Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013377

Physical Location & Seq

Genomic Coordinates Forward (+)

6964173 .. 6967801

Gene Structure 3629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCACCCATGAGCCTTCCTCCTGGATTCAGATTTCACCCAACAGATGAAGAACTTGTTGCTTACTATCTAGATAGAAAAATCAATGGCCTCACCATTGAGCTAGAAATAATCCCAGAAGTCGACCTCTACAAATGTGAACCCTGGGATTTGCCAGATAAGTCATTTTTGCCGAGCAAAGACATGGAGTGGTACTTCTACAGCCCAAGGGATAGGAAGTACCCAAACGGGTCAAGAACGAATCGGGCAACTCGAGCTGGGTACTGGAAAGCCACCGGAAAAGACCGGGCGGTGAACAGTCAACGGCGTGCTGTTGGGATGAAGAAGACATTGGTGTATTATAGAGGCAGAGCCCCCCACGGCATTAGAACCAACTGGGTTATGCATGAGTACCGGCTGGTTGACTCTGTGTGTGGCAATGCATCATCATCTCTAAAGGACTCTTACGCATTGTGCCGCGTTTTCAAGAAAACAATACAAATGCCCAAGAACAACAAAGAAGAGAAGCCAATTGGGATTGATAATGCAGAGAATGATTCAGTTTGGGTCTCCAGTAATGAACAGTTATTAATGGAAGACAATAGTGGGATTAATGAGACAGCTTCAAGAGGGATTGAGACTGATCAAGATGAGAATTATTCCAATCATGATTATCCCAAATTTCTCTCTGACACTTCTTCTTCAGATCTCACTCAAGGGACACCAACTGAAAATGGCATGGCAGATGATTTTCAAGCTCCATTTGCCTCTGATGAAGCGAACAGTTCTGCTCATCTCTCTTTTGGTGTTCACTGCTCCTCAAATCTAATTGATCAGGAAACATATATACCACACAATGAAAGCTTATTGAATAACTATCAATTTCCTTACCCACCCTTAGAACTTGAAGACTTCCCGCAGATCAATTTAGCTGCAGAGACGAATGCATCGAAGCCTGAAATCATCGACGACTACATGTCGTATGACAAATTCAAGGATTACATGAATGGAACATTTGAAGAAATCTTCTCTTTATGTTCCTCTCAAGACAACTCTGCTGCCCTCCCCATGCAAGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

354

Amino Acids

40.27

Weight (kDa)

4.76

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54330
fragaria_vesca	FvH4_3g13980
malus_domestica	MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica	Prupe.4G126800_v2.0.a1
pyrus_communis	pycom05g21560 pycom10g18340
rosa_chinensis	RchiOBHm_Chr5g0023211
rosa_laevigata	RLG00000032709
rosa_multiflora	Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056140
rosa_rugosa	Rorug05G0078000
rosa_samantha	Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana	Rw5G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1060
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	459
AciI	CCGC	3 cut(s)	290, 457, 896
AcsI	RAATTY	2 cut(s)	659, 968
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	4 cut(s)	194, 221, 263, 392
AflIII	ACRYGT	1 cut(s)	954
AgsI	TTSAA	7 cut(s)	466, 606, 734, 850, 887, 973, 998
AhdI	GACNNNNNGTC	1 cut(s)	955
AjnI	CCWGG	2 cut(s)	22, 143
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	6 cut(s)	103, 257, 602, 737, 843, 911
AluI	AGCT	6 cut(s)	103, 257, 602, 737, 843, 911
Alw26I	GTCTC	4 cut(s)	553, 590, 611, 911
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	911, 1037
ApoI	RAATTY	2 cut(s)	659, 968
AseI	ATTAAT	2 cut(s)	569, 591
AsuC2I	CCSGG	1 cut(s)	287
AsuHPI	GGTGA	3 cut(s)	29, 85, 304
AvaI	CYCGRG	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	3 cut(s)	332, 582, 894
BbvI	GCAGC	2 cut(s)	898, 1024
BceAI	ACGGC	2 cut(s)	320, 376
BciT130I	CCWGG	2 cut(s)	24, 145
BclI	TGATCA	2 cut(s)	622, 811
BcnI	CCSGG	1 cut(s)	287
BcoDI	GTCTC	4 cut(s)	553, 590, 611, 911
BfaI	CTAG	2 cut(s)	71, 104
BfmI	CTRYAG	2 cut(s)	199, 912
BglII	AGATCT	1 cut(s)	685
BisI	GCNGC	3 cut(s)	457, 912, 1038
BlsI	GCNGC	3 cut(s)	458, 913, 1039
Bme1390I	CCNGG	3 cut(s)	24, 145, 287
BmeRI	GACNNNNNGTC	1 cut(s)	955
BmeT110I	CYCGRG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	24, 145, 287
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	431, 935
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	3 cut(s)	332, 582, 894
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	535
BpuEI	CTTGAG	2 cut(s)	678, 1008
BpuMI	CCSGG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	4 cut(s)	143, 144, 206, 358
BsaWI	WCCGGW	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	393
Bse1I	ACTGG	3 cut(s)	269, 380, 552
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	24, 145
BseDI	CCNNGG	4 cut(s)	143, 144, 206, 358
BseGI	GGATG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	424
BseNI	ACTGG	3 cut(s)	269, 380, 552
BseRI	GAGGAG	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	898, 1024
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	459
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	3 cut(s)	276, 286, 394
BslFI	GGGAC	1 cut(s)	712
BsmAI	GTCTC	4 cut(s)	553, 590, 611, 911
BsmBI	CGTCTC	1 cut(s)	911
BsmFI	GGGAC	1 cut(s)	712
BsmI	GAATGC	1 cut(s)	928
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	553
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	4 cut(s)	622, 685, 811, 900
BspACI	CCGC	3 cut(s)	290, 457, 896
BspANI	GGCC	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	459
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	916
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	553
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	393
BsrI	ACTGG	3 cut(s)	269, 380, 552
BssAI	RCCGGY	1 cut(s)	393
BssECI	CCNNGG	4 cut(s)	143, 144, 206, 358
BssMI	GATC	4 cut(s)	622, 685, 811, 900
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	24, 145
Bst4CI	ACNGT	3 cut(s)	299, 564, 764
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	877
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	459
BstKTI	GATC	4 cut(s)	625, 688, 814, 903
BstMAI	GTCTC	4 cut(s)	553, 590, 611, 911
BstMBI	GATC	4 cut(s)	622, 685, 811, 900
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 743
BstNI	CCWGG	2 cut(s)	24, 145
BstNSI	RCATGY	1 cut(s)	958
BstSCI	CCNGG	3 cut(s)	22, 143, 285
BstSFI	CTRYAG	2 cut(s)	199, 912
BstUI	CGCG	1 cut(s)	459
BstV1I	GCAGC	2 cut(s)	898, 1024
BstV2I	GAAGAC	3 cut(s)	332, 582, 894
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	790
BtsIMutI	CAGTG	1 cut(s)	790
Cac8I	GCNNGC	1 cut(s)	309
CciI	TCATGA	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	393
Csp6I	GTAC	4 cut(s)	193, 220, 262, 391
CviAII	CATG	8 cut(s)	10, 184, 386, 647, 718, 955, 982, 1048
CviQI	GTAC	4 cut(s)	193, 220, 262, 391
DdeI	CTNAG	1 cut(s)	877
DpnI	GATC	4 cut(s)	624, 687, 813, 902
DpnII	GATC	4 cut(s)	622, 685, 811, 900
DriI	GACNNNNNGTC	1 cut(s)	955
Eam1104I	CTCTTC	1 cut(s)	495
Eam1105I	GACNNNNNGTC	1 cut(s)	955
EarI	CTCTTC	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	553
Eco57I	CTGAAG	1 cut(s)	666
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	22, 143
EcoT14I	CCWWGG	1 cut(s)	206
EcoT22I	ATGCAT	3 cut(s)	387, 424, 928
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	911
FaeI	CATG	8 cut(s)	13, 187, 389, 650, 721, 958, 985, 1051
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	8 cut(s)	9, 183, 385, 646, 717, 954, 981, 1047
FauI	CCCGC	1 cut(s)	903
FbaI	TGATCA	2 cut(s)	622, 811
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	457, 912, 1038
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	3 cut(s)	457, 912, 1038
FspBI	CTAG	2 cut(s)	71, 104
GluI	GCNGC	3 cut(s)	457, 912, 1038
GsaI	CCCAGC	1 cut(s)	261
GsuI	CTGGAG	1 cut(s)	535
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	276, 286, 394
Hin1II	CATG	8 cut(s)	13, 187, 389, 650, 721, 958, 985, 1051
HincII	GTYRAC	3 cut(s)	124, 302, 403
HindII	GTYRAC	3 cut(s)	124, 302, 403
HindIII	AAGCTT	1 cut(s)	841
HinfI	GANTC	5 cut(s)	27, 241, 404, 440, 536
HpaII	CCGG	3 cut(s)	276, 286, 394
HphI	GGTGA	3 cut(s)	29, 85, 304
Hpy166II	GTNNAC	6 cut(s)	124, 140, 295, 302, 403, 790
Hpy188I	TCNGA	4 cut(s)	32, 670, 685, 751
Hpy188III	TCNNGA	8 cut(s)	71, 234, 466, 606, 626, 647, 815, 1025
Hpy8I	GTNNAC	6 cut(s)	124, 140, 295, 302, 403, 790
Hpy99I	CGWCG	1 cut(s)	950
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	3 cut(s)	299, 564, 764
HpyCH4V	TGCA	6 cut(s)	385, 422, 527, 914, 926, 1051
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 743
HpyF3I	CTNAG	1 cut(s)	877
Hsp92II	CATG	8 cut(s)	13, 187, 389, 650, 721, 958, 985, 1051
Ksp22I	TGATCA	2 cut(s)	622, 811
Kzo9I	GATC	4 cut(s)	622, 685, 811, 900
LmnI	GCTCC	2 cut(s)	742, 800
Lsp1109I	GCAGC	2 cut(s)	898, 1024
LweI	GCATC	2 cut(s)	431, 935
MaeI	CTAG	2 cut(s)	71, 104
MalI	GATC	4 cut(s)	624, 687, 813, 902
MboI	GATC	4 cut(s)	622, 685, 811, 900
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	8 cut(s)	510, 634, 659, 807, 860, 904, 968, 1055
MlyI	GAGTC	2 cut(s)	398, 434
MnlI	CCTC	9 cut(s)	30, 101, 137, 338, 602, 757, 808, 1030, 1052
Mph1103I	ATGCAT	3 cut(s)	387, 424, 928
MseI	TTAA	2 cut(s)	569, 591
MspI	CCGG	3 cut(s)	276, 286, 394
MspR9I	CCNGG	3 cut(s)	24, 145, 287
MunI	CAATTG	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	928
MvaI	CCWGG	2 cut(s)	24, 145
MvnI	CGCG	1 cut(s)	459
MwoI	GCNNNNNNNGC	2 cut(s)	254, 743
NciI	CCSGG	1 cut(s)	287
NdeII	GATC	4 cut(s)	622, 685, 811, 900
NlaIII	CATG	8 cut(s)	13, 187, 389, 650, 721, 958, 985, 1051
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	198
NsiI	ATGCAT	3 cut(s)	387, 424, 928
NspI	RCATGY	1 cut(s)	958
PaeR7I	CTCGAG	1 cut(s)	252
PagI	TCATGA	1 cut(s)	646
PasI	CCCWGGG	1 cut(s)	144
PciI	ACATGT	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	2 cut(s)	250, 926
PctI	GAATGC	1 cut(s)	928
PfeI	GAWTC	3 cut(s)	27, 241, 536
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	458, 913, 1039
PleI	GAGTC	2 cut(s)	398, 434
PpsI	GAGTC	2 cut(s)	398, 434
PscI	ACATGT	1 cut(s)	954
PshBI	ATTAAT	2 cut(s)	569, 591
PsiI	TTATAA	1 cut(s)	1060
Psp6I	CCWGG	2 cut(s)	22, 143
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	22, 143
PspN4I	GGNNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	252
PstI	CTGCAG	1 cut(s)	916
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	4 cut(s)	194, 221, 263, 392
RsaNI	GTAC	4 cut(s)	193, 220, 262, 391
SalI	GTCGAC	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	569, 591
SatI	GCNGC	3 cut(s)	457, 912, 1038
Sau3AI	GATC	4 cut(s)	622, 685, 811, 900
SchI	GAGTC	2 cut(s)	398, 434
ScrFI	CCNGG	3 cut(s)	24, 145, 287
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	7 cut(s)	105, 129, 259, 604, 739, 845, 913
SfaNI	GCATC	2 cut(s)	431, 935
SfcI	CTRYAG	2 cut(s)	199, 912
Sfr274I	CTCGAG	1 cut(s)	252
SlaI	CTCGAG	1 cut(s)	252
SmlI	CTYRAG	3 cut(s)	252, 693, 1023
SmoI	CTYRAG	3 cut(s)	252, 693, 1023
Sse9I	AATT	8 cut(s)	510, 634, 659, 807, 860, 904, 968, 1055
SsiI	CCGC	3 cut(s)	290, 457, 896
SspMI	CTAG	2 cut(s)	71, 104
StyD4I	CCNGG	3 cut(s)	22, 143, 285
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	299, 564, 764
TaqI	TCGA	4 cut(s)	123, 253, 929, 945
TasI	AATT	8 cut(s)	510, 634, 659, 807, 860, 904, 968, 1055
TauI	GCSGC	1 cut(s)	459
TfiI	GAWTC	3 cut(s)	27, 241, 536
Tru1I	TTAA	2 cut(s)	569, 591
Tru9I	TTAA	2 cut(s)	569, 591
TscAI	CASTG	1 cut(s)	797
TseI	GCWGC	2 cut(s)	911, 1037
TspDTI	ATGAA	6 cut(s)	63, 335, 573, 768, 852, 998
TspRI	CASTG	1 cut(s)	797
VspI	ATTAAT	2 cut(s)	569, 591
XapI	RAATTY	2 cut(s)	659, 968
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	1 cut(s)	958
XhoI	CTCGAG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	2 cut(s)	71, 104
Zsp2I	ATGCAT	3 cut(s)	387, 424, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.