Rh5CG178800
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0013377
Physical Location & Seq
Forward (+)
17383303 .. 17387130
3828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG178800.1

Sequence Viewer

Length: 846 bp
ATGGCACCCATGAGTCTTCCTCCTGGATTCAGATTCCACCCAACTGATGAAGAGCTCGTTGCTTACTATCTGGACCGAAAGATCAATGGCTGCACCATTGAGCTTGAAATTATTCCAGAGGTCGACCTCTACAAATGTGAACCATGGGATTTGCCTGATAAGTCATTCTTGCCTAGCAAGGATATGGAGTGGTATTTCTACAGCCCGAGGGATAGGAAATACCCGAATGGGTCAAGAACGAATCGGGCTACTCGGGCAGGGTACTGGAAAGCCACCGGAAAAGACCGGGCAGTGAACAGTAACAGGCGTGCGGTTGGGATGAAGAAGACACTGGTGTACTATAGAGGGAGAGCTCCTCATGGCATTAGAACCAACTGGGTTATGCATGAGTACCGGCTCACCGACTCGGTGTGTGGCAGTCCCTCATCATCTCTAAAGGATTCATATGCATTGTGCCGCATTTTCAAAAAGACAATCCAAATACCCAAGAATAACAAAGAAGAAAAGACGATTAAAAACACTCTCTTGAACGAAAAAAAATCAAGGGAAGACACCAGTACTGGCATTAACGAGGGAGAAGCTTCAAGAGGGATAGAAACAGATCAAGATTATGAGAATTATTCTAATCCTGATTATTCCAAATTTCTCTCTGATACCTCTTCTTCTGATCTCACTCAAGGGACACCTACTGAAACTGGCATAGCAGATGATTTACAAGCTCCATTTGCTTCTGATGAAGCTAACAGTTCAGCTAATCTCTACTCTCTTGGTGCCCACTGCTCCTCAAATAATCTATTTCAGGTTTGTATACAAGTGCAATCGCTAACATATGTTTTCATTATTTGA

Protein Analysis

281

Amino Acids

31.92

Weight (kDa)

6.46

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 133 1.6e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54330
fragaria_vesca FvH4_3g13980
malus_domestica MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica Prupe.4G126800_v2.0.a1
pyrus_communis pycom05g21560 pycom10g18340
rosa_chinensis RchiOBHm_Chr5g0023211
rosa_laevigata RLG00000032709
rosa_multiflora Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii Rroxscaffold_1G00056140
rosa_rugosa Rorug05G0078000
rosa_samantha Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana Rw5G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 770
AccI GTMKAC 2 cut(s) 123, 808
AciI CCGC 2 cut(s) 311, 457
AcsI RAATTY 1 cut(s) 641
AfaI GTAC 4 cut(s) 263, 338, 392, 559
AgsI TTSAA 4 cut(s) 107, 466, 529, 585
AjnI CCWGG 1 cut(s) 22
AluBI AGCT 7 cut(s) 55, 103, 353, 581, 719, 740, 752
AluI AGCT 7 cut(s) 55, 103, 353, 581, 719, 740, 752
Alw21I GWGCWC 2 cut(s) 57, 355
Ama87I CYCGRG 2 cut(s) 205, 252
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 2 cut(s) 205, 252
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 775
BanI GGYRCC 2 cut(s) 4, 770
BanII GRGCYC 2 cut(s) 57, 355
BbsI GAAGAC 3 cut(s) 8, 332, 555
Bbv12I GWGCWC 2 cut(s) 57, 355
BbvI GCAGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 287
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 2 cut(s) 199, 340
BisI GCNGC 2 cut(s) 91, 457
BlsI GCNGC 2 cut(s) 92, 458
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 2 cut(s) 24, 287
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 2 cut(s) 205, 252
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 6, 772
BmrFI CCNGG 2 cut(s) 24, 287
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BpiI GAAGAC 3 cut(s) 8, 332, 555
BplI GAGNNNNNCTC 3 cut(s) 36, 340, 372
BpuEI CTTGAG 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 143, 206
BsaWI WCCGGW 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 143, 206
BseGI GGATG 1 cut(s) 324
BseNI ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BseRI GAGGAG 2 cut(s) 345, 772
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 76
BshNI GGYRCC 2 cut(s) 4, 770
BsiHKAI GWGCWC 2 cut(s) 57, 355
BsiHKCI CYCGRG 2 cut(s) 205, 252
BsiSI CCGG 3 cut(s) 276, 286, 394
BslFI GGGAC 2 cut(s) 405, 694
BsmFI GGGAC 2 cut(s) 405, 694
BsoBI CYCGRG 2 cut(s) 205, 252
Bsp1286I GDGCHC 3 cut(s) 57, 355, 775
Bsp143I GATC 3 cut(s) 81, 601, 667
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 2 cut(s) 311, 457
BspLI GGNNCC 2 cut(s) 6, 772
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 2 cut(s) 4, 770
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 143, 206
BssMI GATC 3 cut(s) 81, 601, 667
BssNAI GTATAC 1 cut(s) 809
BssT1I CCWWGG 1 cut(s) 143
Bst1107I GTATAC 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 299, 746
Bst6I CTCTTC 2 cut(s) 45, 664
BstC8I GCNNGC 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 3 cut(s) 84, 604, 670
BstMBI GATC 3 cut(s) 81, 601, 667
BstMWI GCNNNNNNNGC 2 cut(s) 254, 725
BstNI CCWGG 1 cut(s) 24
BstSCI CCNGG 2 cut(s) 22, 285
BstSFI CTRYAG 2 cut(s) 199, 340
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 3 cut(s) 8, 332, 555
BstZ17I GTATAC 1 cut(s) 809
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 2 cut(s) 297, 775
BtsIMutI CAGTG 3 cut(s) 297, 329, 775
Cac8I GCNNGC 1 cut(s) 309
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 4 cut(s) 262, 337, 391, 558
CviAII CATG 4 cut(s) 10, 144, 359, 386
CviQI GTAC 4 cut(s) 262, 337, 391, 558
DpnI GATC 3 cut(s) 83, 603, 669
DpnII GATC 3 cut(s) 81, 601, 667
Eam1104I CTCTTC 2 cut(s) 45, 664
EarI CTCTTC 2 cut(s) 45, 664
Ecl136II GAGCTC 2 cut(s) 55, 353
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 2 cut(s) 57, 355
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 2 cut(s) 55, 353
Eco88I CYCGRG 2 cut(s) 205, 252
EcoICRI GAGCTC 2 cut(s) 55, 353
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 2 cut(s) 387, 451
EcoT38I GRGCYC 2 cut(s) 57, 355
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 4 cut(s) 13, 147, 362, 389
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 405, 694
FatI CATG 4 cut(s) 9, 143, 358, 385
FauNDI CATATG 2 cut(s) 445, 829
FblI GTMKAC 2 cut(s) 123, 808
Fnu4HI GCNGC 2 cut(s) 91, 457
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 2 cut(s) 57, 355
Fsp4HI GCNGC 2 cut(s) 91, 457
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 91, 457
HapII CCGG 3 cut(s) 276, 286, 394
Hin1II CATG 4 cut(s) 13, 147, 362, 389
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 6 cut(s) 13, 27, 33, 241, 404, 440
HpaII CCGG 3 cut(s) 276, 286, 394
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 5 cut(s) 124, 140, 295, 337, 809
Hpy188I TCNGA 4 cut(s) 32, 652, 667, 733
Hpy188III TCNNGA 7 cut(s) 71, 116, 234, 526, 585, 605, 629
Hpy8I GTNNAC 5 cut(s) 124, 140, 295, 337, 809
HpyCH4III ACNGT 2 cut(s) 299, 746
HpyCH4V TGCA 4 cut(s) 93, 385, 449, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 725
Hsp92II CATG 4 cut(s) 13, 147, 362, 389
Kzo9I GATC 3 cut(s) 81, 601, 667
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 358, 724, 785
Lsp1109I GCAGC 1 cut(s) 77
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 83, 603, 669
MboI GATC 3 cut(s) 81, 601, 667
MboII GAAGA 8 cut(s) 8, 62, 334, 337, 512, 560, 651, 654
MhlI GDGCHC 3 cut(s) 57, 355, 775
MluCI AATT 3 cut(s) 108, 616, 641
MlyI GAGTC 2 cut(s) 22, 398
Mph1103I ATGCAT 2 cut(s) 387, 451
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 2 cut(s) 513, 567
MspI CCGG 3 cut(s) 276, 286, 394
MspR9I CCNGG 2 cut(s) 24, 287
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 2 cut(s) 254, 725
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 143
NdeI CATATG 2 cut(s) 445, 829
NdeII GATC 3 cut(s) 81, 601, 667
NlaIII CATG 4 cut(s) 13, 147, 362, 389
NlaIV GGNNCC 2 cut(s) 6, 772
NsiI ATGCAT 2 cut(s) 387, 451
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 4 cut(s) 27, 33, 241, 440
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 2 cut(s) 92, 458
PleI GAGTC 2 cut(s) 21, 398
PpsI GAGTC 2 cut(s) 21, 398
Psp124BI GAGCTC 2 cut(s) 57, 355
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 6, 772
PspPI GGNCC 1 cut(s) 73
RsaI GTAC 4 cut(s) 263, 338, 392, 559
RsaNI GTAC 4 cut(s) 262, 337, 391, 558
SacI GAGCTC 2 cut(s) 57, 355
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 513, 567
SatI GCNGC 2 cut(s) 91, 457
Sau3AI GATC 3 cut(s) 81, 601, 667
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 2 cut(s) 22, 398
ScrFI CCNGG 2 cut(s) 24, 287
SduI GDGCHC 3 cut(s) 57, 355, 775
SfcI CTRYAG 2 cut(s) 199, 340
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 3 cut(s) 108, 616, 641
SsiI CCGC 2 cut(s) 311, 457
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 2 cut(s) 57, 355
StyD4I CCNGG 2 cut(s) 22, 285
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 299, 746
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 90
TasI AATT 3 cut(s) 108, 616, 641
TatI WGTACW 2 cut(s) 336, 557
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 4 cut(s) 27, 33, 241, 440
Tru1I TTAA 2 cut(s) 513, 567
Tru9I TTAA 2 cut(s) 513, 567
TscAI CASTG 3 cut(s) 297, 336, 782
TseI GCWGC 1 cut(s) 90
TspDTI ATGAA 5 cut(s) 63, 335, 432, 750, 826
TspRI CASTG 3 cut(s) 297, 336, 782
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 1 cut(s) 641
XmiI GTMKAC 2 cut(s) 123, 808
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 2 cut(s) 387, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.