Rh5DG165400
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0013377
Physical Location & Seq
Forward (+)
17259513 .. 17263340
3828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG165400.1

Sequence Viewer

Length: 1044 bp
ATGGCACCCATGAGTCTTCCTCCTGGATTCAGATTCCACCCAACTGATGAAGAGCTCGTTGCTTACTATCTGGACCGAAAGATCAATGGCTGCACCATTGAGCTTGAAATTATTCCAGAGGTCGACCTCTACAAATGTGAACCATGGGATTTGCCTGATAAGTCATTCTTGCCTAGCAAGGATATGGAGTGGTATTTCTACAGCCCGAGGGATAGGAAATACCCGAATGGGTCAAGAACGAATCGGGCTACTCGGGCAGGGTACTGGAAAGCCACCGGAAAAGACCGGGCAGTGAACAGTAACAGGCGTGCGGTTGGGATGAAGAAGACACTGGTGTACTATAGAGGGAGAGCTCCTCATGGCATTAGAACCAACTGGGTTATGCATGAGTACCGGCTCACCGACTCGGTGTGTGGCAGTCCCTCATCATCTCTAAAGGATTCATATGCATTGTGCCGCATTTTCAAAAAGACAATCCAAATACCCAAGAATAACAAAGAAGAAAAGACGATTAAAAACACTCTCTTGAACGAAAAAAAATCAAGGGAAGACACCAGTACTGGCATTAACGAGGGAGAAGCTTCAAGAGGGATAGAAACAGATCAAGATTATGAGAATTATTCTAATCCTGATTATTCCAAATTTCTCTCTGATACCTCTTCTTCTGATCTCACTCAAGGGACACCTACTGAAACTGGCATAGCAGATGATTTACAAGCTCCATTTGCTTCTGATGAAGCTAACAGTTCAGCTAATCTCTACTCTCTTGGTGCCCACTGCTCCTCAAATAATCTATTTCAGGATACATATATGCCGAGCGATACAAGCTTCGAGAATTACCAATTTCCTTACCCACCTTTGGAGCTTGAAGACTTCCCGATGATTAACTTAGCTGCAGAGACAAACACATCAAAGCCCCAAATCATCGATGATTACATGTCATGCGACAGATTGAAGGACTACATGAATGGAACATTGGAAGAGATCTTCTCTTTGTGTTCCTCTCAAGACAACAACCACGCTGCCCGCCCCATGCAAGACTAA

Protein Analysis

347

Amino Acids

39.56

Weight (kDa)

5.05

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 133 2.5e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54330
fragaria_vesca FvH4_3g13980
malus_domestica MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica Prupe.4G126800_v2.0.a1
pyrus_communis pycom05g21560 pycom10g18340
rosa_chinensis RchiOBHm_Chr5g0023211
rosa_laevigata RLG00000032709
rosa_multiflora Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii Rroxscaffold_1G00056140
rosa_rugosa Rorug05G0078000
rosa_samantha Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana Rw5G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 770
AccI GTMKAC 1 cut(s) 123
AciI CCGC 3 cut(s) 311, 457, 1027
AcsI RAATTY 1 cut(s) 641
AfaI GTAC 4 cut(s) 263, 338, 392, 559
AfiI CCNNNNNNNGG 1 cut(s) 859
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 6 cut(s) 107, 466, 529, 585, 869, 955
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 959, 991
Alw21I GWGCWC 2 cut(s) 57, 355
Alw26I GTCTC 1 cut(s) 893
Ama87I CYCGRG 2 cut(s) 205, 252
ApeKI GCWGC 3 cut(s) 90, 893, 1022
ApoI RAATTY 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 2 cut(s) 205, 252
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 775
BanI GGYRCC 2 cut(s) 4, 770
BanII GRGCYC 2 cut(s) 57, 355
BbsI GAAGAC 4 cut(s) 8, 332, 555, 876
Bbv12I GWGCWC 2 cut(s) 57, 355
BbvI GCAGC 3 cut(s) 77, 880, 1009
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 796
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 3 cut(s) 199, 340, 894
BfuI GTATCC 1 cut(s) 796
BglII AGATCT 1 cut(s) 984
BisI GCNGC 4 cut(s) 91, 457, 894, 1023
BlsI GCNGC 4 cut(s) 92, 458, 895, 1024
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 2 cut(s) 24, 287
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 2 cut(s) 205, 252
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 6, 772
BmrFI CCNGG 2 cut(s) 24, 287
BmrI ACTGGG 1 cut(s) 385
BmuI ACTGGG 1 cut(s) 385
BpiI GAAGAC 4 cut(s) 8, 332, 555, 876
BplI GAGNNNNNCTC 5 cut(s) 36, 340, 372, 974, 1006
BpuEI CTTGAG 2 cut(s) 660, 990
BpuMI CCSGG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 927
BsaJI CCNNGG 2 cut(s) 143, 206
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 859
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 927
BseDI CCNNGG 2 cut(s) 143, 206
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 859
BseNI ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BseRI GAGGAG 2 cut(s) 345, 772
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 3 cut(s) 77, 880, 1009
BsgI GTGCAG 1 cut(s) 76
BshNI GGYRCC 2 cut(s) 4, 770
BshVI ATCGAT 1 cut(s) 927
BsiHKAI GWGCWC 2 cut(s) 57, 355
BsiHKCI CYCGRG 2 cut(s) 205, 252
BsiSI CCGG 3 cut(s) 276, 286, 394
BslFI GGGAC 2 cut(s) 405, 694
BslI CCNNNNNNNGG 1 cut(s) 859
BsmAI GTCTC 1 cut(s) 893
BsmFI GGGAC 2 cut(s) 405, 694
BsoBI CYCGRG 2 cut(s) 205, 252
Bsp1286I GDGCHC 3 cut(s) 57, 355, 775
Bsp143I GATC 4 cut(s) 81, 601, 667, 984
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 3 cut(s) 311, 457, 1027
BspDI ATCGAT 1 cut(s) 927
BspLI GGNNCC 2 cut(s) 6, 772
BspMAI CTGCAG 1 cut(s) 898
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 2 cut(s) 4, 770
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 143, 206
BssMI GATC 4 cut(s) 81, 601, 667, 984
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 299, 746
Bst6I CTCTTC 3 cut(s) 45, 664, 975
BstC8I GCNNGC 2 cut(s) 309, 1027
BstDEI CTNAG 1 cut(s) 889
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 4 cut(s) 84, 604, 670, 987
BstMAI GTCTC 1 cut(s) 893
BstMBI GATC 4 cut(s) 81, 601, 667, 984
BstMWI GCNNNNNNNGC 3 cut(s) 254, 725, 825
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 2 cut(s) 22, 285
BstSFI CTRYAG 3 cut(s) 199, 340, 894
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 3 cut(s) 77, 880, 1009
BstV2I GAAGAC 4 cut(s) 8, 332, 555, 876
BstX2I RGATCY 1 cut(s) 984
BstYI RGATCY 1 cut(s) 984
Bsu15I ATCGAT 1 cut(s) 927
BsuI GTATCC 1 cut(s) 796
BsuTUI ATCGAT 1 cut(s) 927
BtgI CCRYGG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 2 cut(s) 297, 775
BtsIMutI CAGTG 3 cut(s) 297, 329, 775
Cac8I GCNNGC 2 cut(s) 309, 1027
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 927
Csp6I GTAC 4 cut(s) 262, 337, 391, 558
CviAII CATG 8 cut(s) 10, 144, 359, 386, 937, 942, 964, 1033
CviQI GTAC 4 cut(s) 262, 337, 391, 558
DdeI CTNAG 1 cut(s) 889
DpnI GATC 4 cut(s) 83, 603, 669, 986
DpnII GATC 4 cut(s) 81, 601, 667, 984
Eam1104I CTCTTC 3 cut(s) 45, 664, 975
EarI CTCTTC 3 cut(s) 45, 664, 975
Ecl136II GAGCTC 2 cut(s) 55, 353
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 2 cut(s) 57, 355
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 2 cut(s) 55, 353
Eco88I CYCGRG 2 cut(s) 205, 252
EcoICRI GAGCTC 2 cut(s) 55, 353
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 2 cut(s) 387, 451
EcoT38I GRGCYC 2 cut(s) 57, 355
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 8 cut(s) 13, 147, 362, 389, 940, 945, 967, 1036
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 2 cut(s) 405, 694
FatI CATG 8 cut(s) 9, 143, 358, 385, 936, 941, 963, 1032
FauI CCCGC 1 cut(s) 1034
FauNDI CATATG 1 cut(s) 445
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 4 cut(s) 91, 457, 894, 1023
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 2 cut(s) 57, 355
Fsp4HI GCNGC 4 cut(s) 91, 457, 894, 1023
FspBI CTAG 1 cut(s) 174
GluI GCNGC 4 cut(s) 91, 457, 894, 1023
HapII CCGG 3 cut(s) 276, 286, 394
Hin1II CATG 8 cut(s) 13, 147, 362, 389, 940, 945, 967, 1036
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 579, 826
HinfI GANTC 6 cut(s) 13, 27, 33, 241, 404, 440
HpaII CCGG 3 cut(s) 276, 286, 394
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 4 cut(s) 124, 140, 295, 337
Hpy188I TCNGA 4 cut(s) 32, 652, 667, 733
Hpy8I GTNNAC 4 cut(s) 124, 140, 295, 337
HpyAV CCTTC 1 cut(s) 949
HpyCH4III ACNGT 2 cut(s) 299, 746
HpyCH4V TGCA 5 cut(s) 93, 385, 449, 896, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 725, 825
HpyF3I CTNAG 1 cut(s) 889
Hsp92II CATG 8 cut(s) 13, 147, 362, 389, 940, 945, 967, 1036
Kzo9I GATC 4 cut(s) 81, 601, 667, 984
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 358, 724, 785, 862
Lsp1109I GCAGC 3 cut(s) 77, 880, 1009
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 299
MalI GATC 4 cut(s) 83, 603, 669, 986
MboI GATC 4 cut(s) 81, 601, 667, 984
MflI RGATCY 1 cut(s) 984
MhlI GDGCHC 3 cut(s) 57, 355, 775
MluCI AATT 5 cut(s) 108, 616, 641, 835, 842
MlyI GAGTC 2 cut(s) 22, 398
Mph1103I ATGCAT 2 cut(s) 387, 451
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 3 cut(s) 513, 567, 885
MspI CCGG 3 cut(s) 276, 286, 394
MspR9I CCNGG 2 cut(s) 24, 287
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 254, 725, 825
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 445
NdeII GATC 4 cut(s) 81, 601, 667, 984
NlaIII CATG 8 cut(s) 13, 147, 362, 389, 940, 945, 967, 1036
NlaIV GGNNCC 2 cut(s) 6, 772
NmeAIII GCCGAG 1 cut(s) 840
NsiI ATGCAT 2 cut(s) 387, 451
NspI RCATGY 1 cut(s) 940
PciI ACATGT 1 cut(s) 936
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 4 cut(s) 27, 33, 241, 440
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 4 cut(s) 92, 458, 895, 1024
PleI GAGTC 2 cut(s) 21, 398
PpsI GAGTC 2 cut(s) 21, 398
PscI ACATGT 1 cut(s) 936
Psp124BI GAGCTC 2 cut(s) 57, 355
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 6, 772
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 898
PsuI RGATCY 1 cut(s) 984
RsaI GTAC 4 cut(s) 263, 338, 392, 559
RsaNI GTAC 4 cut(s) 262, 337, 391, 558
SacI GAGCTC 2 cut(s) 57, 355
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 3 cut(s) 513, 567, 885
SatI GCNGC 4 cut(s) 91, 457, 894, 1023
Sau3AI GATC 4 cut(s) 81, 601, 667, 984
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 2 cut(s) 22, 398
ScrFI CCNGG 2 cut(s) 24, 287
SduI GDGCHC 3 cut(s) 57, 355, 775
SfcI CTRYAG 3 cut(s) 199, 340, 894
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 2 cut(s) 675, 1005
SmoI CTYRAG 2 cut(s) 675, 1005
Sse9I AATT 5 cut(s) 108, 616, 641, 835, 842
SsiI CCGC 3 cut(s) 311, 457, 1027
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 2 cut(s) 57, 355
StyD4I CCNGG 2 cut(s) 22, 285
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 299, 746
TaqI TCGA 3 cut(s) 123, 831, 927
TaqII GACCGA 1 cut(s) 90
TasI AATT 5 cut(s) 108, 616, 641, 835, 842
TatI WGTACW 2 cut(s) 336, 557
TauI GCSGC 1 cut(s) 459
TfiI GAWTC 4 cut(s) 27, 33, 241, 440
Tru1I TTAA 3 cut(s) 513, 567, 885
Tru9I TTAA 3 cut(s) 513, 567, 885
TscAI CASTG 3 cut(s) 297, 336, 782
TseI GCWGC 3 cut(s) 90, 893, 1022
TspDTI ATGAA 5 cut(s) 63, 335, 432, 750, 980
TspRI CASTG 3 cut(s) 297, 336, 782
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 940
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 2 cut(s) 387, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.