Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Reverse (-)

20236689 .. 20239536

Gene Structure 2848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG201500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTTTATGCACTTTATCAGTTTAGCATGCAACCCATAAACCAGTTCTATTTTACATTGCGTGATGATCTAGACTATCTCGATGGGAAGCATACAGTTGATGATAATGTGCGTCTTGAAGATGATTGGGTGCCTATGGATGAAGAATTGGCTCCTGGAGAGCTTGAGGAGCGTCTTCGTGATAAAGATGCACATTCCAGTGCTGTTGTACTTGAGAGTGATGAGGACTTGTTCACAATTTTCTCACGCTTTGGAACTGTGCAAGCGGCTGACATAATACGTGATTATAAGACTGGAGACAGTTTGTGTTATGCGTTCATAGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

109

Amino Acids

12.66

Weight (kDa)

4.14

Isoelectric Point (pI)

29.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	74 - 107	2.7e-06	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	288
AccB1I	GGYRCC	1 cut(s)	130
AciI	CCGC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	167
BccI	CCATC	1 cut(s)	77
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	2 cut(s)	132, 153
BmrFI	CCNGG	1 cut(s)	156
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	2 cut(s)	177, 315
BpuEI	CTTGAG	2 cut(s)	185, 233
BsaAI	YACGTR	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	43, 198, 298
Bse3DI	GCAATG	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	145
BseMI	GCAATG	1 cut(s)	56
BseNI	ACTGG	3 cut(s)	43, 198, 298
BseRI	GAGGAG	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	67
BspACI	CCGC	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	132, 153
BspT107I	GGYRCC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	56
BsrI	ACTGG	3 cut(s)	43, 198, 298
BssMI	GATC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	3 cut(s)	97, 259, 302
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	29, 264
BstF5I	GGATG	1 cut(s)	145
BstKTI	GATC	1 cut(s)	70
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	154
BstV2I	GAAGAC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	29, 264
CseI	GACGC	2 cut(s)	101, 161
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	3 cut(s)	152, 163, 269
CviKI_1	RGCY	3 cut(s)	152, 163, 269
CviQI	GTAC	1 cut(s)	209
DpnI	GATC	1 cut(s)	69
DpnII	GATC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	1 cut(s)	31
FaiI	YATR	9 cut(s)	9, 29, 38, 93, 137, 275, 288, 312, 320
FatI	CATG	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	267
GsuI	CTGGAG	2 cut(s)	177, 315
HgaI	GACGC	2 cut(s)	101, 161
Hin1II	CATG	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188III	TCNNGA	4 cut(s)	71, 80, 116, 179
Hpy8I	GTNNAC	1 cut(s)	234
HpyCH4III	ACNGT	3 cut(s)	97, 259, 302
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	4 cut(s)	11, 31, 191, 262
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	1 cut(s)	31
Kzo9I	GATC	1 cut(s)	67
LmnI	GCTCC	2 cut(s)	157, 169
LpnPI	CCDG	5 cut(s)	56, 141, 168, 211, 279
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	1 cut(s)	280
MalI	GATC	1 cut(s)	69
MboI	GATC	1 cut(s)	67
MboII	GAAGA	3 cut(s)	131, 155, 167
MluCI	AATT	2 cut(s)	146, 237
MnlI	CCTC	2 cut(s)	160, 217
MslI	CAYNNNNRTG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	1 cut(s)	67
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	132, 153
NspI	RCATGY	1 cut(s)	31
PaeI	GCATGC	1 cut(s)	31
PfoI	TCCNGGA	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	268
Ppu21I	YACGTR	1 cut(s)	281
PsiI	TTATAA	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	2 cut(s)	132, 153
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	198
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	67
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	3 cut(s)	165, 283, 325
SfaNI	GCATC	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	164, 212
SmoI	CTYRAG	2 cut(s)	164, 212
SphI	GCATGC	1 cut(s)	31
Sse9I	AATT	2 cut(s)	146, 237
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	3 cut(s)	97, 259, 302
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	146, 237
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	156, 307
TspRI	CASTG	1 cut(s)	205
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	1 cut(s)	31
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.