Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Reverse (-)

19987158 .. 19991766

Gene Structure 4609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG182100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGACTGTGGCAAAAGTTCATTTTACATTGCGTGATGATCTAGACTATCTCGATGGGAAGTATACAGTTTTTGGGGAGATAGCAGAGGGGTTGGAGACATTGACAAGGATCAATGAGGCTTATGTGGACGAGAGCAACAGACCCTATAAAAATATTAGAATCAAGCATACCTACATATTGGATGATCCTTTTGAAGATCCTTCACAACTATCTGAGTTAATTCCTGGAGCCTCCCCGGAAGGCAAACCAAAGGATGAGATAGGGGATATTCCTGATGTTGAGATAAAGCCGCCTGACAATGTGCTTTTTGTTTGTAAACTGAATCCAGTCACTGAAGATGAGGACTTGTTCACAATTTTCTCACGCTTTGGAACTGTGCAAGCGGCTGACATAATATACGTGATTATAAGACTGGAGACAAATTTGAAACGAAAGAGGCCGGCGTGTGAAAAAGCATATTTCAAGATGGATAATGCTTTGATTGATGACTCAAGAATTCATGTAGATTTTAGTCAGAGTGTTGCATACTGGCGCAAAGAAGCTGGCAAAGGCAAAGGCTGCTTCAAATGTGGTGCACTTGATCTCATTGCCAAGGAGTGCAATGGTGATAATGCCAGTAAACAGCAACCTCAAAAGTACGTATTGAAGAATGATAATGCACAGCGCGGTGGAGGCAACACAACTCTAGGTATGTCGTTCTTTGTGTGTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

237

Amino Acids

26.68

Weight (kDa)

5.14

Isoelectric Point (pI)

34.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	12 - 57	3.6e-09	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	1 cut(s)	666
AciI	CCGC	3 cut(s)	290, 383, 666
AclWI	GGATC	3 cut(s)	116, 179, 191
AcsI	RAATTY	2 cut(s)	421, 495
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	1 cut(s)	638
AgsI	TTSAA	5 cut(s)	194, 427, 463, 565, 646
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	1 cut(s)	542
AluI	AGCT	1 cut(s)	542
Alw21I	GWGCWC	1 cut(s)	577
Alw26I	GTCTC	2 cut(s)	89, 410
Alw44I	GTGCAC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	116, 179, 191
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	437
ApaLI	GTGCAC	1 cut(s)	573
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	2 cut(s)	421, 495
AspLEI	GCGC	2 cut(s)	534, 666
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	617
BaeGI	GKGCMC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	577
BbvI	GCAGC	1 cut(s)	545
BccI	CCATC	2 cut(s)	47, 460
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	89, 410
BfaI	CTAG	2 cut(s)	41, 686
BisI	GCNGC	3 cut(s)	290, 384, 559
BlsI	GCNGC	3 cut(s)	291, 385, 560
Bme1390I	CCNGG	2 cut(s)	225, 236
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	225, 236
BpmI	CTGGAG	2 cut(s)	246, 434
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	2 cut(s)	400, 640
BsaJI	CCNNGG	2 cut(s)	234, 591
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	4 cut(s)	326, 417, 533, 615
Bse3DI	GCAATG	3 cut(s)	26, 585, 607
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	234, 591
BseGI	GGATG	2 cut(s)	187, 259
BseMI	GCAATG	3 cut(s)	26, 585, 607
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	4 cut(s)	326, 417, 533, 615
BseSI	GKGCMC	1 cut(s)	577
BseXI	GCAGC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	666
BshFI	GGCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	2 cut(s)	236, 440
BsmAI	GTCTC	2 cut(s)	89, 410
BsnI	GGCC	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	5 cut(s)	37, 108, 184, 196, 580
BspACI	CCGC	3 cut(s)	290, 383, 666
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	666
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	3 cut(s)	116, 179, 191
BsrDI	GCAATG	3 cut(s)	26, 585, 607
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	4 cut(s)	326, 417, 533, 615
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	234, 591
BssMI	GATC	5 cut(s)	37, 108, 184, 196, 580
BssNAI	GTATAC	1 cut(s)	63
BssT1I	CCWWGG	1 cut(s)	591
Bst1107I	GTATAC	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	3 cut(s)	7, 67, 376
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstBAI	YACGTR	2 cut(s)	400, 640
BstC8I	GCNNGC	3 cut(s)	381, 441, 544
BstDEI	CTNAG	1 cut(s)	213
BstF5I	GGATG	2 cut(s)	187, 259
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	2 cut(s)	534, 666
BstKTI	GATC	5 cut(s)	40, 111, 187, 199, 583
BstMAI	GTCTC	2 cut(s)	89, 410
BstMBI	GATC	5 cut(s)	37, 108, 184, 196, 580
BstMWI	GCNNNNNNNGC	2 cut(s)	558, 672
BstNI	CCWGG	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	223, 234
BstSLI	GKGCMC	1 cut(s)	577
BstSNI	TACGTA	1 cut(s)	640
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BstZ17I	GTATAC	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	439
BtsCI	GGATG	2 cut(s)	187, 259
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	3 cut(s)	381, 441, 544
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	2 cut(s)	534, 666
Cfr10I	RCCGGY	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	1 cut(s)	500
CviJI	RGCY	7 cut(s)	119, 230, 289, 386, 439, 542, 558
CviKI_1	RGCY	7 cut(s)	119, 230, 289, 386, 439, 542, 558
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	5 cut(s)	39, 110, 186, 198, 582
DpnII	GATC	5 cut(s)	37, 108, 184, 196, 580
Eco105I	TACGTA	1 cut(s)	640
Eco130I	CCWWGG	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	354
EcoRI	GAATTC	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	1 cut(s)	503
FatI	CATG	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	290, 384, 559
FokI	GGATG	2 cut(s)	194, 266
Fsp4HI	GCNGC	3 cut(s)	290, 384, 559
FspBI	CTAG	2 cut(s)	41, 686
GlaI	GCGC	2 cut(s)	533, 665
GluI	GCNGC	3 cut(s)	290, 384, 559
GsuI	CTGGAG	2 cut(s)	246, 434
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	2 cut(s)	236, 440
HhaI	GCGC	2 cut(s)	534, 666
Hin1II	CATG	1 cut(s)	503
Hin6I	GCGC	2 cut(s)	532, 664
HinP1I	GCGC	2 cut(s)	532, 664
HinfI	GANTC	3 cut(s)	159, 322, 488
HpaII	CCGG	2 cut(s)	236, 440
HphI	GGTGA	1 cut(s)	617
Hpy166II	GTNNAC	6 cut(s)	63, 127, 317, 351, 575, 620
Hpy188I	TCNGA	2 cut(s)	214, 516
Hpy188III	TCNNGA	5 cut(s)	41, 50, 272, 463, 492
Hpy8I	GTNNAC	6 cut(s)	63, 127, 317, 351, 575, 620
HpyAV	CCTTC	2 cut(s)	210, 233
HpyCH4III	ACNGT	3 cut(s)	7, 67, 376
HpyCH4IV	ACGT	2 cut(s)	399, 639
HpyCH4V	TGCA	5 cut(s)	379, 524, 575, 600, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	558, 672
HpyF3I	CTNAG	1 cut(s)	213
HpySE526I	ACGT	2 cut(s)	399, 639
Hsp92II	CATG	1 cut(s)	503
HspAI	GCGC	2 cut(s)	532, 664
KroI	GCCGGC	1 cut(s)	439
KroNI	GCCGGC	1 cut(s)	441
Kzo9I	GATC	5 cut(s)	37, 108, 184, 196, 580
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	1 cut(s)	545
MaeI	CTAG	2 cut(s)	41, 686
MaeII	ACGT	2 cut(s)	399, 639
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	5 cut(s)	39, 110, 186, 198, 582
MboI	GATC	5 cut(s)	37, 108, 184, 196, 580
MboII	GAAGA	3 cut(s)	206, 347, 658
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	4 cut(s)	219, 354, 421, 495
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	79, 109, 241, 334, 429, 639, 665
MroNI	GCCGGC	1 cut(s)	439
MseI	TTAA	1 cut(s)	218
MspI	CCGG	2 cut(s)	236, 440
MspR9I	CCNGG	2 cut(s)	225, 236
MvaI	CCWGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	558, 672
NaeI	GCCGGC	1 cut(s)	441
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	5 cut(s)	37, 108, 184, 196, 580
NgoMIV	GCCGGC	1 cut(s)	439
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	328
PdiI	GCCGGC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	159, 322
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	291, 385, 560
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	2 cut(s)	400, 640
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	229
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	3 cut(s)	290, 384, 559
Sau3AI	GATC	5 cut(s)	37, 108, 184, 196, 580
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	225, 236
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	6 cut(s)	173, 402, 544, 631, 642, 691
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
SnaBI	TACGTA	1 cut(s)	640
Sse9I	AATT	4 cut(s)	219, 354, 421, 495
SsiI	CCGC	3 cut(s)	290, 383, 666
SspI	AATATT	1 cut(s)	154
SspMI	CTAG	2 cut(s)	41, 686
StyD4I	CCNGG	2 cut(s)	223, 234
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	3 cut(s)	7, 67, 376
TaiI	ACGT	2 cut(s)	402, 642
TaqI	TCGA	1 cut(s)	51
TasI	AATT	4 cut(s)	219, 354, 421, 495
TauI	GCSGC	2 cut(s)	292, 386
TfiI	GAWTC	2 cut(s)	159, 322
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	558
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	8, 488
TspRI	CASTG	1 cut(s)	337
VneI	GTGCAC	1 cut(s)	573
XapI	RAATTY	2 cut(s)	421, 495
XbaI	TCTAGA	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	2 cut(s)	41, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.