Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Forward (+)

20706841 .. 20708737

Gene Structure 1897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCAGTGCTTATAGTGACAAGCTTAGGAGAGATAGTTGTGGATTTGCATACAGACAAGTGCCCTCTGACTTGTAAAAACTTCTTGAAGCTCTGCAAGATAAAGTATTATAATGGATGTCTTTTTCACACGGTTCAGAAGGATTTTACTGCACAGACTGGTGACCCAACTGGAACAGGTTCTGGTGGCGATTCCGTCTACAAATTTTTATATGGTGATCAGGCGCGCTTTTTCAACGATGAGATTCATCTTGATTTGAAGCATTCTAAGACAGGCACGGTTGCAATGGCTAGTGCGGGAGAGAATCTCAATGCTTCTCAGTTCTACTTGACATTGCGTGATGATCTAGACTATCTTGATGGAAGGCACACATTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

127

Amino Acids

14.11

Weight (kDa)

5.88

Isoelectric Point (pI)

13.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	4 - 125	1.3e-33	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	226
AciI	CCGC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	88, 235, 259
AluBI	AGCT	2 cut(s)	24, 91
AluI	AGCT	2 cut(s)	24, 91
AlwNI	CAGNNNCTG	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	178
AspLEI	GCGC	2 cut(s)	226, 228
AsuHPI	GGTGA	2 cut(s)	173, 227
BaeGI	GKGCMC	1 cut(s)	65
BccI	CCATC	1 cut(s)	353
BclI	TGATCA	1 cut(s)	217
BfaI	CTAG	2 cut(s)	291, 347
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
Bpu10I	CCTNAGC	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse1I	ACTGG	2 cut(s)	163, 175
Bse3DI	GCAATG	2 cut(s)	291, 332
BseGI	GGATG	1 cut(s)	122
BseMI	GCAATG	2 cut(s)	291, 332
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	163, 175
BsePI	GCGCGC	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	65
BsgI	GTGCAG	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	2 cut(s)	217, 343
BspACI	CCGC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	226
BsrDI	GCAATG	2 cut(s)	291, 332
BsrI	ACTGG	2 cut(s)	163, 175
BssHII	GCGCGC	1 cut(s)	224
BssMI	GATC	2 cut(s)	217, 343
Bst4CI	ACNGT	2 cut(s)	133, 280
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	25, 267, 318
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	2 cut(s)	226, 228
BstKTI	GATC	2 cut(s)	220, 346
BstMBI	GATC	2 cut(s)	217, 343
BstPI	GGTNACC	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	65
BstUI	CGCG	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	2 cut(s)	226, 228
CviJI	RGCY	3 cut(s)	24, 91, 290
CviKI_1	RGCY	3 cut(s)	24, 91, 290
DdeI	CTNAG	3 cut(s)	25, 267, 318
DpnI	GATC	2 cut(s)	219, 345
DpnII	GATC	2 cut(s)	217, 343
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
FaiI	YATR	5 cut(s)	14, 51, 111, 211, 213
FauI	CCCGC	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	198
FokI	GGATG	1 cut(s)	129
FspBI	CTAG	2 cut(s)	291, 347
GlaI	GCGC	2 cut(s)	225, 227
HhaI	GCGC	2 cut(s)	226, 228
Hin6I	GCGC	2 cut(s)	224, 226
HinP1I	GCGC	2 cut(s)	224, 226
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	3 cut(s)	191, 244, 304
HphI	GGTGA	2 cut(s)	173, 227
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	69, 138
Hpy188III	TCNNGA	4 cut(s)	85, 251, 347, 356
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	133, 357
HpyCH4III	ACNGT	2 cut(s)	133, 280
HpyCH4V	TGCA	4 cut(s)	49, 96, 152, 284
HpyF3I	CTNAG	3 cut(s)	25, 267, 318
HspAI	GCGC	2 cut(s)	224, 226
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 343
LpnPI	CCDG	6 cut(s)	144, 156, 162, 168, 206, 258
MaeI	CTAG	2 cut(s)	291, 347
MaeIII	GTNAC	2 cut(s)	16, 161
MalI	GATC	2 cut(s)	219, 345
MboI	GATC	2 cut(s)	217, 343
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	1 cut(s)	203
MnlI	CCTC	1 cut(s)	75
MroXI	GAANNNNTTC	1 cut(s)	178
MslI	CAYNNNNRTG	1 cut(s)	376
Mva1269I	GAATGC	1 cut(s)	262
MvnI	CGCG	1 cut(s)	226
NdeII	GATC	2 cut(s)	217, 343
NmuCI	GTSAC	2 cut(s)	16, 161
PauI	GCGCGC	1 cut(s)	224
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	191, 244, 304
PsiI	TTATAA	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	182
PteI	GCGCGC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	376
Sau3AI	GATC	2 cut(s)	217, 343
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	3 cut(s)	26, 93, 181
SmiMI	CAYNNNNRTG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	2 cut(s)	291, 347
TaaI	ACNGT	2 cut(s)	133, 280
TasI	AATT	1 cut(s)	203
TfiI	GAWTC	3 cut(s)	191, 244, 304
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	2 cut(s)	16, 161
Tsp45I	GTSAC	2 cut(s)	16, 161
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	2 cut(s)	291, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.