Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013377

Physical Location & Seq

Genomic Coordinates Reverse (-)

20279507 .. 20280952

Gene Structure 1446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGCCCATGAGTTTGCCTCCAGGATTCAGGTTTCATCCCACTGATGAAGAACTGGTGGCTTACTATCTTGATAGGAAGGTCAACGGCCAAGCCATTGAGCTCGAGATCATCCCAGAAGTTGATCTTTATAAATGCGAGCCATGGGACTTGCCTGAAAAGTCATTTTTGCCGGGAAACGACATGGAATGGTACTTTTACAGCACAAGGGATAAGAAGTATCCAAATGGCTCTAGGACGAACCGTGCGACCCGAGCGGGTTACTGGAAGGCCACGGGGAAAGATCGTACAGTAGAATCAAAGAAGATGAAGATGGGAATGAAGAAGACACTGGTTTATTATAGAGGAAGGGCTCCTCATGGCCTTCGTACTAATTGGGTCATGCATGAATATCGTCTCACGCACGCTCCTTCCTCCTCCTTGAAGGAGTCGTATGCATTGTGCCGAGTGTTTAAGAAGAACATACAAATTCCAAAGAGAAAAGGGGAAGAAGAAGAAGCAGAAGAAGAGAGCACTAGTGTAGGAAAAGAAGAGGAAGAAGAAAAGGAGAAGAAGTGGAGAAAATGTGATGGTAATTATATTGAAGACGAGAGCTTGAAAAGAGCATCCGCGGAGACATCTTCATCAGAGCTAACTCAAGGGGTCCTTTTAGACGAAGCAAACAGCTCATCCATATTTGCTCTTCATTTCTCATCTTCTCTTCTGGACGATCATGATCATCTTTTCTCAAACTATTCTCATCAGCTTCCATATCATCCTCCTCTTCAACTCCAAGATTTCCCTCAACTTTCTATGAACGAAGCAGAGATTATGTCAATCCAACAAGACTTTCAATGCAGAGACTCTATGAACGGGACACTTGACGAAATCTTCTCTTCTTCCGCCACTTTCCCCGCTTCCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

301

Amino Acids

34.77

Weight (kDa)

5.49

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	7e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54330
fragaria_vesca	FvH4_3g13980
malus_domestica	MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica	Prupe.4G126800_v2.0.a1
pyrus_communis	pycom05g21560 pycom10g18340
rosa_chinensis	RchiOBHm_Chr5g0023211
rosa_laevigata	RLG00000032709
rosa_multiflora	Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056140
rosa_rugosa	Rorug05G0078000
rosa_samantha	Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana	Rw5G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	257
AccII	CGCG	1 cut(s)	611
AciI	CCGC	5 cut(s)	257, 609, 611, 882, 894
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	194, 289, 370
AgsI	TTSAA	5 cut(s)	424, 584, 598, 767, 833
AhlI	ACTAGT	1 cut(s)	515
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	813, 845
AluBI	AGCT	5 cut(s)	103, 594, 631, 666, 745
AluI	AGCT	5 cut(s)	103, 594, 631, 666, 745
Alw21I	GWGCWC	2 cut(s)	105, 515
Alw26I	GTCTC	3 cut(s)	401, 608, 834
Ama87I	CYCGRG	2 cut(s)	104, 252
AoxI	GGCC	3 cut(s)	88, 270, 361
ApoI	RAATTY	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	643
AsuC2I	CCSGG	1 cut(s)	174
AvaI	CYCGRG	2 cut(s)	104, 252
AvaII	GGWCC	1 cut(s)	643
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	105, 355
BbsI	GAAGAC	2 cut(s)	332, 591
Bbv12I	GWGCWC	2 cut(s)	105, 515
BccI	CCATC	2 cut(s)	307, 563
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	231
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	3 cut(s)	401, 608, 834
BcuI	ACTAGT	1 cut(s)	515
BfaI	CTAG	2 cut(s)	234, 516
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	231
Bme1390I	CCNGG	2 cut(s)	24, 174
Bme18I	GGWCC	1 cut(s)	643
BmeT110I	CYCGRG	2 cut(s)	104, 252
BmgT120I	GGNCC	1 cut(s)	643
BmiI	GGNNCC	3 cut(s)	6, 354, 644
BmrFI	CCNGG	2 cut(s)	24, 174
BmsI	GCATC	1 cut(s)	614
BpiI	GAAGAC	2 cut(s)	332, 591
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	621
BpuMI	CCSGG	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	143, 273, 609
BsaXI	ACNNNNNCTCC	6 cut(s)	391, 421, 539, 550, 569, 580
Bse1I	ACTGG	3 cut(s)	60, 269, 336
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	143, 273, 609
BseGI	GGATG	5 cut(s)	37, 111, 605, 668, 754
BseJI	GATNNNNATC	1 cut(s)	714
BseNI	ACTGG	3 cut(s)	60, 269, 336
BseRI	GAGGAG	3 cut(s)	345, 406, 750
Bsh1236I	CGCG	1 cut(s)	611
BshFI	GGCC	3 cut(s)	90, 272, 363
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	105, 515
BsiHKCI	CYCGRG	2 cut(s)	104, 252
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	2 cut(s)	161, 868
BsmAI	GTCTC	3 cut(s)	401, 608, 834
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	2 cut(s)	161, 868
BsnI	GGCC	3 cut(s)	90, 272, 363
BsoBI	CYCGRG	2 cut(s)	104, 252
Bsp1286I	GDGCHC	3 cut(s)	105, 355, 515
Bsp143I	GATC	5 cut(s)	108, 124, 283, 709, 715
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	5 cut(s)	257, 609, 611, 882, 894
BspANI	GGCC	3 cut(s)	90, 272, 363
BspFNI	CGCG	1 cut(s)	611
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	6, 354, 644
BspQI	GCTCTTC	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	4
BsrBI	CCGCTC	1 cut(s)	257
BsrI	ACTGG	3 cut(s)	60, 269, 336
BssECI	CCNNGG	3 cut(s)	143, 273, 609
BssMI	GATC	5 cut(s)	108, 124, 283, 709, 715
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	245, 292
Bst6I	CTCTTC	6 cut(s)	501, 525, 687, 705, 768, 880
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	140, 405
BstDSI	CCRYGG	3 cut(s)	143, 273, 609
BstF5I	GGATG	5 cut(s)	37, 111, 605, 668, 754
BstFNI	CGCG	1 cut(s)	611
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	5 cut(s)	111, 127, 286, 712, 718
BstMAI	GTCTC	3 cut(s)	401, 608, 834
BstMBI	GATC	5 cut(s)	108, 124, 283, 709, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	22, 172
BstUI	CGCG	1 cut(s)	611
BstV2I	GAAGAC	2 cut(s)	332, 591
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	3 cut(s)	90, 272, 363
BtgI	CCRYGG	3 cut(s)	143, 273, 609
BtsCI	GGATG	5 cut(s)	37, 111, 605, 668, 754
BtsIMutI	CAGTG	2 cut(s)	42, 329
Cac8I	GCNNGC	2 cut(s)	140, 405
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	643
Cfr42I	CCGCGG	1 cut(s)	612
Csp6I	GTAC	3 cut(s)	193, 288, 369
CviAII	CATG	7 cut(s)	10, 144, 184, 359, 382, 386, 713
CviQI	GTAC	3 cut(s)	193, 288, 369
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	110, 126, 285, 711, 717
DpnII	GATC	5 cut(s)	108, 124, 283, 709, 715
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	6 cut(s)	501, 525, 687, 705, 768, 880
EarI	CTCTTC	6 cut(s)	501, 525, 687, 705, 768, 880
EciI	GGCGGA	1 cut(s)	871
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	2 cut(s)	105, 355
Eco47I	GGWCC	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	2 cut(s)	104, 252
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	2 cut(s)	387, 439
EcoT38I	GRGCYC	2 cut(s)	105, 355
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	7 cut(s)	13, 147, 187, 362, 385, 389, 716
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 630, 662
FaqI	GGGAC	2 cut(s)	161, 868
FatI	CATG	7 cut(s)	9, 143, 183, 358, 381, 385, 712
FauI	CCCGC	2 cut(s)	250, 901
FbaI	TGATCA	1 cut(s)	715
FokI	GGATG	5 cut(s)	24, 98, 592, 655, 741
FriOI	GRGCYC	2 cut(s)	105, 355
FspBI	CTAG	2 cut(s)	234, 516
GlaI	GCGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	90, 272, 363
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	13, 147, 187, 362, 385, 389, 716
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	27, 296, 428, 842
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	628
Hpy188III	TCNNGA	4 cut(s)	71, 106, 704, 713
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	6 cut(s)	73, 262, 342, 374, 418, 420
HpyCH4III	ACNGT	2 cut(s)	245, 292
HpyCH4V	TGCA	3 cut(s)	385, 437, 837
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	13, 147, 187, 362, 385, 389, 716
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	715
KspI	CCGCGG	1 cut(s)	612
Kzo9I	GATC	5 cut(s)	108, 124, 283, 709, 715
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	2 cut(s)	358, 412
LweI	GCATC	1 cut(s)	614
MaeI	CTAG	2 cut(s)	234, 516
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	5 cut(s)	110, 126, 285, 711, 717
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	5 cut(s)	108, 124, 283, 709, 715
MhlI	GDGCHC	3 cut(s)	105, 355, 515
MluCI	AATT	3 cut(s)	373, 468, 574
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	437, 836
MmeI	TCCRAC	1 cut(s)	844
MnlI	CCTC	9 cut(s)	30, 338, 366, 424, 427, 526, 768, 771, 792
Mph1103I	ATGCAT	2 cut(s)	387, 439
MseI	TTAA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	24, 174
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	1 cut(s)	611
MwoI	GCNNNNNNNGC	1 cut(s)	254
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	174
NcoI	CCATGG	1 cut(s)	143
NdeII	GATC	5 cut(s)	108, 124, 283, 709, 715
NlaIII	CATG	7 cut(s)	13, 147, 187, 362, 385, 389, 716
NlaIV	GGNNCC	3 cut(s)	6, 354, 644
NmeAIII	GCCGAG	1 cut(s)	470
NsiI	ATGCAT	2 cut(s)	387, 439
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	712
PciSI	GCTCTTC	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	2 cut(s)	27, 296
PfoI	TCCNGGA	1 cut(s)	22
PleI	GAGTC	2 cut(s)	436, 836
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	436, 836
PpuMI	RGGWCCY	1 cut(s)	643
PsiI	TTATAA	1 cut(s)	132
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	6, 354, 644
PspPI	GGNCC	1 cut(s)	643
PspPPI	RGGWCCY	1 cut(s)	643
RsaI	GTAC	3 cut(s)	194, 289, 370
RsaNI	GTAC	3 cut(s)	193, 288, 369
SacI	GAGCTC	1 cut(s)	105
SacII	CCGCGG	1 cut(s)	612
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	1 cut(s)	453
Sau3AI	GATC	5 cut(s)	108, 124, 283, 709, 715
Sau96I	GGNCC	1 cut(s)	643
SchI	GAGTC	2 cut(s)	437, 836
ScrFI	CCNGG	2 cut(s)	24, 174
SduI	GDGCHC	3 cut(s)	105, 355, 515
SetI	ASST	7 cut(s)	35, 84, 105, 596, 633, 668, 747
SfaNI	GCATC	1 cut(s)	614
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	104
Sfr303I	CCGCGG	1 cut(s)	612
SgrBI	CCGCGG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	643
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	104, 636
SmoI	CTYRAG	2 cut(s)	104, 636
SpeI	ACTAGT	1 cut(s)	515
Sse9I	AATT	3 cut(s)	373, 468, 574
SsiI	CCGC	5 cut(s)	257, 609, 611, 882, 894
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	234, 516
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	22, 172
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	245, 292
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	373, 468, 574
TfiI	GAWTC	2 cut(s)	27, 296
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TscAI	CASTG	2 cut(s)	49, 336
TspDTI	ATGAA	9 cut(s)	26, 63, 323, 335, 402, 612, 674, 809, 863
TspRI	CASTG	2 cut(s)	49, 336
VpaK11BI	GGWCC	1 cut(s)	643
XapI	RAATTY	1 cut(s)	468
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	2 cut(s)	234, 516
Zsp2I	ATGCAT	2 cut(s)	387, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.