pycom10g18340
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013377
Physical Location & Seq
Reverse (-)
21634774 .. 21638844
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18340.1

Sequence Viewer

Length: 1047 bp
ATGAGTCTTCCTCCTGGATTCAGATTCCACCCAACGGATGAAGAGCTTGTTGCTTACTATCTAGATCGAAAAATCAATGGTCGCACCATTGAGCTAGAAATTATCCCAGAGGTCGACCTCTACAAATGTGAGCCATGGGATTTACCTGATAAGTCGTTCCTTCCGAGCAAAGACATGGAGTGGTACTTCTATAGCCCGAGGGATAGGAAGTACCCCAACGGGTCGAGAACAAATAGGGCTACTCGAGCTGGGTACTGGAAAGCGACTGGGAAAGACCGGGCGGTGAACAGTCAGAGGCGTGCTGTCGGCATGAAGAAGACATTGGTTTACTATAGAGGTAGAGCCCCCCATGGTATTAGAACCAACTGGGTTATGCATGAGTACCGGCTGGTCAATTCTGTGTGTGGCAATGCGTCATCATCTCTAAAGGATTCTTACGCATTGTGCCGAGTGTTCAAGAAAACAATACAAATGCCCAAGAGTAACAAAGAATACACGCCAATTGGGATTAACAATGCAGGCAATGATTCAATATGGGTCTCCAATGAACAATTGTTAGGGGAAGACACTAGTGGCATTAATGAGGGAGCTTCAAGAGGGATTGAAACTGATCAAGATGAGAATTATTCCAACCATGATTATCCCAAATTTCTATCCGACGCCTCTTCTTCAGATCTCACTCAAGGCACACCTACTGAAACTGGCATAGCTGATGATTTACAAGCTCCATTTGCTTCTGATGAAGCAAACAGTTCAGCTGATCTATACTCTTTTGGTGTCCACTGCTCCTCAGATCTACTTCAGGAGACATATATACCGCCCAATGCGAGCTCACTGAATACCTATCAATTTCCTTACCCACCCTTAGAACTTGAAGACTTCCCGCAGATCAATTTAGCTGCAGAGACAAACACAGCAAAGCCGGAAATCATTGACGAGTACATGTCGTACGACAAGTTCAAGGATTACATGAATGGAACATTTGAAGAGATCTTCTCATTATGTTCATCTCAAGACAACTCTGTGCCCCTCTCCTTGCAAGACTAA

Protein Analysis

349

Amino Acids

39.43

Weight (kDa)

4.83

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 4 - 130 1.6e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54330
fragaria_vesca FvH4_3g13980
malus_domestica MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica Prupe.4G126800_v2.0.a1
pyrus_communis pycom05g21560 pycom10g18340
rosa_chinensis RchiOBHm_Chr5g0023211
rosa_laevigata RLG00000032709
rosa_multiflora Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii Rroxscaffold_1G00056140
rosa_rugosa Rorug05G0078000
rosa_samantha Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana Rw5G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 3 cut(s) 281, 818, 884
AcsI RAATTY 1 cut(s) 647
AcuI CTGAAG 2 cut(s) 654, 785
AcyI GRCGYC 1 cut(s) 660
AfaI GTAC 6 cut(s) 185, 212, 254, 383, 941, 950
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 942
AgsI TTSAA 7 cut(s) 457, 531, 594, 605, 875, 961, 986
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 305, 337
AluBI AGCT 9 cut(s) 46, 94, 248, 590, 710, 725, 758, 831, 899
AluI AGCT 9 cut(s) 46, 94, 248, 590, 710, 725, 758, 831, 899
Alw21I GWGCWC 1 cut(s) 833
Alw26I GTCTC 3 cut(s) 544, 800, 899
Ama87I CYCGRG 2 cut(s) 196, 243
ApeKI GCWGC 1 cut(s) 899
ApoI RAATTY 1 cut(s) 647
AseI ATTAAT 1 cut(s) 579
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 295
AvaI CYCGRG 2 cut(s) 196, 243
BaeGI GKGCMC 1 cut(s) 1029
BanII GRGCYC 2 cut(s) 346, 833
BbsI GAAGAC 3 cut(s) 323, 570, 882
Bbv12I GWGCWC 1 cut(s) 833
BbvI GCAGC 1 cut(s) 886
BciT130I CCWGG 1 cut(s) 15
BclI TGATCA 1 cut(s) 610
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 544, 800, 899
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 3 cut(s) 62, 95, 570
BfmI CTRYAG 3 cut(s) 190, 331, 900
BglII AGATCT 3 cut(s) 673, 793, 990
BisI GCNGC 1 cut(s) 900
BlsI GCNGC 1 cut(s) 901
Bme1390I CCNGG 2 cut(s) 15, 278
BmeT110I CYCGRG 2 cut(s) 196, 243
BmrFI CCNGG 2 cut(s) 15, 278
BmrI ACTGGG 2 cut(s) 276, 376
BmuI ACTGGG 2 cut(s) 276, 376
BpiI GAAGAC 3 cut(s) 323, 570, 882
BplI GAGNNNNNCTC 3 cut(s) 27, 980, 1012
BpuEI CTTGAG 2 cut(s) 666, 996
BpuMI CCSGG 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 660
BsaI GGTCTC 1 cut(s) 544
BsaJI CCNNGG 3 cut(s) 134, 197, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 4 cut(s) 260, 271, 371, 706
Bse3DI GCAATG 2 cut(s) 415, 529
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 3 cut(s) 134, 197, 349
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 2 cut(s) 415, 529
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 4 cut(s) 260, 271, 371, 706
BseRI GAGGAG 1 cut(s) 778
BseSI GKGCMC 1 cut(s) 1029
BseXI GCAGC 1 cut(s) 886
BseYI CCCAGC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 833
BsiHKCI CYCGRG 2 cut(s) 196, 243
BsiSI CCGG 3 cut(s) 277, 385, 923
BsiWI CGTACG 1 cut(s) 948
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 3 cut(s) 544, 800, 899
Bso31I GGTCTC 1 cut(s) 544
BsoBI CYCGRG 2 cut(s) 196, 243
Bsp1286I GDGCHC 3 cut(s) 346, 833, 1029
Bsp143I GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
Bsp19I CCATGG 2 cut(s) 134, 349
BspACI CCGC 3 cut(s) 281, 818, 884
BspCNI CTCAG 1 cut(s) 803
BspMAI CTGCAG 1 cut(s) 904
BspQI GCTCTTC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 544
BsrDI GCAATG 2 cut(s) 415, 529
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 4 cut(s) 260, 271, 371, 706
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 3 cut(s) 134, 197, 349
BssMI GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
BssNI GRCGYC 1 cut(s) 660
BssT1I CCWWGG 2 cut(s) 134, 349
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 2 cut(s) 290, 752
Bst6I CTCTTC 3 cut(s) 36, 670, 981
BstACI GRCGYC 1 cut(s) 660
BstC8I GCNNGC 3 cut(s) 300, 520, 829
BstDEI CTNAG 2 cut(s) 790, 865
BstDSI CCRYGG 2 cut(s) 134, 349
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 7 cut(s) 67, 613, 676, 763, 796, 891, 993
BstMAI GTCTC 3 cut(s) 544, 800, 899
BstMBI GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
BstMWI GCNNNNNNNGC 2 cut(s) 245, 731
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 946
BstSCI CCNGG 2 cut(s) 13, 276
BstSFI CTRYAG 3 cut(s) 190, 331, 900
BstSLI GKGCMC 1 cut(s) 1029
BstV1I GCAGC 1 cut(s) 886
BstV2I GAAGAC 3 cut(s) 323, 570, 882
BstX2I RGATCY 3 cut(s) 673, 793, 990
BstYI RGATCY 3 cut(s) 673, 793, 990
BtgI CCRYGG 2 cut(s) 134, 349
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 781, 833
Cac8I GCNNGC 3 cut(s) 300, 520, 829
Cfr10I RCCGGY 1 cut(s) 384
CseI GACGC 2 cut(s) 402, 668
Csp6I GTAC 6 cut(s) 184, 211, 253, 382, 940, 949
CviAII CATG 8 cut(s) 135, 175, 310, 350, 377, 635, 943, 970
CviQI GTAC 6 cut(s) 184, 211, 253, 382, 940, 949
DdeI CTNAG 2 cut(s) 790, 865
DpnI GATC 7 cut(s) 66, 612, 675, 762, 795, 890, 992
DpnII GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
Eam1104I CTCTTC 3 cut(s) 36, 670, 981
EarI CTCTTC 3 cut(s) 36, 670, 981
Ecl136II GAGCTC 1 cut(s) 831
Eco130I CCWWGG 2 cut(s) 134, 349
Eco24I GRGCYC 2 cut(s) 346, 833
Eco31I GGTCTC 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 831
Eco57I CTGAAG 2 cut(s) 654, 785
Eco88I CYCGRG 2 cut(s) 196, 243
EcoICRI GAGCTC 1 cut(s) 831
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 2 cut(s) 134, 349
EcoT22I ATGCAT 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 346, 833
ErhI CCWWGG 2 cut(s) 134, 349
FaeI CATG 8 cut(s) 138, 178, 313, 353, 380, 638, 946, 973
FatI CATG 8 cut(s) 134, 174, 309, 349, 376, 634, 942, 969
FauI CCCGC 1 cut(s) 891
FbaI TGATCA 1 cut(s) 610
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 900
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 2 cut(s) 346, 833
Fsp4HI GCNGC 1 cut(s) 900
FspBI CTAG 3 cut(s) 62, 95, 570
GluI GCNGC 1 cut(s) 900
GsaI CCCAGC 1 cut(s) 252
HapII CCGG 3 cut(s) 277, 385, 923
HgaI GACGC 2 cut(s) 402, 668
Hin1I GRCGYC 1 cut(s) 660
Hin1II CATG 8 cut(s) 138, 178, 313, 353, 380, 638, 946, 973
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 5 cut(s) 4, 18, 24, 431, 527
HpaII CCGG 3 cut(s) 277, 385, 923
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 4 cut(s) 115, 286, 328, 781
Hpy188I TCNGA 7 cut(s) 23, 165, 294, 658, 673, 739, 793
Hpy188III TCNNGA 7 cut(s) 62, 225, 457, 594, 614, 803, 1013
Hpy8I GTNNAC 4 cut(s) 115, 286, 328, 781
Hpy99I CGWCG 1 cut(s) 662
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 290, 752
HpyCH4V TGCA 4 cut(s) 376, 518, 902, 1039
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 731
HpyF3I CTNAG 2 cut(s) 790, 865
Hsp92I GRCGYC 1 cut(s) 660
Hsp92II CATG 8 cut(s) 138, 178, 313, 353, 380, 638, 946, 973
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 587, 730, 791
Lsp1109I GCAGC 1 cut(s) 886
MaeI CTAG 3 cut(s) 62, 95, 570
MaeIII GTNAC 1 cut(s) 482
MalI GATC 7 cut(s) 66, 612, 675, 762, 795, 890, 992
MboI GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
MboII GAAGA 9 cut(s) 53, 325, 328, 575, 657, 660, 887, 985, 998
MfeI CAATTG 2 cut(s) 501, 551
MflI RGATCY 3 cut(s) 673, 793, 990
MhlI GDGCHC 3 cut(s) 346, 833, 1029
MluCI AATT 8 cut(s) 99, 394, 501, 551, 622, 647, 848, 892
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 654, 681
Mph1103I ATGCAT 1 cut(s) 378
MseI TTAA 2 cut(s) 510, 579
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 3 cut(s) 277, 385, 923
MspR9I CCNGG 2 cut(s) 15, 278
MunI CAATTG 2 cut(s) 501, 551
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 245, 731
NciI CCSGG 1 cut(s) 278
NcoI CCATGG 2 cut(s) 134, 349
NdeII GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
NlaIII CATG 8 cut(s) 138, 178, 313, 353, 380, 638, 946, 973
NmeAIII GCCGAG 1 cut(s) 473
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 946
PaeR7I CTCGAG 1 cut(s) 243
PciI ACATGT 1 cut(s) 942
PciSI GCTCTTC 1 cut(s) 36
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfeI GAWTC 4 cut(s) 18, 24, 431, 527
Pfl23II CGTACG 1 cut(s) 948
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 1 cut(s) 901
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PscI ACATGT 1 cut(s) 942
PshBI ATTAAT 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 13
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 13
PspLI CGTACG 1 cut(s) 948
PspXI VCTCGAGB 1 cut(s) 243
PsrI GAACNNNNNNTAC 2 cut(s) 941, 973
PstI CTGCAG 1 cut(s) 904
PsuI RGATCY 3 cut(s) 673, 793, 990
PvuII CAGCTG 1 cut(s) 758
RsaI GTAC 6 cut(s) 185, 212, 254, 383, 941, 950
RsaNI GTAC 6 cut(s) 184, 211, 253, 382, 940, 949
SacI GAGCTC 1 cut(s) 833
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 2 cut(s) 510, 579
SatI GCNGC 1 cut(s) 900
Sau3AI GATC 7 cut(s) 64, 610, 673, 760, 793, 888, 990
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 15, 278
SduI GDGCHC 3 cut(s) 346, 833, 1029
SfcI CTRYAG 3 cut(s) 190, 331, 900
Sfr274I CTCGAG 1 cut(s) 243
SlaI CTCGAG 1 cut(s) 243
SmlI CTYRAG 3 cut(s) 243, 681, 1011
SmoI CTYRAG 3 cut(s) 243, 681, 1011
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 8 cut(s) 99, 394, 501, 551, 622, 647, 848, 892
SsiI CCGC 3 cut(s) 281, 818, 884
SspMI CTAG 3 cut(s) 62, 95, 570
SstI GAGCTC 1 cut(s) 833
StyD4I CCNGG 2 cut(s) 13, 276
StyI CCWWGG 2 cut(s) 134, 349
TaaI ACNGT 2 cut(s) 290, 752
TaqI TCGA 4 cut(s) 67, 114, 224, 244
TasI AATT 8 cut(s) 99, 394, 501, 551, 622, 647, 848, 892
TatI WGTACW 1 cut(s) 939
TfiI GAWTC 4 cut(s) 18, 24, 431, 527
Tru1I TTAA 2 cut(s) 510, 579
Tru9I TTAA 2 cut(s) 510, 579
TscAI CASTG 2 cut(s) 788, 840
TseI GCWGC 1 cut(s) 899
TspDTI ATGAA 6 cut(s) 54, 326, 561, 756, 986, 996
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 2 cut(s) 788, 840
VspI ATTAAT 1 cut(s) 579
XapI RAATTY 1 cut(s) 647
XbaI TCTAGA 1 cut(s) 61
XceI RCATGY 1 cut(s) 946
XhoI CTCGAG 1 cut(s) 243
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 3 cut(s) 62, 95, 570
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.