Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0013377

Physical Location & Seq

Genomic Coordinates Reverse (-)

24150555 .. 24152068

Gene Structure 1514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g21560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCAGACAAGGATTCAATCTGGGTCTCCAATGAACAATTGTTTGGGAAAGAAAATAGTGGCATTAATGAGGGAGCTTCAAGAGGGATTGAAACTGATCGAGCATGGGAATTATTCCAACCATGATTATCCCAAATTTCCATCTGACACCTCTTCTTCAGATCTCACTCAAGGCACACCTACTGAAAATGGCATAGCTGATGATTTACAAGCTCCATTTGCTTCTGATGAAGCAAACAGTTCAGCTGATCTATACTCTTTTGGTGTCCACTGCTCCTCAGATCTAATTCAGGAAACGTATATACCACACAATACGAGCGTATTGAATAGCTATCAATTTCCTTACCCACCCTTACAACTTGAAGACTTCCCGCAGATCAATTTAGCTGCAGAGACAAAAACAGCGAAGCCCGAAATCATCGACGAGTACATGTTGTACGACAAGTTCAAGGGTTACATGAATGGAACGTTTGAAGAGATCTTCTCTTTATGTTCCTCTCAAGACAACTCTGTGGCCTTCTCCATGCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

178

Amino Acids

19.77

Weight (kDa)

4.39

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54330
fragaria_vesca	FvH4_3g13980
malus_domestica	MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica	Prupe.4G126800_v2.0.a1
pyrus_communis	pycom05g21560 pycom10g18340
rosa_chinensis	RchiOBHm_Chr5g0023211
rosa_laevigata	RLG00000032709
rosa_multiflora	Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056140
rosa_rugosa	Rorug05G0078000
rosa_samantha	Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana	Rw5G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	371
AclI	AACGTT	1 cut(s)	467
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	428, 437
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	7 cut(s)	17, 80, 91, 325, 362, 448, 473
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	6 cut(s)	76, 197, 212, 245, 330, 386
AluI	AGCT	6 cut(s)	76, 197, 212, 245, 330, 386
Alw26I	GTCTC	2 cut(s)	30, 386
AoxI	GGCC	1 cut(s)	513
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	134
AseI	ATTAAT	1 cut(s)	65
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	1 cut(s)	148
BcoDI	GTCTC	2 cut(s)	30, 386
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	3 cut(s)	160, 280, 477
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BpuEI	CTTGAG	2 cut(s)	153, 483
BsaI	GGTCTC	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	1 cut(s)	515
BsmAI	GTCTC	2 cut(s)	30, 386
BsnI	GGCC	1 cut(s)	515
Bso31I	GGTCTC	1 cut(s)	30
Bsp143I	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	1 cut(s)	290
BspMAI	CTGCAG	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	30
BssMI	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	157, 468
BstDEI	CTNAG	1 cut(s)	277
BstKTI	GATC	6 cut(s)	99, 163, 250, 283, 378, 480
BstMAI	GTCTC	2 cut(s)	30, 386
BstMBI	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstNSI	RCATGY	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	3 cut(s)	160, 280, 477
BstYI	RGATCY	3 cut(s)	160, 280, 477
BsuRI	GGCC	1 cut(s)	515
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Csp6I	GTAC	2 cut(s)	427, 436
CviAII	CATG	5 cut(s)	104, 122, 430, 457, 523
CviJI	RGCY	8 cut(s)	76, 197, 212, 245, 330, 386, 409, 515
CviKI_1	RGCY	8 cut(s)	76, 197, 212, 245, 330, 386, 409, 515
CviQI	GTAC	2 cut(s)	427, 436
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	6 cut(s)	98, 162, 249, 282, 377, 479
DpnII	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
Eam1104I	CTCTTC	2 cut(s)	157, 468
EarI	CTCTTC	2 cut(s)	157, 468
Eco31I	GGTCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	141
FaeI	CATG	5 cut(s)	107, 125, 433, 460, 526
FatI	CATG	5 cut(s)	103, 121, 429, 456, 522
FauI	CCCGC	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	387
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	515
Hin1II	CATG	5 cut(s)	107, 125, 433, 460, 526
HinfI	GANTC	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	4 cut(s)	145, 160, 226, 280
Hpy188III	TCNNGA	3 cut(s)	80, 290, 500
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	2 cut(s)	296, 467
HpyCH4V	TGCA	3 cut(s)	4, 389, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	1 cut(s)	277
HpySE526I	ACGT	2 cut(s)	296, 467
Hsp92II	CATG	5 cut(s)	107, 125, 433, 460, 526
Kzo9I	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
LmnI	GCTCC	3 cut(s)	73, 217, 278
LpnPI	CCDG	2 cut(s)	6, 275
Lsp1109I	GCAGC	1 cut(s)	373
MaeII	ACGT	2 cut(s)	296, 467
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	6 cut(s)	98, 162, 249, 282, 377, 479
MboI	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
MboII	GAAGA	5 cut(s)	144, 147, 374, 472, 485
MfeI	CAATTG	1 cut(s)	37
MflI	RGATCY	3 cut(s)	160, 280, 477
MluCI	AATT	6 cut(s)	37, 109, 134, 285, 335, 379
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	63, 76, 160, 286, 505
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
NlaIII	CATG	5 cut(s)	107, 125, 433, 460, 526
NspI	RCATGY	1 cut(s)	433
PciI	ACATGT	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	388
PscI	ACATGT	1 cut(s)	429
PshBI	ATTAAT	1 cut(s)	65
Psp1406I	AACGTT	1 cut(s)	467
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PstI	CTGCAG	1 cut(s)	391
PsuI	RGATCY	3 cut(s)	160, 280, 477
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	428, 437
RsaNI	GTAC	2 cut(s)	427, 436
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	6 cut(s)	96, 160, 247, 280, 375, 477
SfcI	CTRYAG	1 cut(s)	387
SmlI	CTYRAG	2 cut(s)	168, 498
SmoI	CTYRAG	2 cut(s)	168, 498
Sse9I	AATT	6 cut(s)	37, 109, 134, 285, 335, 379
SsiI	CCGC	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	2 cut(s)	299, 470
TaqI	TCGA	2 cut(s)	99, 420
TasI	AATT	6 cut(s)	37, 109, 134, 285, 335, 379
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	47, 243, 473
TspRI	CASTG	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	65
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.