Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Forward (+)

14963677 .. 14964079

Gene Structure 403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGTCAGTGCTTATAGTGACGAGTTTGGGAGATATAGTTGTGGATTTATACACCAACAGGTGCCCTCTTACTACCAAAAACTTCTTAAAGCTCTACAAGATTAAGTATTACAATGGGTGTCTCTTTCACACTGTCCAGAAGGATTTTACTGCACAAACCGGTGACCCAACTGAAACGGGTTCTGGTGGTGACTCAATATACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

69

Amino Acids

7.58

Weight (kDa)

7.75

Isoelectric Point (pI)

7.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	4 - 61	1.8e-17	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	60
AgeI	ACCGGT	1 cut(s)	158
AluBI	AGCT	1 cut(s)	91
AluI	AGCT	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	125
AsiGI	ACCGGT	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	173, 200
BaeGI	GKGCMC	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse118I	RCCGGY	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	60
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	133
BstEII	GGTNACC	1 cut(s)	161
BstMAI	GTCTC	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	12, 129
Cfr10I	RCCGGY	1 cut(s)	158
CspAI	ACCGGT	1 cut(s)	158
CviJI	RGCY	1 cut(s)	91
CviKI_1	RGCY	1 cut(s)	91
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
FaiI	YATR	4 cut(s)	14, 35, 49, 199
HapII	CCGG	1 cut(s)	159
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	173, 200
Hpy188III	TCNNGA	1 cut(s)	136
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	152
LpnPI	CCDG	4 cut(s)	43, 149, 168, 172
MaeIII	GTNAC	3 cut(s)	16, 161, 188
MhlI	GDGCHC	1 cut(s)	65
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	86, 102
MspI	CCGG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	3 cut(s)	16, 161, 188
PinAI	ACCGGT	1 cut(s)	158
PleI	GAGTC	1 cut(s)	185
PpsI	GAGTC	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	86, 102
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	2 cut(s)	62, 93
SgeI	CNNG	7 cut(s)	33, 70, 109, 148, 171, 189, 195
TaaI	ACNGT	1 cut(s)	133
Tru1I	TTAA	2 cut(s)	86, 102
Tru9I	TTAA	2 cut(s)	86, 102
TscAI	CASTG	2 cut(s)	12, 136
TseFI	GTSAC	3 cut(s)	16, 161, 188
Tsp45I	GTSAC	3 cut(s)	16, 161, 188
TspRI	CASTG	2 cut(s)	12, 136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.