Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009679.1

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Reverse (-)

18918 .. 21079

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009679.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgtcagtgcttatagtgacgagtttgggggatatagttgtggatttgtacacagacaggtgtcctcttactgccaagaacttcttgaagctctgcaagataaagtattacaatgggtgtctctttcacacagtccagaaggattttactgcacagactggtgacccaactggaacgggttctggtggtgattcaatttacaaatttttgtatggtgatcaggctcgcttttttggtgatgagattcatcttgatttgaagcatgctaaaacaggcacaattgccatggccagtgctggagagaatctcaatgcctctcagttctattttacattgcgtgatgatctagactatctcgatgggaagcatacagtttttggggagatagcagaggggttggagacattgacaaggatcaatgaggcttatgtggacgagaccaacagaccctataaaaatattagaatcaagcttacctacatattggatgatccttttgaagatccttcacaactatctgagttaattcctggagcctcgctggaaggcaaaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

185

Amino Acids

20.61

Weight (kDa)

4.84

Isoelectric Point (pI)

16.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	422, 485, 497
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	203
AfaI	GTAC	1 cut(s)	50
AgsI	TTSAA	4 cut(s)	88, 195, 259, 500
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	2 cut(s)	91, 472
AluI	AGCT	2 cut(s)	91, 472
Alw26I	GTCTC	3 cut(s)	125, 395, 431
AlwI	GGATC	3 cut(s)	422, 485, 497
AoxI	GGCC	1 cut(s)	288
ApoI	RAATTY	1 cut(s)	203
Asp700I	GAANNNNTTC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	173, 200, 227, 248
BalI	TGGCCA	1 cut(s)	290
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	531
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	3 cut(s)	125, 395, 431
BfaI	CTAG	1 cut(s)	347
Bme1390I	CCNGG	1 cut(s)	531
BmiI	GGNNCC	1 cut(s)	535
BmrFI	CCNGG	1 cut(s)	531
BoxI	GACNNNNGTC	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	291, 323
BpmI	CTGGAG	2 cut(s)	318, 552
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	285
Bse1I	ACTGG	3 cut(s)	163, 175, 291
Bse3DI	GCAATG	1 cut(s)	332
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	493
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	2 cut(s)	332, 510
BseNI	ACTGG	3 cut(s)	163, 175, 291
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	290
BsmAI	GTCTC	3 cut(s)	125, 395, 431
BsnI	GGCC	1 cut(s)	290
Bso31I	GGTCTC	1 cut(s)	431
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	217, 343, 414, 490, 502
Bsp19I	CCATGG	1 cut(s)	285
BspANI	GGCC	1 cut(s)	290
BspCNI	CTCAG	2 cut(s)	331, 511
BspLI	GGNNCC	1 cut(s)	535
BspPI	GGATC	3 cut(s)	422, 485, 497
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	3 cut(s)	163, 175, 291
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	5 cut(s)	217, 343, 414, 490, 502
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	2 cut(s)	133, 373
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	226, 264
BstDEI	CTNAG	2 cut(s)	318, 519
BstDSI	CCRYGG	1 cut(s)	285
BstEII	GGTNACC	1 cut(s)	161
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	5 cut(s)	220, 346, 417, 493, 505
BstMAI	GTCTC	3 cut(s)	125, 395, 431
BstMBI	GATC	5 cut(s)	217, 343, 414, 490, 502
BstNI	CCWGG	1 cut(s)	531
BstNSI	RCATGY	1 cut(s)	266
BstPAI	GACNNNNGTC	1 cut(s)	60
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	502
BstYI	RGATCY	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	2 cut(s)	12, 298
Cac8I	GCNNGC	2 cut(s)	226, 264
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	2 cut(s)	263, 286
CviJI	RGCY	6 cut(s)	91, 224, 290, 425, 472, 536
CviKI_1	RGCY	6 cut(s)	91, 224, 290, 425, 472, 536
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	318, 519
DpnI	GATC	5 cut(s)	219, 345, 416, 492, 504
DpnII	GATC	5 cut(s)	217, 343, 414, 490, 502
EaeI	YGGCCR	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	431
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	266, 289
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	2 cut(s)	262, 285
FbaI	TGATCA	1 cut(s)	217
FokI	GGATG	1 cut(s)	500
FspBI	CTAG	1 cut(s)	347
GsuI	CTGGAG	2 cut(s)	318, 552
HaeIII	GGCC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	266, 289
HindIII	AAGCTT	1 cut(s)	470
HinfI	GANTC	4 cut(s)	191, 244, 304, 465
HphI	GGTGA	4 cut(s)	173, 200, 227, 248
Hpy166II	GTNNAC	2 cut(s)	51, 433
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	5 cut(s)	85, 136, 251, 347, 356
Hpy8I	GTNNAC	2 cut(s)	51, 433
HpyAV	CCTTC	3 cut(s)	133, 516, 539
HpyCH4III	ACNGT	2 cut(s)	133, 373
HpyCH4V	TGCA	2 cut(s)	96, 152
HpyF3I	CTNAG	2 cut(s)	318, 519
Hsp92II	CATG	2 cut(s)	266, 289
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	5 cut(s)	217, 343, 414, 490, 502
LmnI	GCTCC	1 cut(s)	533
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	2 cut(s)	16, 161
MalI	GATC	5 cut(s)	219, 345, 416, 492, 504
MboI	GATC	5 cut(s)	217, 343, 414, 490, 502
MboII	GAAGA	1 cut(s)	512
MfeI	CAATTG	1 cut(s)	279
MflI	RGATCY	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	4 cut(s)	195, 203, 279, 525
MluNI	TGGCCA	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	5 cut(s)	75, 325, 385, 415, 547
Mox20I	TGGCCA	1 cut(s)	290
MroXI	GAANNNNTTC	1 cut(s)	178
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	531
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	531
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	217, 343, 414, 490, 502
NlaIII	CATG	2 cut(s)	266, 289
NlaIV	GGNNCC	1 cut(s)	535
NmuCI	GTSAC	2 cut(s)	16, 161
NspI	RCATGY	1 cut(s)	266
PaeI	GCATGC	1 cut(s)	266
PdmI	GAANNNNTTC	1 cut(s)	178
PfeI	GAWTC	4 cut(s)	191, 244, 304, 465
PfoI	TCCNGGA	1 cut(s)	529
PshAI	GACNNNNGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	529
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	502
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	524
Sau3AI	GATC	5 cut(s)	217, 343, 414, 490, 502
ScrFI	CCNGG	1 cut(s)	531
SetI	ASST	4 cut(s)	62, 93, 474, 479
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	4 cut(s)	195, 203, 279, 525
SspI	AATATT	1 cut(s)	460
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	133, 373
TaqI	TCGA	1 cut(s)	357
TasI	AATT	4 cut(s)	195, 203, 279, 525
TatI	WGTACW	1 cut(s)	48
TfiI	GAWTC	4 cut(s)	191, 244, 304, 465
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	2 cut(s)	12, 298
TseFI	GTSAC	2 cut(s)	16, 161
Tsp45I	GTSAC	2 cut(s)	16, 161
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	2 cut(s)	12, 298
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	346
XceI	RCATGY	1 cut(s)	266
XmnI	GAANNNNTTC	1 cut(s)	178
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.