Rorug05G0091200

Peptidyl-prolyl cis-trans

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
7977648 .. 7978946
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0091200.1

Sequence Viewer

Length: 744 bp
ATGGCCTCGAGTGACAAGAGACCGACTCCGAACCCAGTCCACGGCGGCGACGACTCCACGACTCCGGGGAAGCCGATGACGATGGGGCAGCACGTGCTGGACAAAGGAGCGGAGATGATGCAGTCGCTGAAGCCGGTGAACCAGATGAGCCAGCACGTGTGCACCTTCGCTCTCTACAGCCACGACCCGACACGTCAGATCGAGACCCACCACTACGTCCATCGCCTCAACCAGGACTTCCTCCAGTGTGCCGTCTACGACTCCGACGGCTCCCACGGCCGCCTCATCGGTGTGGAATACATAGTATCTGATCGGATTTTCGAGGCTTTGCCTCTGGAGGAGCAAAAACTATGGCACTCTCATGCTTATGAGATCAAAGCGGGTCTTTGGGTCAACCCCCGGGTCCCCGAGATGGTCGGCAGGCCGGAGCTCGAAAATTTGGCCAAAACTTATGGCAAATTCTGGTGCACATGGCAGGTTGATAGAGGTGATAGGCTTCCACTAGGGGCACCTGCCCTGATGGTGTCATCGCAACCGGTGAACTTAGGACATGTGAAGCCTGAGCTGGTGGCGAGGAGGGATGACAAGTACAACATATCCACAGACGCCATAAGCCAGTCGAGGTTGGAGATCGGGGAGCCGGAGTGGAGCAATCCGCAGGCGGACTATTGGAAGAATCACGGCAAGGGTTTTGCCATCGACATTAAGAGCACTGAGATGAAGACGAGGGCGCCCTTTCCTTAG

Protein Analysis

247

Amino Acids

27.96

Weight (kDa)

6.3

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1264 PF06884 44 - 211 2.2e-68 Protein of unknown function (DUF1264)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 2 cut(s) 466, 520
AccB1I GGYRCC 2 cut(s) 508, 730
AccBSI CCGCTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 255
AciI CCGC 6 cut(s) 45, 110, 280, 380, 656, 662
AcoI YGGCCR 2 cut(s) 277, 441
AcsI RAATTY 2 cut(s) 436, 458
AcuI CTGAAG 1 cut(s) 149
AcvI CACGTG 2 cut(s) 94, 157
AcyI GRCGYC 2 cut(s) 606, 731
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 3 cut(s) 41, 232, 412
AflIII ACRYGT 3 cut(s) 156, 191, 550
AgeI ACCGGT 1 cut(s) 535
AjiI CACGTC 1 cut(s) 194
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 2 cut(s) 430, 565
AluI AGCT 2 cut(s) 430, 565
Alw21I GWGCWC 4 cut(s) 164, 432, 470, 713
Alw26I GTCTC 2 cut(s) 13, 197
Alw44I GTGCAC 2 cut(s) 160, 466
AlwNI CAGNNNCTG 1 cut(s) 127
Ama87I CYCGRG 3 cut(s) 7, 399, 407
AoxI GGCC 4 cut(s) 3, 277, 422, 441
ApaLI GTGCAC 2 cut(s) 160, 466
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 2 cut(s) 436, 458
AsiGI ACCGGT 1 cut(s) 535
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 1 cut(s) 403
AsuC2I CCSGG 3 cut(s) 66, 400, 401
AsuHPI GGTGA 3 cut(s) 148, 500, 550
AvaI CYCGRG 3 cut(s) 7, 399, 407
AvaII GGWCC 1 cut(s) 403
BaeGI GKGCMC 3 cut(s) 164, 470, 511
BalI TGGCCA 1 cut(s) 443
BanI GGYRCC 2 cut(s) 508, 730
BanII GRGCYC 1 cut(s) 432
BbrPI CACGTG 2 cut(s) 94, 157
BbsI GAAGAC 1 cut(s) 728
Bbv12I GWGCWC 4 cut(s) 164, 432, 470, 713
BbvI GCAGC 1 cut(s) 100
BccI CCATC 5 cut(s) 76, 228, 406, 514, 704
BceAI ACGGC 5 cut(s) 58, 236, 283, 292, 697
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 3 cut(s) 66, 400, 401
BcoDI GTCTC 2 cut(s) 13, 197
BfaI CTAG 1 cut(s) 503
BfmI CTRYAG 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 734
BfuAI ACCTGC 2 cut(s) 466, 520
BisI GCNGC 3 cut(s) 46, 89, 280
BlsI GCNGC 3 cut(s) 47, 90, 281
Bme1390I CCNGG 4 cut(s) 66, 233, 400, 401
Bme18I GGWCC 1 cut(s) 403
BmeT110I CYCGRG 3 cut(s) 7, 399, 407
BmgBI CACGTC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 403
BmiI GGNNCC 6 cut(s) 271, 404, 405, 510, 639, 732
BmrFI CCNGG 4 cut(s) 66, 233, 400, 401
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 728
BplI GAGNNNNNCTC 2 cut(s) 10, 42
BpmI CTGGAG 2 cut(s) 227, 356
Bpu10I CCTNAGC 1 cut(s) 561
BpuMI CCSGG 3 cut(s) 66, 400, 401
BsaAI YACGTR 2 cut(s) 94, 157
BsaHI GRCGYC 2 cut(s) 606, 731
BsaI GGTCTC 2 cut(s) 13, 197
BsaJI CCNNGG 5 cut(s) 40, 65, 274, 398, 399
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 232, 412
Bse118I RCCGGY 2 cut(s) 133, 535
Bse1I ACTGG 3 cut(s) 35, 244, 616
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 5 cut(s) 40, 65, 274, 398, 399
BseGI GGATG 1 cut(s) 586
BseLI CCNNNNNNNGG 3 cut(s) 41, 232, 412
BseMII CTCAG 2 cut(s) 552, 705
BseNI ACTGG 3 cut(s) 35, 244, 616
BseRI GAGGAG 2 cut(s) 353, 589
BseSI GKGCMC 3 cut(s) 164, 470, 511
BseX3I CGGCCG 1 cut(s) 277
BseXI GCAGC 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 5, 279, 424, 443
BshNI GGYRCC 2 cut(s) 508, 730
BshTI ACCGGT 1 cut(s) 535
BsiEI CGRYCG 1 cut(s) 280
BsiHKAI GWGCWC 4 cut(s) 164, 432, 470, 713
BsiHKCI CYCGRG 3 cut(s) 7, 399, 407
BsiSI CCGG 6 cut(s) 65, 134, 400, 425, 536, 641
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 3 cut(s) 41, 232, 412
BsmAI GTCTC 2 cut(s) 13, 197
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 4 cut(s) 5, 279, 424, 443
Bso31I GGTCTC 2 cut(s) 13, 197
BsoBI CYCGRG 3 cut(s) 7, 399, 407
Bsp1286I GDGCHC 5 cut(s) 164, 432, 470, 511, 713
Bsp143I GATC 4 cut(s) 198, 310, 372, 630
BspACI CCGC 6 cut(s) 45, 110, 280, 380, 656, 662
BspANI GGCC 4 cut(s) 5, 279, 424, 443
BspCNI CTCAG 2 cut(s) 553, 706
BspLI GGNNCC 6 cut(s) 271, 404, 405, 510, 639, 732
BspMI ACCTGC 2 cut(s) 466, 520
BspT107I GGYRCC 2 cut(s) 508, 730
BspTNI GGTCTC 2 cut(s) 13, 197
BsrBI CCGCTC 1 cut(s) 110
BsrFI RCCGGY 2 cut(s) 133, 535
BsrI ACTGG 3 cut(s) 35, 244, 616
BssAI RCCGGY 2 cut(s) 133, 535
BssECI CCNNGG 5 cut(s) 40, 65, 274, 398, 399
BssMI GATC 4 cut(s) 198, 310, 372, 630
BssNI GRCGYC 2 cut(s) 606, 731
Bst2UI CCWGG 1 cut(s) 233
BstACI GRCGYC 2 cut(s) 606, 731
BstAPI GCANNNNNTGC 1 cut(s) 94
BstBAI YACGTR 2 cut(s) 94, 157
BstC8I GCNNGC 3 cut(s) 152, 422, 660
BstDEI CTNAG 4 cut(s) 544, 561, 714, 741
BstDSI CCRYGG 2 cut(s) 40, 274
BstENI CCTNNNNNAGG 1 cut(s) 230
BstF5I GGATG 1 cut(s) 586
BstH2I RGCGCY 1 cut(s) 734
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 4 cut(s) 201, 313, 375, 633
BstMAI GTCTC 2 cut(s) 13, 197
BstMBI GATC 4 cut(s) 198, 310, 372, 630
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 2 cut(s) 94, 276
BstNI CCWGG 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 4 cut(s) 64, 231, 398, 399
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 3 cut(s) 164, 470, 511
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 728
BstZI CGGCCG 1 cut(s) 277
BsuRI GGCC 4 cut(s) 5, 279, 424, 443
BtgI CCRYGG 2 cut(s) 40, 274
BtgZI GCGATG 2 cut(s) 206, 513
BtrI CACGTC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 586
BtsIMutI CAGTG 2 cut(s) 251, 711
BveI ACCTGC 2 cut(s) 466, 520
Cac8I GCNNGC 3 cut(s) 152, 422, 660
CaiI CAGNNNCTG 1 cut(s) 127
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 2 cut(s) 133, 535
Cfr13I GGNCC 1 cut(s) 403
Cfr9I CCCGGG 1 cut(s) 399
CseI GACGC 1 cut(s) 614
Csp6I GTAC 1 cut(s) 589
CspAI ACCGGT 1 cut(s) 535
CviAII CATG 3 cut(s) 362, 471, 551
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 4 cut(s) 544, 561, 714, 741
DinI GGCGCC 1 cut(s) 732
DpnI GATC 4 cut(s) 200, 312, 374, 632
DpnII GATC 4 cut(s) 198, 310, 372, 630
EaeI YGGCCR 2 cut(s) 277, 441
EagI CGGCCG 1 cut(s) 277
EciI GGCGGA 1 cut(s) 677
Ecl136II GAGCTC 1 cut(s) 430
EclXI CGGCCG 1 cut(s) 277
Eco24I GRGCYC 1 cut(s) 432
Eco31I GGTCTC 2 cut(s) 13, 197
Eco47I GGWCC 1 cut(s) 403
Eco52I CGGCCG 1 cut(s) 277
Eco53kI GAGCTC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 149
Eco72I CACGTG 2 cut(s) 94, 157
Eco88I CYCGRG 3 cut(s) 7, 399, 407
EcoICRI GAGCTC 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 432
EgeI GGCGCC 1 cut(s) 732
EheI GGCGCC 1 cut(s) 732
FaeI CATG 3 cut(s) 365, 474, 554
FaiI YATR 9 cut(s) 302, 352, 363, 369, 453, 472, 552, 596, 611
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 1 cut(s) 389
FatI CATG 3 cut(s) 361, 470, 550
FauI CCCGC 1 cut(s) 373
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 3 cut(s) 46, 89, 280
FokI GGATG 1 cut(s) 593
FriOI GRGCYC 1 cut(s) 432
Fsp4HI GCNGC 3 cut(s) 46, 89, 280
FspBI CTAG 1 cut(s) 503
GlaI GCGC 1 cut(s) 732
GluI GCNGC 3 cut(s) 46, 89, 280
GsuI CTGGAG 2 cut(s) 227, 356
HaeII RGCGCY 1 cut(s) 734
HaeIII GGCC 4 cut(s) 5, 279, 424, 443
HapII CCGG 6 cut(s) 65, 134, 400, 425, 536, 641
HgaI GACGC 1 cut(s) 614
HhaI GCGC 1 cut(s) 733
Hin1I GRCGYC 2 cut(s) 606, 731
Hin1II CATG 3 cut(s) 365, 474, 554
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 5 cut(s) 25, 53, 61, 260, 676
HpaII CCGG 6 cut(s) 65, 134, 400, 425, 536, 641
HphI GGTGA 3 cut(s) 148, 500, 550
Hpy166II GTNNAC 7 cut(s) 40, 139, 162, 256, 394, 468, 541
Hpy188I TCNGA 5 cut(s) 30, 198, 265, 310, 315
Hpy188III TCNNGA 2 cut(s) 202, 335
Hpy8I GTNNAC 7 cut(s) 40, 139, 162, 256, 394, 468, 541
Hpy99I CGWCG 2 cut(s) 53, 269
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 4 cut(s) 93, 156, 193, 216
HpyCH4V TGCA 3 cut(s) 121, 162, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 276
HpyF3I CTNAG 4 cut(s) 544, 561, 714, 741
HpySE526I ACGT 4 cut(s) 93, 156, 193, 216
Hsp92I GRCGYC 2 cut(s) 606, 731
Hsp92II CATG 3 cut(s) 365, 474, 554
HspAI GCGC 1 cut(s) 731
KasI GGCGCC 1 cut(s) 730
KflI GGGWCCC 1 cut(s) 403
Kzo9I GATC 4 cut(s) 198, 310, 372, 630
LmnI GCTCC 6 cut(s) 107, 275, 340, 427, 637, 648
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 503
MaeII ACGT 4 cut(s) 93, 156, 193, 216
MaeIII GTNAC 1 cut(s) 11
MalI GATC 4 cut(s) 200, 312, 374, 632
MbiI CCGCTC 1 cut(s) 110
MboI GATC 4 cut(s) 198, 310, 372, 630
MboII GAAGA 2 cut(s) 685, 733
MhlI GDGCHC 5 cut(s) 164, 432, 470, 511, 713
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 2 cut(s) 436, 458
MluNI TGGCCA 1 cut(s) 443
Mly113I GGCGCC 1 cut(s) 731
MlyI GAGTC 4 cut(s) 19, 47, 55, 254
MmeI TCCRAC 2 cut(s) 288, 606
Mox20I TGGCCA 1 cut(s) 443
MscI TGGCCA 1 cut(s) 443
MseI TTAA 1 cut(s) 705
MslI CAYNNNNRTG 4 cut(s) 290, 360, 366, 716
Msp20I TGGCCA 1 cut(s) 443
MspI CCGG 6 cut(s) 65, 134, 400, 425, 536, 641
MspR9I CCNGG 4 cut(s) 66, 233, 400, 401
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 94, 276
NarI GGCGCC 1 cut(s) 731
NciI CCSGG 3 cut(s) 66, 400, 401
NdeII GATC 4 cut(s) 198, 310, 372, 630
NlaIII CATG 3 cut(s) 365, 474, 554
NlaIV GGNNCC 6 cut(s) 271, 404, 405, 510, 639, 732
NmuCI GTSAC 1 cut(s) 11
NspI RCATGY 1 cut(s) 554
PaeR7I CTCGAG 1 cut(s) 7
PaqCI CACCTGC 1 cut(s) 520
PciI ACATGT 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 676
PinAI ACCGGT 1 cut(s) 535
PkrI GCNGC 3 cut(s) 47, 90, 281
PleI GAGTC 4 cut(s) 19, 47, 55, 254
PluTI GGCGCC 1 cut(s) 734
PmaCI CACGTG 2 cut(s) 94, 157
PmlI CACGTG 2 cut(s) 94, 157
PpsI GAGTC 4 cut(s) 19, 47, 55, 254
Ppu21I YACGTR 2 cut(s) 94, 157
PpuMI RGGWCCY 1 cut(s) 403
PscI ACATGT 1 cut(s) 550
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 231
PspCI CACGTG 2 cut(s) 94, 157
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 6 cut(s) 271, 404, 405, 510, 639, 732
PspPI GGNCC 1 cut(s) 403
PspPPI RGGWCCY 1 cut(s) 403
PspXI VCTCGAGB 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 4 cut(s) 290, 360, 366, 716
SacI GAGCTC 1 cut(s) 432
SaqAI TTAA 1 cut(s) 705
SatI GCNGC 3 cut(s) 46, 89, 280
Sau3AI GATC 4 cut(s) 198, 310, 372, 630
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 4 cut(s) 19, 47, 55, 254
ScrFI CCNGG 4 cut(s) 66, 233, 400, 401
SduI GDGCHC 5 cut(s) 164, 432, 470, 511, 713
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 175
SfoI GGCGCC 1 cut(s) 732
Sfr274I CTCGAG 1 cut(s) 7
SinI GGWCC 1 cut(s) 403
SlaI CTCGAG 1 cut(s) 7
SmaI CCCGGG 1 cut(s) 401
SmiMI CAYNNNNRTG 4 cut(s) 290, 360, 366, 716
SmlI CTYRAG 1 cut(s) 7
SmoI CTYRAG 1 cut(s) 7
Sse9I AATT 2 cut(s) 436, 458
SsiI CCGC 6 cut(s) 45, 110, 280, 380, 656, 662
SspDI GGCGCC 1 cut(s) 730
SspMI CTAG 1 cut(s) 503
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 4 cut(s) 64, 231, 398, 399
TaiI ACGT 4 cut(s) 96, 159, 196, 219
TaqI TCGA 6 cut(s) 8, 201, 321, 432, 620, 699
TaqII GACCGA 1 cut(s) 37
TasI AATT 2 cut(s) 436, 458
TatI WGTACW 1 cut(s) 588
TauI GCSGC 2 cut(s) 48, 282
TfiI GAWTC 1 cut(s) 676
Tru1I TTAA 1 cut(s) 705
Tru9I TTAA 1 cut(s) 705
TscAI CASTG 2 cut(s) 251, 718
TseFI GTSAC 1 cut(s) 11
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 734
TspMI CCCGGG 1 cut(s) 399
TspRI CASTG 2 cut(s) 251, 718
VneI GTGCAC 2 cut(s) 160, 466
VpaK11BI GGWCC 1 cut(s) 403
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 2 cut(s) 436, 458
XceI RCATGY 1 cut(s) 554
XhoI CTCGAG 1 cut(s) 7
XmaI CCCGGG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.