCC	5 cut(s)	73, 133, 169, 177, 581
Lsp1109I	GCAGC	2 cut(s)	16, 508
LweI	GCATC	2 cut(s)	78, 526
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	668
MalI	GATC	4 cut(s)	231, 312, 342, 577
MboI	GATC	4 cut(s)	229, 310, 340, 575
MboII	GAAGA	1 cut(s)	217
MfeI	CAATTG	2 cut(s)	77, 233
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	454
MluCI	AATT	3 cut(s)	77, 233, 286
MluNI	TGGCCA	1 cut(s)	454
MmeI	TCCRAC	2 cut(s)	195, 298
MnlI	CCTC	6 cut(s)	231, 343, 436, 627, 648, 666
Mox20I	TGGCCA	1 cut(s)	454
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	2 cut(s)	258, 605
Msp20I	TGGCCA	1 cut(s)	454
MspI	CCGG	2 cut(s)	37, 509
MspR9I	CCNGG	4 cut(s)	176, 326, 432, 555
MunI	CAATTG	2 cut(s)	77, 233
MvaI	CCWGG	4 cut(s)	176, 326, 432, 555
MwoI	GCNNNNNNNGC	3 cut(s)	15, 88, 518
NdeII	GATC	4 cut(s)	229, 310, 340, 575
NheI	GCTAGC	1 cut(s)	584
NlaIII	CATG	3 cut(s)	22, 73, 616
NlaIV	GGNNCC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	616
PceI	AGGCCT	2 cut(s)	553, 637
PciI	ACATGT	1 cut(s)	612
PfeI	GAWTC	1 cut(s)	251
PflMI	CCANNNNNTGG	1 cut(s)	572
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	6, 523
Ppu21I	YACGTR	1 cut(s)	669
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	174
Psp5II	RGGWCCY	1 cut(s)	412
Psp6I	CCWGG	4 cut(s)	174, 324, 430, 553
PspGI	CCWGG	4 cut(s)	174, 324, 430, 553
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	3 cut(s)	412, 434, 485
PspPPI	RGGWCCY	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	2 cut(s)	248, 372
RsaNI	GTAC	2 cut(s)	247, 371
SacI	GAGCTC	1 cut(s)	174
SaqAI	TTAA	2 cut(s)	258, 605
SatI	GCNGC	2 cut(s)	5, 522
Sau3AI	GATC	4 cut(s)	229, 310, 340, 575
Sau96I	GGNCC	3 cut(s)	412, 434, 485
ScaI	AGTACT	1 cut(s)	372
ScrFI	CCNGG	4 cut(s)	176, 326, 432, 555
SduI	GDGCHC	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	78, 526
SinI	GGWCC	2 cut(s)	412, 485
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	3 cut(s)	77, 233, 286
SseBI	AGGCCT	2 cut(s)	553, 637
SsiI	CCGC	1 cut(s)	409
SspI	AATATT	2 cut(s)	129, 185
SspMI	CTAG	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	174
StuI	AGGCCT	2 cut(s)	553, 637
StyD4I	CCNGG	4 cut(s)	174, 324, 430, 553
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	1 cut(s)	534
TasI	AATT	3 cut(s)	77, 233, 286
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	258, 605
Tru9I	TTAA	2 cut(s)	258, 605
TscAI	CASTG	1 cut(s)	104
TseI	GCWGC	2 cut(s)	4, 521
TspDTI	ATGAA	3 cut(s)	58, 234, 318
TspRI	CASTG	1 cut(s)	104
Van91I	CCANNNNNTGG	1 cut(s)	572
VpaK11BI	GGWCC	2 cut(s)	412, 485
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	616
XspI	CTAG	1 cut(s)	585
ZrmI	AGTACT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.