AT1G53720

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
20056526 .. 20059803
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53720.1

Sequence Viewer

Length: 1521 bp
ATGTCAGTTCTTATTGTGACGAGCCTTGGTGATATAGTAATTGACCTTCACTCGGATAAATGCCCTTTGACTTGCAAGAACTTCCTTAAGCTTTGCAAGATCAAGTACTACAATGGGTGTCTTTTTCACACTGTGCAAAAGGATTTCACAGCACAGACTGGTGATCCAACTGGTACGGGAGCTGGTGGAGATTCAATCTACAAATTTCTGTACGGTGAGCAGGCTCGTTTTTACAAAGATGAGATTCATCTTGATTTAAAACATTCAAAGACCGGCACTGTTGCAATGGCCAGTGGTGGAGAGAATCTCAATGCTTCCCAGTTCTATTTCACACTTCGTGATGATTTGGACTATCTTGATGGGAAACACACTGTGTTTGGACAGATTGCTGAGGGGTTTGACACTTTGACTAGGATAAATGAAGCTTATGTTGATCCGAAGAACAGACCCTATAAGAACATTAGAATCAAGCACACACATATACTTGATGATCCATTTGATGATCCCCCACAGCTGGCTGAAATGATGCCAGATGCTTCCCCTGAAGGAAAACCGAAAGAAGAGGTCAAAGATGACGTGCGGCTTGAAGATGATTGGGTTCCAATGGATGAAGAACTTGGTGCTCAGGAACTGGAGGAGGTTATCCGCGAAAAGGCAGCCCATTCAAGTGCTGTTGTACTTGAAAGTATAGGAGATATCCCCGAGGCTGAGGTAAAACCTCCTGACAATGTGCTGTTCGTCTGCAAACTGAATCCAGTGACTGAGGATGAAGACCTCCATACCATTTTTTCACGCTTTGGAACCGTTGTATCGGCTGATGTAATCCGGGATTTCAAGACAGGTGACAGTTTGTGCTATGCTTTTATAGAGTTTGAGAACAAGGAGTCATGCGAACAAGCGTACTTTAAGATGGACAATGCTCTGATCGATGATAGACGGATACATGTGGATTTCAGTCAGAGTGTGTCCAAACTTTGGTCACAGTTCAGGCAAAAAGACTCCCAAAAGGGCAAAGGGAATGGGTGTTTCAAATGCGGCTCGACGGATCATATTGCCAAGGACTGTGTGGGTGGTCCGTCTTCAAAGTTTATTGTAAAAGATCAAAACAGACAGCACGGAGGAGGTGAAGGCTATGAGATGGTGTTTGAGGGTGATGTGCATGAAACCCCCAAGCATAATAGTCATGAGAGGGAGAGGAGTGAGAAGATTCAGAGGAGAAGTCCTCATGGTAATGGGGAAGGCAAAAGACAGCACAGAGATGAACGTGATGATGGTAGAAGACAGCATGATCGGGAAGACGCACGAGAACTGGAGAGGAAACACAGAGAGAGAAAAGAAAGAGAGAGTAGGGAAGATGAAGACAGAAGAAGAAGAAGACGCCGTGAAGAGTCTAGAGATAAAGAGAGTCGGAGAGAGAGAGACGAAGATGATCATCGGAGTCATAGAGATTATAAAGAGAGGAGAAGAGAGAGAGACGATAGACATGGAAGAGAAGCTAGACATGAGAGAAGGGATAGATGA

Protein Analysis

506

Amino Acids

58.83

Weight (kDa)

5.85

Isoelectric Point (pI)

50.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 4 - 160 1.2e-44 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
RRM_1 PF00076 245 - 315 1.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1452
AccB7I CCANNNNNTGG 1 cut(s) 975
AccII CGCG 1 cut(s) 648
AciI CCGC 3 cut(s) 580, 646, 1035
AclWI GGATC 5 cut(s) 158, 428, 485, 497, 1053
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 1378
AdeI CACNNNGTG 3 cut(s) 133, 338, 373
AfaI GTAC 5 cut(s) 107, 175, 212, 678, 902
AfiI CCNNNNNNNGG 4 cut(s) 52, 514, 652, 975
AflII CTTAAG 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 8 cut(s) 195, 267, 587, 666, 683, 835, 1030, 1083
AjiI CACGTC 1 cut(s) 577
AluBI AGCT 5 cut(s) 91, 182, 425, 514, 1496
AluI AGCT 5 cut(s) 91, 182, 425, 514, 1496
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 2 cut(s) 1413, 1467
AlwI GGATC 5 cut(s) 158, 428, 485, 497, 1053
AlwNI CAGNNNCTG 2 cut(s) 631, 761
Ama87I CYCGRG 1 cut(s) 701
AoxI GGCC 1 cut(s) 288
ApeKI GCWGC 1 cut(s) 656
ApoI RAATTY 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 1073
AsuC2I CCSGG 1 cut(s) 827
AsuHPI GGTGA 6 cut(s) 41, 173, 227, 854, 1136, 1163
AvaI CYCGRG 1 cut(s) 701
AvaII GGWCC 1 cut(s) 1073
BaeI ACNNNNGTAYC 2 cut(s) 792, 825
BalI TGGCCA 1 cut(s) 290
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BauI CACGAG 1 cut(s) 1302
BbsI GAAGAC 6 cut(s) 777, 1071, 1285, 1302, 1365, 1381
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 2 cut(s) 390, 708
BbvI GCAGC 1 cut(s) 668
BccI CCATC 4 cut(s) 353, 904, 1132, 1265
BceAI ACGGC 1 cut(s) 1365
BciVI GTATCC 1 cut(s) 933
BclI TGATCA 1 cut(s) 1429
BcnI CCSGG 1 cut(s) 827
BcoDI GTCTC 2 cut(s) 1413, 1467
BfaI CTAG 3 cut(s) 411, 1392, 1497
BfrI CTTAAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 933
BisI GCNGC 3 cut(s) 581, 657, 1036
BlsI GCNGC 3 cut(s) 582, 658, 1037
BmcAI AGTACT 1 cut(s) 107
Bme1390I CCNGG 1 cut(s) 827
Bme18I GGWCC 1 cut(s) 1073
BmeT110I CYCGRG 1 cut(s) 701
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 1073
BmiI GGNNCC 2 cut(s) 600, 802
BmrFI CCNGG 1 cut(s) 827
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 2 cut(s) 516, 523
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 6 cut(s) 777, 1071, 1285, 1302, 1365, 1381
BplI GAGNNNNNCTC 4 cut(s) 291, 323, 1207, 1239
BpmI CTGGAG 2 cut(s) 653, 1331
Bpu10I CCTNAGC 3 cut(s) 390, 624, 708
BpuMI CCSGG 1 cut(s) 827
Bsa29I ATCGAT 1 cut(s) 927
BsaBI GATNNNNATC 1 cut(s) 1431
BsaHI GRCGYC 1 cut(s) 1378
BsaJI CCNNGG 3 cut(s) 25, 702, 1056
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 514, 652, 975
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 7 cut(s) 163, 175, 291, 319, 636, 755, 1314
Bse3DI GCAATG 1 cut(s) 291
Bse8I GATNNNNATC 1 cut(s) 1431
BseCI ATCGAT 1 cut(s) 927
BseDI CCNNGG 3 cut(s) 25, 702, 1056
BseGI GGATG 2 cut(s) 613, 772
BseJI GATNNNNATC 1 cut(s) 1431
BseLI CCNNNNNNNGG 4 cut(s) 52, 514, 652, 975
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 4 cut(s) 381, 638, 699, 753
BseNI ACTGG 7 cut(s) 163, 175, 291, 319, 636, 755, 1314
BseRI GAGGAG 5 cut(s) 650, 1134, 1210, 1228, 1474
BseXI GCAGC 1 cut(s) 668
Bsh1236I CGCG 1 cut(s) 648
BshFI GGCC 1 cut(s) 290
BshVI ATCGAT 1 cut(s) 927
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 701
BsiSI CCGG 2 cut(s) 273, 826
BslI CCNNNNNNNGG 4 cut(s) 52, 514, 652, 975
BsmAI GTCTC 2 cut(s) 1413, 1467
BsmBI CGTCTC 2 cut(s) 1413, 1467
BsnI GGCC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 625
BspACI CCGC 3 cut(s) 580, 646, 1035
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 4 cut(s) 382, 637, 700, 754
BspDI ATCGAT 1 cut(s) 927
BspFNI CGCG 1 cut(s) 648
BspHI TCATGA 1 cut(s) 1183
BspLI GGNNCC 2 cut(s) 600, 802
BspPI GGATC 5 cut(s) 158, 428, 485, 497, 1053
BspTI CTTAAG 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 7 cut(s) 163, 175, 291, 319, 636, 755, 1314
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 3 cut(s) 25, 702, 1056
BssNI GRCGYC 1 cut(s) 1378
BssSI CACGAG 1 cut(s) 1302
BssT1I CCWWGG 2 cut(s) 25, 1056
Bst2BI CACGAG 1 cut(s) 1302
Bst4CI ACNGT 8 cut(s) 133, 215, 280, 373, 805, 848, 984, 1064
Bst6I CTCTTC 4 cut(s) 555, 1380, 1459, 1483
BstACI GRCGYC 1 cut(s) 1378
BstAFI CTTAAG 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 222, 516
BstDEI CTNAG 4 cut(s) 390, 624, 708, 762
BstF5I GGATG 2 cut(s) 613, 772
BstFNI CGCG 1 cut(s) 648
BstMAI GTCTC 2 cut(s) 1413, 1467
BstNSI RCATGY 1 cut(s) 947
BstSCI CCNGG 1 cut(s) 825
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 1 cut(s) 668
BstV2I GAAGAC 6 cut(s) 777, 1071, 1285, 1302, 1365, 1381
Bsu15I ATCGAT 1 cut(s) 927
BsuI GTATCC 1 cut(s) 933
BsuRI GGCC 1 cut(s) 290
BsuTUI ATCGAT 1 cut(s) 927
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 2 cut(s) 613, 772
BtsIMutI CAGTG 5 cut(s) 129, 276, 298, 369, 762
Cac8I GCNNGC 2 cut(s) 222, 516
CaiI CAGNNNCTG 2 cut(s) 631, 761
CciI TCATGA 1 cut(s) 1183
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 1073
ClaI ATCGAT 1 cut(s) 927
CseI GACGC 2 cut(s) 1307, 1386
Csp6I GTAC 5 cut(s) 106, 174, 211, 677, 901
CviAII CATG 8 cut(s) 888, 944, 1160, 1184, 1226, 1286, 1484, 1502
CviQI GTAC 5 cut(s) 106, 174, 211, 677, 901
DdeI CTNAG 4 cut(s) 390, 624, 708, 762
DraI TTTAAA 1 cut(s) 258
DraIII CACNNNGTG 3 cut(s) 133, 338, 373
EaeI YGGCCR 1 cut(s) 288
Eam1104I CTCTTC 4 cut(s) 555, 1380, 1459, 1483
EarI CTCTTC 4 cut(s) 555, 1380, 1459, 1483
Eco130I CCWWGG 2 cut(s) 25, 1056
Eco32I GATATC 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 1073
Eco57I CTGAAG 1 cut(s) 564
Eco88I CYCGRG 1 cut(s) 701
EcoRV GATATC 1 cut(s) 697
EcoT14I CCWWGG 2 cut(s) 25, 1056
ErhI CCWWGG 2 cut(s) 25, 1056
Esp3I CGTCTC 2 cut(s) 1413, 1467
FaeI CATG 8 cut(s) 891, 947, 1163, 1187, 1229, 1289, 1487, 1505
FatI CATG 8 cut(s) 887, 943, 1159, 1183, 1225, 1285, 1483, 1501
FbaI TGATCA 1 cut(s) 1429
Fnu4HI GCNGC 3 cut(s) 581, 657, 1036
FokI GGATG 2 cut(s) 620, 779
Fsp4HI GCNGC 3 cut(s) 581, 657, 1036
FspBI CTAG 3 cut(s) 411, 1392, 1497
GluI GCNGC 3 cut(s) 581, 657, 1036
GsuI CTGGAG 2 cut(s) 653, 1331
HaeIII GGCC 1 cut(s) 290
HapII CCGG 2 cut(s) 273, 826
HgaI GACGC 2 cut(s) 1307, 1386
Hin1I GRCGYC 1 cut(s) 1378
Hin1II CATG 8 cut(s) 891, 947, 1163, 1187, 1229, 1289, 1487, 1505
HindIII AAGCTT 2 cut(s) 89, 423
HpaII CCGG 2 cut(s) 273, 826
HphI GGTGA 6 cut(s) 41, 173, 227, 854, 1136, 1163
Hpy188I TCNGA 7 cut(s) 55, 438, 924, 960, 1212, 1410, 1437
Hpy188III TCNNGA 9 cut(s) 251, 338, 356, 626, 722, 835, 1184, 1292, 1392
Hpy99I CGWCG 1 cut(s) 1045
HpyAV CCTTC 5 cut(s) 56, 539, 1121, 1232, 1503
HpyCH4III ACNGT 8 cut(s) 133, 215, 280, 373, 805, 848, 984, 1064
HpyCH4IV ACGT 2 cut(s) 576, 1264
HpyCH4V TGCA 6 cut(s) 75, 96, 136, 284, 744, 1159
HpyF3I CTNAG 4 cut(s) 390, 624, 708, 762
HpySE526I ACGT 2 cut(s) 576, 1264
Hsp92I GRCGYC 1 cut(s) 1378
Hsp92II CATG 8 cut(s) 891, 947, 1163, 1187, 1229, 1289, 1487, 1505
Ksp22I TGATCA 1 cut(s) 1429
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 668
LweI GCATC 2 cut(s) 516, 523
MaeI CTAG 3 cut(s) 411, 1392, 1497
MaeII ACGT 2 cut(s) 576, 1264
MaeIII GTNAC 4 cut(s) 16, 757, 842, 978
MhlI GDGCHC 1 cut(s) 625
MlsI TGGCCA 1 cut(s) 290
MluCI AATT 2 cut(s) 39, 203
MluNI TGGCCA 1 cut(s) 290
MlyI GAGTC 5 cut(s) 893, 992, 1397, 1414, 1447
MmeI TCCRAC 2 cut(s) 191, 1388
Mox20I TGGCCA 1 cut(s) 290
MscI TGGCCA 1 cut(s) 290
MseI TTAA 3 cut(s) 87, 257, 906
MslI CAYNNNNRTG 3 cut(s) 666, 1230, 1257
Msp20I TGGCCA 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 514
MspCI CTTAAG 1 cut(s) 86
MspI CCGG 2 cut(s) 273, 826
MspR9I CCNGG 1 cut(s) 827
MvnI CGCG 1 cut(s) 648
NciI CCSGG 1 cut(s) 827
NlaIII CATG 8 cut(s) 891, 947, 1163, 1187, 1229, 1289, 1487, 1505
NlaIV GGNNCC 2 cut(s) 600, 802
NmuCI GTSAC 4 cut(s) 16, 757, 842, 978
NspI RCATGY 1 cut(s) 947
PagI TCATGA 1 cut(s) 1183
PciI ACATGT 1 cut(s) 943
PfeI GAWTC 6 cut(s) 191, 244, 304, 465, 751, 1207
PflMI CCANNNNNTGG 1 cut(s) 975
PfoI TCCNGGA 1 cut(s) 825
PkrI GCNGC 3 cut(s) 582, 658, 1037
PleI GAGTC 5 cut(s) 892, 992, 1396, 1413, 1446
PpsI GAGTC 5 cut(s) 892, 992, 1396, 1413, 1446
PscI ACATGT 1 cut(s) 943
PsiI TTATAA 1 cut(s) 1452
PspN4I GGNNCC 2 cut(s) 600, 802
PspPI GGNCC 1 cut(s) 1073
PstNI CAGNNNCTG 2 cut(s) 631, 761
PvuII CAGCTG 1 cut(s) 514
RsaI GTAC 5 cut(s) 107, 175, 212, 678, 902
RsaNI GTAC 5 cut(s) 106, 174, 211, 677, 901
RseI CAYNNNNRTG 3 cut(s) 666, 1230, 1257
SaqAI TTAA 3 cut(s) 87, 257, 906
SatI GCNGC 3 cut(s) 581, 657, 1036
Sau96I GGNCC 1 cut(s) 1073
ScaI AGTACT 1 cut(s) 107
SchI GAGTC 5 cut(s) 893, 992, 1397, 1414, 1447
ScrFI CCNGG 1 cut(s) 827
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 2 cut(s) 516, 523
SinI GGWCC 1 cut(s) 1073
SmiMI CAYNNNNRTG 3 cut(s) 666, 1230, 1257
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 2 cut(s) 39, 203
SsiI CCGC 3 cut(s) 580, 646, 1035
SspMI CTAG 3 cut(s) 411, 1392, 1497
StyD4I CCNGG 1 cut(s) 825
StyI CCWWGG 2 cut(s) 25, 1056
TaaI ACNGT 8 cut(s) 133, 215, 280, 373, 805, 848, 984, 1064
TaiI ACGT 2 cut(s) 579, 1267
TaqI TCGA 2 cut(s) 927, 1040
TasI AATT 2 cut(s) 39, 203
TatI WGTACW 2 cut(s) 105, 676
TauI GCSGC 2 cut(s) 583, 1038
TfiI GAWTC 6 cut(s) 191, 244, 304, 465, 751, 1207
Tru1I TTAA 3 cut(s) 87, 257, 906
Tru9I TTAA 3 cut(s) 87, 257, 906
TscAI CASTG 5 cut(s) 136, 283, 298, 376, 762
TseFI GTSAC 4 cut(s) 16, 757, 842, 978
TseI GCWGC 1 cut(s) 656
Tsp45I GTSAC 4 cut(s) 16, 757, 842, 978
TspDTI ATGAA 7 cut(s) 236, 435, 624, 783, 1176, 1275, 1371
TspGWI ACGGA 4 cut(s) 952, 1058, 1065, 1131
TspRI CASTG 5 cut(s) 136, 283, 298, 376, 762
Van91I CCANNNNNTGG 1 cut(s) 975
Vha464I CTTAAG 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 1073
XapI RAATTY 1 cut(s) 203
XbaI TCTAGA 1 cut(s) 1391
XceI RCATGY 1 cut(s) 947
XcmI CCANNNNNNNNNTGG 1 cut(s) 1063
XspI CTAG 3 cut(s) 411, 1392, 1497
ZrmI AGTACT 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.