Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013377

Physical Location & Seq

Genomic Coordinates Forward (+)

8405140 .. 8408837

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCACCCATGACTCTTCCTCCTGGATTCAGATTCCACCCAACCGATGAAGAGCTCGTTGCTTACTATCTTGACCGGAAAATCAATGGCCGCACCATCGAGCTTGAAATTATTCCAGAGGTCGACCTCTACAAATGTGAACCGTGGGATTTGCCTGATAAGTCATTTCTGCCGAGCAAGGACATGGAGTGGTATTTCTACAGTCCGAGGGATAGGAAGTACCCAAATGGGTCGAGAACGAATCGGGCAACTCGGGCCGGGTACTGGAAAGCCACCGGAAAAGACCGGGCGGTGAACAGTAACAGGCGTGCGGTTGGGATGAAGAAGACACTGGTGTATTATAAAGGGAGAGCTCCTCATGGCATCAGAACCAACTGGGTTATGCACGAGTACCGGCTCACCGACTCTGTGTGTGGCAGTCCATCATCATCTTTAAAGGATTCATATGCATTGTGCCGCATTTTCAAAAAGACAATCCAAATACCCAAGAATAACAAAGAAGAAAAGACAATTGGGAACACTCTCTTGAACAGAAACATTTTAGGGAAAGACAATAGTACTGGCATTAACAAGGGAGAAGCTTCAAGAGGGATAGAAGCTGATCAAGATTATGAGAATTATTCTAATCCTGATTATCCCAAATTTCTCTCTGATACATCTTCTTCTGATCTCACTCAAGGAACACCAACTGAAACTGGCATAGCAGATGACCTACAAGCTCCATTTGCTTCTGATGAAGCTAACAGTTCAGCTAATCTCTACTCTCTTGGTGCCCACGGCTCCTCAGATAATCTATTTCAGGATACATATATGCCGAATGACACAAGCTTCCAGAATTACCAGTTTCCTTACCCACCTTTAGAACTTGAAGACTTCCCCATGATTAACCTAGCTGTAGAGATGAACACACTGAAGCCCCAAATCATGGACGACTACATCTCATGCGACAAATTGAAGGACTACATGAATGGAACATTGGAAGAGATCTTCTCTTTGTGTTCCTCCCAGGAAAACAACCATGTTGCCCTCCCCATGCAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

348

Amino Acids

39.48

Weight (kDa)

5.16

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	1.2e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54330
fragaria_vesca	FvH4_3g13980
malus_domestica	MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica	Prupe.4G126800_v2.0.a1
pyrus_communis	pycom05g21560 pycom10g18340
rosa_chinensis	RchiOBHm_Chr5g0023211
rosa_laevigata	RLG00000032709
rosa_multiflora	Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056140
rosa_rugosa	Rorug05G0078000
rosa_samantha	Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana	Rw5G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	342
AccB1I	GGYRCC	2 cut(s)	4, 770
AccB7I	CCANNNNNTGG	1 cut(s)	925
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	4 cut(s)	91, 290, 311, 457
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	641
AcuI	CTGAAG	1 cut(s)	932
AfaI	GTAC	4 cut(s)	221, 263, 392, 559
AfiI	CCNNNNNNNGG	2 cut(s)	264, 925
AgsI	TTSAA	6 cut(s)	107, 466, 529, 585, 869, 955
AjnI	CCWGG	2 cut(s)	22, 1005
AjuI	GAANNNNNNNTTGG	4 cut(s)	495, 527, 959, 991
Alw21I	GWGCWC	2 cut(s)	57, 355
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	2 cut(s)	88, 255
ApoI	RAATTY	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	2 cut(s)	259, 287
AsuHPI	GGTGA	2 cut(s)	304, 391
AvaI	CYCGRG	1 cut(s)	252
BaeGI	GKGCMC	1 cut(s)	775
BanI	GGYRCC	2 cut(s)	4, 770
BanII	GRGCYC	2 cut(s)	57, 355
BauI	CACGAG	1 cut(s)	386
BbsI	GAAGAC	2 cut(s)	332, 876
Bbv12I	GWGCWC	2 cut(s)	57, 355
BccI	CCATC	2 cut(s)	104, 430
BceAI	ACGGC	1 cut(s)	793
BciT130I	CCWGG	2 cut(s)	24, 1007
BciVI	GTATCC	1 cut(s)	796
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	2 cut(s)	259, 287
BfaI	CTAG	2 cut(s)	890, 1042
BfmI	CTRYAG	2 cut(s)	199, 894
BfuI	GTATCC	1 cut(s)	796
BglII	AGATCT	1 cut(s)	984
BisI	GCNGC	2 cut(s)	91, 457
BlsI	GCNGC	2 cut(s)	92, 458
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	4 cut(s)	24, 259, 287, 1007
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	3 cut(s)	6, 772, 781
BmrFI	CCNGG	4 cut(s)	24, 259, 287, 1007
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	2 cut(s)	332, 876
BplI	GAGNNNNNCTC	4 cut(s)	340, 372, 974, 1006
BpuEI	CTTGAG	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	259, 287
BsaJI	CCNNGG	4 cut(s)	143, 206, 775, 1005
BsaWI	WCCGGW	2 cut(s)	75, 275
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 925
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	6 cut(s)	269, 336, 380, 565, 700, 841
BseBI	CCWGG	2 cut(s)	24, 1007
BseDI	CCNNGG	4 cut(s)	143, 206, 775, 1005
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	264, 925
BseMII	CTCAG	1 cut(s)	798
BseNI	ACTGG	6 cut(s)	269, 336, 380, 565, 700, 841
BseRI	GAGGAG	2 cut(s)	345, 772
BseSI	GKGCMC	1 cut(s)	775
BshFI	GGCC	2 cut(s)	90, 257
BshNI	GGYRCC	2 cut(s)	4, 770
BsiHKAI	GWGCWC	2 cut(s)	57, 355
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	5 cut(s)	76, 258, 276, 286, 394
BslI	CCNNNNNNNGG	2 cut(s)	264, 925
BsnI	GGCC	2 cut(s)	90, 257
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	3 cut(s)	57, 355, 775
Bsp143I	GATC	3 cut(s)	601, 667, 984
BspACI	CCGC	4 cut(s)	91, 290, 311, 457
BspANI	GGCC	2 cut(s)	90, 257
BspCNI	CTCAG	1 cut(s)	797
BspLI	GGNNCC	3 cut(s)	6, 772, 781
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	2 cut(s)	4, 770
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	6 cut(s)	269, 336, 380, 565, 700, 841
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	4 cut(s)	143, 206, 775, 1005
BssMI	GATC	3 cut(s)	601, 667, 984
BssSI	CACGAG	1 cut(s)	386
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	24, 1007
Bst4CI	ACNGT	4 cut(s)	144, 203, 299, 746
Bst6I	CTCTTC	3 cut(s)	21, 45, 975
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	784
BstDSI	CCRYGG	2 cut(s)	143, 775
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	3 cut(s)	604, 670, 987
BstMBI	GATC	3 cut(s)	601, 667, 984
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 725
BstNI	CCWGG	2 cut(s)	24, 1007
BstSCI	CCNGG	4 cut(s)	22, 257, 285, 1005
BstSFI	CTRYAG	2 cut(s)	199, 894
BstSLI	GKGCMC	1 cut(s)	775
BstV2I	GAAGAC	2 cut(s)	332, 876
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	2 cut(s)	90, 257
BtgI	CCRYGG	2 cut(s)	143, 775
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	329, 908
Cac8I	GCNNGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	255
Csp6I	GTAC	4 cut(s)	220, 262, 391, 558
CviAII	CATG	9 cut(s)	10, 184, 359, 880, 925, 942, 964, 1019, 1033
CviQI	GTAC	4 cut(s)	220, 262, 391, 558
DdeI	CTNAG	1 cut(s)	784
DpnI	GATC	3 cut(s)	603, 669, 986
DpnII	GATC	3 cut(s)	601, 667, 984
DraI	TTTAAA	1 cut(s)	435
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	3 cut(s)	21, 45, 975
EarI	CTCTTC	3 cut(s)	21, 45, 975
Ecl136II	GAGCTC	2 cut(s)	55, 353
Eco24I	GRGCYC	2 cut(s)	57, 355
Eco53kI	GAGCTC	2 cut(s)	55, 353
Eco57I	CTGAAG	1 cut(s)	932
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	2 cut(s)	55, 353
EcoRII	CCWGG	2 cut(s)	22, 1005
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	2 cut(s)	57, 355
FaeI	CATG	9 cut(s)	13, 187, 362, 883, 928, 945, 967, 1022, 1036
FatI	CATG	9 cut(s)	9, 183, 358, 879, 924, 941, 963, 1018, 1032
FauNDI	CATATG	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	91, 457
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	2 cut(s)	57, 355
Fsp4HI	GCNGC	2 cut(s)	91, 457
FspBI	CTAG	2 cut(s)	890, 1042
GluI	GCNGC	2 cut(s)	91, 457
HaeIII	GGCC	2 cut(s)	90, 257
HapII	CCGG	5 cut(s)	76, 258, 276, 286, 394
Hin1II	CATG	9 cut(s)	13, 187, 362, 883, 928, 945, 967, 1022, 1036
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	579, 826
HinfI	GANTC	6 cut(s)	13, 27, 33, 241, 404, 440
HpaII	CCGG	5 cut(s)	76, 258, 276, 286, 394
HphI	GGTGA	2 cut(s)	304, 391
Hpy166II	GTNNAC	3 cut(s)	124, 140, 295
Hpy188I	TCNGA	7 cut(s)	32, 207, 368, 652, 667, 733, 787
Hpy188III	TCNNGA	9 cut(s)	71, 116, 234, 526, 585, 605, 629, 800, 832
Hpy8I	GTNNAC	3 cut(s)	124, 140, 295
HpyAV	CCTTC	1 cut(s)	949
HpyCH4III	ACNGT	4 cut(s)	144, 203, 299, 746
HpyCH4V	TGCA	3 cut(s)	385, 449, 1036
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 725
HpyF3I	CTNAG	1 cut(s)	784
Hsp92II	CATG	9 cut(s)	13, 187, 362, 883, 928, 945, 967, 1022, 1036
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	601, 667, 984
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	358, 724, 785
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	2 cut(s)	890, 1042
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	603, 669, 986
MboI	GATC	3 cut(s)	601, 667, 984
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	984
MhlI	GDGCHC	3 cut(s)	57, 355, 775
MluCI	AATT	6 cut(s)	108, 510, 616, 641, 835, 950
MlyI	GAGTC	2 cut(s)	7, 398
MnlI	CCTC	9 cut(s)	30, 112, 137, 201, 366, 581, 793, 1012, 1037
Mph1103I	ATGCAT	1 cut(s)	451
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	3 cut(s)	434, 567, 885
MspI	CCGG	5 cut(s)	76, 258, 276, 286, 394
MspR9I	CCNGG	4 cut(s)	24, 259, 287, 1007
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	2 cut(s)	24, 1007
MwoI	GCNNNNNNNGC	2 cut(s)	254, 725
NciI	CCSGG	2 cut(s)	259, 287
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	3 cut(s)	601, 667, 984
NlaIII	CATG	9 cut(s)	13, 187, 362, 883, 928, 945, 967, 1022, 1036
NlaIV	GGNNCC	3 cut(s)	6, 772, 781
NmeAIII	GCCGAG	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	4 cut(s)	27, 33, 241, 440
PflMI	CCANNNNNTGG	1 cut(s)	925
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	92, 458
PleI	GAGTC	2 cut(s)	7, 398
PpsI	GAGTC	2 cut(s)	7, 398
PsiI	TTATAA	1 cut(s)	342
Psp124BI	GAGCTC	2 cut(s)	57, 355
Psp6I	CCWGG	2 cut(s)	22, 1005
PspGI	CCWGG	2 cut(s)	22, 1005
PspN4I	GGNNCC	3 cut(s)	6, 772, 781
PspPI	GGNCC	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	984
RsaI	GTAC	4 cut(s)	221, 263, 392, 559
RsaNI	GTAC	4 cut(s)	220, 262, 391, 558
SacI	GAGCTC	2 cut(s)	57, 355
SalI	GTCGAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	434, 567, 885
SatI	GCNGC	2 cut(s)	91, 457
Sau3AI	GATC	3 cut(s)	601, 667, 984
Sau96I	GGNCC	1 cut(s)	255
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	2 cut(s)	7, 398
ScrFI	CCNGG	4 cut(s)	24, 259, 287, 1007
SduI	GDGCHC	3 cut(s)	57, 355, 775
SfaNI	GCATC	1 cut(s)	372
SfcI	CTRYAG	2 cut(s)	199, 894
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	6 cut(s)	108, 510, 616, 641, 835, 950
SsiI	CCGC	4 cut(s)	91, 290, 311, 457
SspMI	CTAG	2 cut(s)	890, 1042
SstI	GAGCTC	2 cut(s)	57, 355
StyD4I	CCNGG	4 cut(s)	22, 257, 285, 1005
TaaI	ACNGT	4 cut(s)	144, 203, 299, 746
TaqI	TCGA	3 cut(s)	99, 123, 233
TasI	AATT	6 cut(s)	108, 510, 616, 641, 835, 950
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	2 cut(s)	93, 459
TfiI	GAWTC	4 cut(s)	27, 33, 241, 440
Tru1I	TTAA	3 cut(s)	434, 567, 885
Tru9I	TTAA	3 cut(s)	434, 567, 885
TscAI	CASTG	2 cut(s)	336, 915
TspDTI	ATGAA	6 cut(s)	63, 335, 432, 750, 917, 980
TspRI	CASTG	2 cut(s)	336, 915
Van91I	CCANNNNNTGG	1 cut(s)	925
XapI	RAATTY	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	2 cut(s)	890, 1042
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.