Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Reverse (-)

7973770 .. 7974324

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0091100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAATGCTTCAAGTGTGGTCGTCCAGGACATTGGGCCAAAGATTGCCCTAGCCCTTCAGCAGGTGATCAAGACATGTATGGAAGGAAAATGGGAAGGGCATCCTTGGGTTGGAGCAACTATGGGGGAGGAGATAGTTCATCTATGGGGAGAAATGAATGCTTCAAGTGTGGCCGCCCAGGACATTGGGCACGAGATTGCCCTTCCTCCAACTGATCAGGAAATGCATGGAAGTGGTCAAGCGGGAGGGGACGACTCAAACAATGACTACATTGTTTACTCATATGGTGGAAGGAGAAGCACTTACTGGGAAGATGACTGCTTCAAGTGTGGGCGCTCCGGACATTGGCAGCGAGAGTGCCCTTCGTCAAATGGTGGAGGTGGAAACGATAATGGCAGTGATGGAAAGCGCAGAGAAATTGAGACAAAGAAATGTTTCAAGCATTTGAAAAGAAATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

153

Amino Acids

16.82

Weight (kDa)

5.64

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	107 - 122	1.1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	52
Acc36I	ACCTGC	1 cut(s)	52
AccIII	TCCGGA	1 cut(s)	338
AciI	CCGC	2 cut(s)	174, 242
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	61, 110, 345
AflIII	ACRYGT	1 cut(s)	74
AgsI	TTSAA	5 cut(s)	12, 165, 325, 439, 448
AjnI	CCWGG	2 cut(s)	24, 177
Alw26I	GTCTC	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	338
AoxI	GGCC	2 cut(s)	35, 171
ApeKI	GCWGC	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	336, 411
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	76
BaeGI	GKGCMC	2 cut(s)	192, 362
BauI	CACGAG	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	395
BciT130I	CCWGG	2 cut(s)	26, 179
BclI	TGATCA	2 cut(s)	66, 214
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	50
BfoI	RGCGCY	1 cut(s)	337
BfuAI	ACCTGC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	174, 350
BlsI	GCNGC	2 cut(s)	175, 351
Bme1390I	CCNGG	2 cut(s)	26, 179
BmgT120I	GGNCC	1 cut(s)	35
BmrFI	CCNGG	2 cut(s)	26, 179
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	104, 177
BsaWI	WCCGGW	1 cut(s)	338
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 110, 345
Bse1I	ACTGG	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	338
BseBI	CCWGG	2 cut(s)	26, 179
BseDI	CCNNGG	2 cut(s)	104, 177
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	3 cut(s)	61, 110, 345
BseNI	ACTGG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	2 cut(s)	192, 362
BseXI	GCAGC	1 cut(s)	361
BshFI	GGCC	2 cut(s)	37, 173
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	263
BslI	CCNNNNNNNGG	3 cut(s)	61, 110, 345
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	263
BsmI	GAATGC	2 cut(s)	10, 163
BsnI	GGCC	2 cut(s)	37, 173
Bsp1286I	GDGCHC	2 cut(s)	192, 362
Bsp13I	TCCGGA	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	66, 214
BspACI	CCGC	2 cut(s)	174, 242
BspANI	GGCC	2 cut(s)	37, 173
BspEI	TCCGGA	1 cut(s)	338
BspMI	ACCTGC	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	311
BssECI	CCNNGG	2 cut(s)	104, 177
BssMI	GATC	2 cut(s)	66, 214
BssSI	CACGAG	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	191
Bst2UI	CCWGG	2 cut(s)	26, 179
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	2 cut(s)	336, 411
BstKTI	GATC	2 cut(s)	69, 217
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	66, 214
BstNI	CCWGG	2 cut(s)	26, 179
BstNSI	RCATGY	1 cut(s)	78
BstSCI	CCNGG	2 cut(s)	24, 177
BstSLI	GKGCMC	2 cut(s)	192, 362
BstV1I	GCAGC	1 cut(s)	361
BstXI	CCANNNNNNTGG	2 cut(s)	32, 185
BsuRI	GGCC	2 cut(s)	37, 173
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	403
BveI	ACCTGC	1 cut(s)	52
CfoI	GCGC	2 cut(s)	336, 411
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	2 cut(s)	75, 227
CviJI	RGCY	3 cut(s)	37, 53, 173
CviKI_1	RGCY	3 cut(s)	37, 53, 173
DpnI	GATC	2 cut(s)	68, 216
DpnII	GATC	2 cut(s)	66, 214
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	24, 177
EcoT14I	CCWWGG	1 cut(s)	104
EcoT22I	ATGCAT	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	2 cut(s)	78, 230
FaiI	YATR	7 cut(s)	76, 80, 122, 145, 228, 283, 285
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	2 cut(s)	74, 226
FauI	CCCGC	1 cut(s)	235
FauNDI	CATATG	1 cut(s)	283
FbaI	TGATCA	2 cut(s)	66, 214
Fnu4HI	GCNGC	2 cut(s)	174, 350
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	2 cut(s)	174, 350
FspBI	CTAG	1 cut(s)	50
GlaI	GCGC	2 cut(s)	335, 410
GluI	GCNGC	2 cut(s)	174, 350
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	2 cut(s)	37, 173
HapII	CCGG	1 cut(s)	339
HhaI	GCGC	2 cut(s)	336, 411
Hin1II	CATG	2 cut(s)	78, 230
Hin6I	GCGC	2 cut(s)	334, 409
HinP1I	GCGC	2 cut(s)	334, 409
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	70, 218, 339
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	6 cut(s)	65, 77, 89, 212, 285, 372
HpyCH4V	TGCA	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	78, 230
HspAI	GCGC	2 cut(s)	334, 409
Kpn2I	TCCGGA	1 cut(s)	338
Ksp22I	TGATCA	2 cut(s)	66, 214
Kzo9I	GATC	2 cut(s)	66, 214
LmnI	GCTCC	2 cut(s)	113, 341
LpnPI	CCDG	8 cut(s)	11, 38, 47, 164, 191, 203, 292, 352
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	50
MalI	GATC	2 cut(s)	68, 216
MboI	GATC	2 cut(s)	66, 214
MboII	GAAGA	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	192, 362
MluCI	AATT	2 cut(s)	417, 454
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	2 cut(s)	91, 233
MnlI	CCTC	4 cut(s)	121, 216, 239, 371
Mph1103I	ATGCAT	1 cut(s)	228
MroI	TCCGGA	1 cut(s)	338
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	1 cut(s)	460
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	26, 179
Mva1269I	GAATGC	2 cut(s)	10, 163
MvaI	CCWGG	2 cut(s)	26, 179
NdeI	CATATG	1 cut(s)	283
NdeII	GATC	2 cut(s)	66, 214
NlaIII	CATG	2 cut(s)	78, 230
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	1 cut(s)	78
PaqCI	CACCTGC	1 cut(s)	52
PciI	ACATGT	1 cut(s)	74
PctI	GAATGC	2 cut(s)	10, 163
PdmI	GAANNNNTTC	1 cut(s)	434
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	175, 351
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PscI	ACATGT	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	24, 177
PspGI	CCWGG	2 cut(s)	24, 177
PspPI	GGNCC	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	460
SatI	GCNGC	2 cut(s)	174, 350
Sau3AI	GATC	2 cut(s)	66, 214
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	26, 179
SduI	GDGCHC	2 cut(s)	192, 362
SetI	ASST	2 cut(s)	66, 382
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	417, 454
SsiI	CCGC	2 cut(s)	174, 242
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	24, 177
StyI	CCWWGG	1 cut(s)	104
TasI	AATT	2 cut(s)	417, 454
TauI	GCSGC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	460
Tru9I	TTAA	1 cut(s)	460
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	17, 128, 170
TspRI	CASTG	1 cut(s)	403
XagI	CCTNNNNNAGG	1 cut(s)	59
XceI	RCATGY	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.