Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005064

Physical Location & Seq

Genomic Coordinates Forward (+)

73868023 .. 73869914

Gene Structure 1892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGTCTGTATTGCAGGTTTTTGGGGAGATAGCAGAGGGGTTGGAGACATTGACAAGGATCAATGAGGCTTATGTGGATGAGAGCAACAGACCCTATAAAAATATTAGAATCAAGCATACCTACATATTGGATGATCCTTTTGATGATCCTTCACAACTATCTGAGTTAATTCCTGGAGCCTCCCCGGAAGGCAAACCAAAGGATGAGGTTGATGATAATGTGCGTCTTGAAGATGATTATTGGGTGCCTATGGATGAAGAATTGGCTCCTGGAGAGCTTGAGGAGCGTCTTCGTGCCAAAGATGCACATTCCAGTGCTGTTGTACTTGAGAGTTTGCTTAATGTGATGTTGCTTGATCTTCCTTTCCCACTTTCTTGCCATGTCTGTGTAACAGATAGGGATATTCCTGATGTTGAGATAAAGCCGCCTGAGAATGTGCTTTTTGTTTGTAAACTGAATCCAGTCACTGAATTCAGTGGTTACAGAAAGAGGAGTGCAGATAGTGATAGAGAGAAGCATAAGGAGAGACGAGGAGACAGAGATGATAATATTGACCAGCAGGAGAGTGGAAAGAGGTATGCAGATGACGGTACGTATGCAGCTCAGAGGGGAGATGAAGATTACAGAAAAAGGACTGCAGATGGTGATAGATCCACAGAAAGGAGTAGGGATAGAGAATACAGAAAGAGAAGTGTAGCTAATGGTAGCCCTTCAGAAAACAGAGACGATGGATTTTATAGAAAGAGACGTGCAGAGCAAGCTAAGCATGCAGAAATGAGGGATGATAGAAACTTTAGGAAGAAATCTGTTGATGACAGACGAGACAAGAGAGATGAACCAGTTCATAAGAGAAGCGCAGGGAAGGAAGATAGAGAACATAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0001932 GO:0003674 GO:0003676 GO:0003723 GO:0003755 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031399 GO:0032268 GO:0036211 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901407 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase RRM_1 zf-CCHC

Protein Analysis

295

Amino Acids

34.34

Weight (kDa)

5.34

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53720 AT1G53720
fragaria_vesca	FvH4_3g15530 FvH4_3g15530 FvH4_3g15530 FvH4_3g21900 FvH4_4g19390
malus_domestica	MD05G1222400.v1.1 MD10G1204000.v1.1
prunus_persica	Prupe.4G137900_v2.0.a1
pyrus_communis	pycom05g20510 pycom10g17460 pycom10g17470
rosa_chinensis	RchiOBHm_Chr5g0026161
rosa_laevigata	RLG00000032908
rosa_multiflora	Rmu_sc0009679.1_g000004
rosa_roxburghii	Rroxscaffold_1G00053040 Rroxscaffold_1G00053150
rosa_rugosa	Rorug05G0091100 Rorug05G0091200 Rorug05G0091300 Rorug05G0091400 Rorug05G0092300
rosa_samantha	Rh5AG184100 Rh5BG180900 Rh5BG182100 Rh5CG199900 Rh5CG201500 Rh5DG182500
rosa_wichuraiana	Rw5G016660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	244
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	4 cut(s)	65, 128, 140, 645
AcsI	RAATTY	1 cut(s)	470
AcuI	CTGAAG	1 cut(s)	696
AfaI	GTAC	2 cut(s)	324, 592
AfiI	CCNNNNNNNGG	1 cut(s)	660
AgsI	TTSAA	1 cut(s)	230
AjiI	CACGTC	1 cut(s)	749
AjnI	CCWGG	2 cut(s)	172, 268
AluBI	AGCT	4 cut(s)	277, 602, 698, 761
AluI	AGCT	4 cut(s)	277, 602, 698, 761
Alw26I	GTCTC	6 cut(s)	38, 520, 528, 717, 739, 816
AlwI	GGATC	4 cut(s)	65, 128, 140, 645
AlwNI	CAGNNNCTG	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	599
ApoI	RAATTY	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	857
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	611
BccI	CCATC	2 cut(s)	635, 722
BciT130I	CCWGG	2 cut(s)	174, 270
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	6 cut(s)	38, 520, 528, 717, 739, 816
BfmI	CTRYAG	1 cut(s)	636
BfuAI	ACCTGC	1 cut(s)	4
BisI	GCNGC	2 cut(s)	425, 600
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	2 cut(s)	426, 601
Bme1390I	CCNGG	3 cut(s)	174, 185, 270
BmgBI	CACGTC	1 cut(s)	749
BmiI	GGNNCC	3 cut(s)	178, 246, 267
BmrFI	CCNGG	3 cut(s)	174, 185, 270
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	281
BpmI	CTGGAG	2 cut(s)	195, 291
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	299, 347
BpuMI	CCSGG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	3 cut(s)	312, 461, 839
BseBI	CCWGG	2 cut(s)	174, 270
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	5 cut(s)	82, 136, 208, 259, 787
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMII	CTCAG	3 cut(s)	153, 420, 617
BseNI	ACTGG	3 cut(s)	312, 461, 839
BseRI	GAGGAG	3 cut(s)	296, 505, 546
BseXI	GCAGC	1 cut(s)	611
BsgI	GTGCAG	2 cut(s)	516, 771
BshNI	GGYRCC	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	6 cut(s)	38, 520, 528, 717, 739, 816
BsmBI	CGTCTC	3 cut(s)	520, 717, 739
Bsp143I	GATC	5 cut(s)	57, 133, 145, 355, 650
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	1 cut(s)	425
BspCNI	CTCAG	3 cut(s)	154, 421, 616
BspLI	GGNNCC	3 cut(s)	178, 246, 267
BspMAI	CTGCAG	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	4 cut(s)	65, 128, 140, 645
BspT107I	GGYRCC	1 cut(s)	244
BsrI	ACTGG	3 cut(s)	312, 461, 839
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	5 cut(s)	57, 133, 145, 355, 650
Bst2UI	CCWGG	2 cut(s)	174, 270
Bst4CI	ACNGT	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	759, 768
BstDEI	CTNAG	4 cut(s)	162, 429, 603, 762
BstF5I	GGATG	5 cut(s)	82, 136, 208, 259, 787
BstHHI	GCGC	1 cut(s)	857
BstKTI	GATC	5 cut(s)	60, 136, 148, 358, 653
BstMAI	GTCTC	6 cut(s)	38, 520, 528, 717, 739, 816
BstMBI	GATC	5 cut(s)	57, 133, 145, 355, 650
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 302, 758, 763, 767
BstNI	CCWGG	2 cut(s)	174, 270
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	3 cut(s)	172, 183, 268
BstSFI	CTRYAG	1 cut(s)	636
BstSNI	TACGTA	1 cut(s)	594
BstV1I	GCAGC	1 cut(s)	611
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BtrI	CACGTC	1 cut(s)	749
BtsCI	GGATG	5 cut(s)	82, 136, 208, 259, 787
BtsIMutI	CAGTG	3 cut(s)	319, 465, 481
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	2 cut(s)	759, 768
CaiI	CAGNNNCTG	1 cut(s)	467
CfoI	GCGC	1 cut(s)	857
CseI	GACGC	2 cut(s)	212, 275
Csp6I	GTAC	2 cut(s)	323, 591
CviAII	CATG	2 cut(s)	380, 767
CviJI	RGCY	9 cut(s)	68, 179, 266, 277, 424, 602, 698, 708, 761
CviKI_1	RGCY	9 cut(s)	68, 179, 266, 277, 424, 602, 698, 708, 761
CviQI	GTAC	2 cut(s)	323, 591
DdeI	CTNAG	4 cut(s)	162, 429, 603, 762
DpnI	GATC	5 cut(s)	59, 135, 147, 357, 652
DpnII	GATC	5 cut(s)	57, 133, 145, 355, 650
Eco105I	TACGTA	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	696
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	2 cut(s)	172, 268
Esp3I	CGTCTC	3 cut(s)	520, 717, 739
FaeI	CATG	2 cut(s)	383, 770
FatI	CATG	2 cut(s)	379, 766
Fnu4HI	GCNGC	2 cut(s)	425, 600
FokI	GGATG	5 cut(s)	89, 143, 215, 266, 794
Fsp4HI	GCNGC	2 cut(s)	425, 600
GlaI	GCGC	1 cut(s)	856
GluI	GCNGC	2 cut(s)	425, 600
GsuI	CTGGAG	2 cut(s)	195, 291
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	2 cut(s)	212, 275
HhaI	GCGC	1 cut(s)	857
Hin1II	CATG	2 cut(s)	383, 770
Hin6I	GCGC	1 cut(s)	855
HinP1I	GCGC	1 cut(s)	855
HinfI	GANTC	2 cut(s)	108, 457
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	656
Hpy166II	GTNNAC	1 cut(s)	452
Hpy188I	TCNGA	3 cut(s)	163, 606, 715
Hpy188III	TCNNGA	2 cut(s)	227, 407
Hpy8I	GTNNAC	1 cut(s)	452
HpyAV	CCTTC	5 cut(s)	159, 182, 720, 856, 876
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	2 cut(s)	593, 748
HpyCH4V	TGCA	8 cut(s)	13, 305, 497, 581, 599, 638, 752, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 302, 758, 763, 767
HpyF3I	CTNAG	4 cut(s)	162, 429, 603, 762
HpySE526I	ACGT	2 cut(s)	593, 748
Hsp92II	CATG	2 cut(s)	383, 770
HspAI	GCGC	1 cut(s)	855
Kzo9I	GATC	5 cut(s)	57, 133, 145, 355, 650
LmnI	GCTCC	3 cut(s)	176, 271, 283
Lsp1109I	GCAGC	1 cut(s)	611
LweI	GCATC	1 cut(s)	292
MaeII	ACGT	2 cut(s)	593, 748
MaeIII	GTNAC	3 cut(s)	388, 463, 479
MalI	GATC	5 cut(s)	59, 135, 147, 357, 652
MboI	GATC	5 cut(s)	57, 133, 145, 355, 650
MboII	GAAGA	7 cut(s)	242, 269, 281, 350, 629, 811, 878
MflI	RGATCY	1 cut(s)	650
MluCI	AATT	3 cut(s)	168, 260, 470
MmeI	TCCRAC	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	2 cut(s)	167, 339
MslI	CAYNNNNRTG	2 cut(s)	312, 384
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	174, 185, 270
MvaI	CCWGG	2 cut(s)	174, 270
MwoI	GCNNNNNNNGC	5 cut(s)	283, 302, 758, 763, 767
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	5 cut(s)	57, 133, 145, 355, 650
NlaIII	CATG	2 cut(s)	383, 770
NlaIV	GGNNCC	3 cut(s)	178, 246, 267
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	770
PaeI	GCATGC	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	2 cut(s)	108, 457
PfoI	TCCNGGA	2 cut(s)	172, 268
PkrI	GCNGC	2 cut(s)	426, 601
Ppu21I	YACGTR	1 cut(s)	594
Psp6I	CCWGG	2 cut(s)	172, 268
PspGI	CCWGG	2 cut(s)	172, 268
PspN4I	GGNNCC	3 cut(s)	178, 246, 267
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	2 cut(s)	324, 592
RsaNI	GTAC	2 cut(s)	323, 591
RseI	CAYNNNNRTG	2 cut(s)	312, 384
SaqAI	TTAA	2 cut(s)	167, 339
SatI	GCNGC	2 cut(s)	425, 600
Sau3AI	GATC	5 cut(s)	57, 133, 145, 355, 650
ScrFI	CCNGG	3 cut(s)	174, 185, 270
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	312, 384
SmlI	CTYRAG	2 cut(s)	278, 326
SmoI	CTYRAG	2 cut(s)	278, 326
SnaBI	TACGTA	1 cut(s)	594
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	3 cut(s)	168, 260, 470
SsiI	CCGC	1 cut(s)	425
SspI	AATATT	2 cut(s)	103, 550
StyD4I	CCNGG	3 cut(s)	172, 183, 268
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	2 cut(s)	596, 751
TasI	AATT	3 cut(s)	168, 260, 470
TatI	WGTACW	1 cut(s)	322
TauI	GCSGC	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	108, 457
Tru1I	TTAA	2 cut(s)	167, 339
Tru9I	TTAA	2 cut(s)	167, 339
TscAI	CASTG	3 cut(s)	319, 472, 481
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	270, 630, 833, 849
TspRI	CASTG	3 cut(s)	319, 472, 481
XapI	RAATTY	1 cut(s)	470
XceI	RCATGY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.