Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013377

Physical Location & Seq

Genomic Coordinates Forward (+)

17056467 .. 17059953

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG163600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCACCCATGAGTCTTCCTCCTGGATTCAGATTCCACCCAACTGATGAAGAGCTCGTTGCTTACTATCTGGACCGAAAGATCAATGGCCGCACCATTGAGCTTGAAATTATTCCAGAGGTCGACCTCTACAAATGTGAACCATGGGATTTGCCTGATAAGTCATTCTTGCCTAGCAAGGATATGGAGTGGTATTTCTACAGCCCGAGGGATAGGAAATACCCGAATGGGTCAAGAACGAATCGGGCTACTCGGGCAGGGTACTGGAAAGCCACCGGAAAAGACCGGTCAGTGAACAGTAACAGGCGTGCGGTTGGGATGAAGAAGACACTAGTGTACTATAGAGGGAGAGCTCCTCATGGCATTAGAACCAACTGGGTTATGCATGAGTACCGGCTCACCGACTCGGTGTGTGGCAGTCCATCATCATCTCTAAAGGATTCATATGCATTGTGCCGCATTTTCAAAAAGACAATCCAAATACCCAAGAATAACATAGAAGAAAAGACGATTAAAAACACTCTCTTGAACGACAAAAAATTAGGGGAAGACACCAGTACTGGCATTAACGAGGGAGAAGCTTCAAGAGGGATAGAAACAGATCAAGATTATGAGAATTATTCTAATCCTGATTATCCCAAATTTCTCTCTGATACCTCTTCTTCTGATCTCACTCAAGGGACACCTACTGAAACTGGCATAGCAGATGATTTACAAGCTCCATTTGCTTCTGATGAAGCTAACAGTTCAGCTAATCTCTACTCTCTTGGCGCCCACTGCTCCTCAAATAATCTATTTCAGGATACATATATGCCTAGCGATACAAGCTTCGAGAATTACCAATTTCCTTACCCACCTTTGGAACTTGAAGACTTCCCGATGATTAACTTAGCTGCTGAGACAAACACATCGAAGCCCCAAATCATCGATGATTACATGTCATGCGACAGATTGAAGGACTACATGAATGGAACATTGGAAGAGATCTTCTCTTTGTGTTCCTCTCAAGACAACAACCATGTTGCCCTCCCCATGCAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

347

Amino Acids

39.52

Weight (kDa)

4.93

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	7 - 133	1.5e-50	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54330
fragaria_vesca	FvH4_3g13980
malus_domestica	MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica	Prupe.4G126800_v2.0.a1
pyrus_communis	pycom05g21560 pycom10g18340
rosa_chinensis	RchiOBHm_Chr5g0023211
rosa_laevigata	RLG00000032709
rosa_multiflora	Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056140
rosa_rugosa	Rorug05G0078000
rosa_samantha	Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana	Rw5G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 770
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	3 cut(s)	91, 311, 457
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	641
AcyI	GRCGYC	1 cut(s)	771
AfaI	GTAC	4 cut(s)	263, 338, 392, 559
AfiI	CCNNNNNNNGG	1 cut(s)	859
AflIII	ACRYGT	1 cut(s)	936
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	6 cut(s)	107, 466, 529, 585, 869, 955
AhlI	ACTAGT	1 cut(s)	331
AjnI	CCWGG	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AluBI	AGCT	9 cut(s)	55, 103, 353, 581, 719, 740, 752, 828, 893
AluI	AGCT	9 cut(s)	55, 103, 353, 581, 719, 740, 752, 828, 893
Alw21I	GWGCWC	2 cut(s)	57, 355
Alw26I	GTCTC	1 cut(s)	893
Ama87I	CYCGRG	2 cut(s)	205, 252
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	893
ApoI	RAATTY	1 cut(s)	641
AsiGI	ACCGGT	1 cut(s)	285
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	773
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	391
AvaI	CYCGRG	2 cut(s)	205, 252
AvaII	GGWCC	1 cut(s)	73
BanI	GGYRCC	2 cut(s)	4, 770
BanII	GRGCYC	2 cut(s)	57, 355
BbsI	GAAGAC	4 cut(s)	8, 332, 555, 876
Bbv12I	GWGCWC	2 cut(s)	57, 355
BbvI	GCAGC	1 cut(s)	880
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	893
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	3 cut(s)	174, 332, 816
BfmI	CTRYAG	2 cut(s)	199, 340
BfoI	RGCGCY	1 cut(s)	774
BfuI	GTATCC	1 cut(s)	796
BglII	AGATCT	1 cut(s)	984
BisI	GCNGC	3 cut(s)	91, 457, 894
BlsI	GCNGC	3 cut(s)	92, 458, 895
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	73
BmeT110I	CYCGRG	2 cut(s)	205, 252
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	2 cut(s)	6, 772
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	385
BmuI	ACTGGG	1 cut(s)	385
BpiI	GAAGAC	4 cut(s)	8, 332, 555, 876
BplI	GAGNNNNNCTC	5 cut(s)	36, 340, 372, 974, 1006
BpuEI	CTTGAG	2 cut(s)	660, 990
Bsa29I	ATCGAT	1 cut(s)	927
BsaHI	GRCGYC	1 cut(s)	771
BsaJI	CCNNGG	2 cut(s)	143, 206
BsaWI	WCCGGW	2 cut(s)	275, 285
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse118I	RCCGGY	2 cut(s)	285, 393
Bse1I	ACTGG	5 cut(s)	269, 380, 555, 565, 700
BseBI	CCWGG	1 cut(s)	24
BseCI	ATCGAT	1 cut(s)	927
BseDI	CCNNGG	2 cut(s)	143, 206
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMII	CTCAG	1 cut(s)	888
BseNI	ACTGG	5 cut(s)	269, 380, 555, 565, 700
BseRI	GAGGAG	2 cut(s)	345, 772
BseXI	GCAGC	1 cut(s)	880
BshFI	GGCC	1 cut(s)	90
BshNI	GGYRCC	2 cut(s)	4, 770
BshTI	ACCGGT	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	927
BsiHKAI	GWGCWC	2 cut(s)	57, 355
BsiHKCI	CYCGRG	2 cut(s)	205, 252
BsiSI	CCGG	3 cut(s)	276, 286, 394
BslFI	GGGAC	1 cut(s)	694
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	1 cut(s)	893
BsmFI	GGGAC	1 cut(s)	694
BsnI	GGCC	1 cut(s)	90
BsoBI	CYCGRG	2 cut(s)	205, 252
Bsp1286I	GDGCHC	2 cut(s)	57, 355
Bsp143I	GATC	4 cut(s)	81, 601, 667, 984
Bsp19I	CCATGG	1 cut(s)	143
BspACI	CCGC	3 cut(s)	91, 311, 457
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	889
BspDI	ATCGAT	1 cut(s)	927
BspLI	GGNNCC	2 cut(s)	6, 772
BspQI	GCTCTTC	1 cut(s)	45
BspT107I	GGYRCC	2 cut(s)	4, 770
BsrFI	RCCGGY	2 cut(s)	285, 393
BsrI	ACTGG	5 cut(s)	269, 380, 555, 565, 700
BssAI	RCCGGY	2 cut(s)	285, 393
BssECI	CCNNGG	2 cut(s)	143, 206
BssMI	GATC	4 cut(s)	81, 601, 667, 984
BssNI	GRCGYC	1 cut(s)	771
BssT1I	CCWWGG	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	299, 746
Bst6I	CTCTTC	3 cut(s)	45, 664, 975
BstACI	GRCGYC	1 cut(s)	771
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	2 cut(s)	889, 897
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	324
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	773
BstKTI	GATC	4 cut(s)	84, 604, 670, 987
BstMAI	GTCTC	1 cut(s)	893
BstMBI	GATC	4 cut(s)	81, 601, 667, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	254, 725, 777, 825
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	1 cut(s)	940
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	2 cut(s)	199, 340
BstV1I	GCAGC	1 cut(s)	880
BstV2I	GAAGAC	4 cut(s)	8, 332, 555, 876
BstX2I	RGATCY	1 cut(s)	984
BstYI	RGATCY	1 cut(s)	984
Bsu15I	ATCGAT	1 cut(s)	927
BsuI	GTATCC	1 cut(s)	796
BsuRI	GGCC	1 cut(s)	90
BsuTUI	ATCGAT	1 cut(s)	927
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	2 cut(s)	297, 775
Cac8I	GCNNGC	1 cut(s)	309
CfoI	GCGC	1 cut(s)	773
Cfr10I	RCCGGY	2 cut(s)	285, 393
Cfr13I	GGNCC	1 cut(s)	73
ClaI	ATCGAT	1 cut(s)	927
Csp6I	GTAC	4 cut(s)	262, 337, 391, 558
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	9 cut(s)	10, 144, 359, 386, 937, 942, 964, 1019, 1033
CviQI	GTAC	4 cut(s)	262, 337, 391, 558
DdeI	CTNAG	2 cut(s)	889, 897
DinI	GGCGCC	1 cut(s)	772
DpnI	GATC	4 cut(s)	83, 603, 669, 986
DpnII	GATC	4 cut(s)	81, 601, 667, 984
EaeI	YGGCCR	1 cut(s)	88
Eam1104I	CTCTTC	3 cut(s)	45, 664, 975
EarI	CTCTTC	3 cut(s)	45, 664, 975
Ecl136II	GAGCTC	2 cut(s)	55, 353
Eco130I	CCWWGG	1 cut(s)	143
Eco24I	GRGCYC	2 cut(s)	57, 355
Eco47I	GGWCC	1 cut(s)	73
Eco53kI	GAGCTC	2 cut(s)	55, 353
Eco88I	CYCGRG	2 cut(s)	205, 252
EcoICRI	GAGCTC	2 cut(s)	55, 353
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	143
EcoT22I	ATGCAT	2 cut(s)	387, 451
EcoT38I	GRGCYC	2 cut(s)	57, 355
EgeI	GGCGCC	1 cut(s)	772
EheI	GGCGCC	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	9 cut(s)	13, 147, 362, 389, 940, 945, 967, 1022, 1036
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	694
FatI	CATG	9 cut(s)	9, 143, 358, 385, 936, 941, 963, 1018, 1032
FauNDI	CATATG	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	3 cut(s)	91, 457, 894
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	2 cut(s)	57, 355
Fsp4HI	GCNGC	3 cut(s)	91, 457, 894
FspBI	CTAG	3 cut(s)	174, 332, 816
GlaI	GCGC	1 cut(s)	772
GluI	GCNGC	3 cut(s)	91, 457, 894
HaeII	RGCGCY	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	276, 286, 394
HhaI	GCGC	1 cut(s)	773
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	9 cut(s)	13, 147, 362, 389, 940, 945, 967, 1022, 1036
Hin6I	GCGC	1 cut(s)	771
HinP1I	GCGC	1 cut(s)	771
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	2 cut(s)	579, 826
HinfI	GANTC	6 cut(s)	13, 27, 33, 241, 404, 440
HpaII	CCGG	3 cut(s)	276, 286, 394
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	4 cut(s)	124, 140, 295, 337
Hpy188I	TCNGA	4 cut(s)	32, 652, 667, 733
Hpy8I	GTNNAC	4 cut(s)	124, 140, 295, 337
HpyAV	CCTTC	1 cut(s)	949
HpyCH4III	ACNGT	2 cut(s)	299, 746
HpyCH4V	TGCA	3 cut(s)	385, 449, 1036
HpyF10VI	GCNNNNNNNGC	4 cut(s)	254, 725, 777, 825
HpyF3I	CTNAG	2 cut(s)	889, 897
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	9 cut(s)	13, 147, 362, 389, 940, 945, 967, 1022, 1036
HspAI	GCGC	1 cut(s)	771
KasI	GGCGCC	1 cut(s)	770
Kzo9I	GATC	4 cut(s)	81, 601, 667, 984
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	3 cut(s)	358, 724, 785
Lsp1109I	GCAGC	1 cut(s)	880
MaeI	CTAG	3 cut(s)	174, 332, 816
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	4 cut(s)	83, 603, 669, 986
MboI	GATC	4 cut(s)	81, 601, 667, 984
MflI	RGATCY	1 cut(s)	984
MhlI	GDGCHC	2 cut(s)	57, 355
MluCI	AATT	6 cut(s)	108, 539, 616, 641, 835, 842
Mly113I	GGCGCC	1 cut(s)	771
MlyI	GAGTC	2 cut(s)	22, 398
Mph1103I	ATGCAT	2 cut(s)	387, 451
MroXI	GAANNNNTTC	1 cut(s)	111
MseI	TTAA	3 cut(s)	513, 567, 885
MspI	CCGG	3 cut(s)	276, 286, 394
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	4 cut(s)	254, 725, 777, 825
NarI	GGCGCC	1 cut(s)	771
NcoI	CCATGG	1 cut(s)	143
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	4 cut(s)	81, 601, 667, 984
NlaIII	CATG	9 cut(s)	13, 147, 362, 389, 940, 945, 967, 1022, 1036
NlaIV	GGNNCC	2 cut(s)	6, 772
NsiI	ATGCAT	2 cut(s)	387, 451
NspI	RCATGY	1 cut(s)	940
PciI	ACATGT	1 cut(s)	936
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	4 cut(s)	27, 33, 241, 440
PfoI	TCCNGGA	1 cut(s)	22
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	92, 458, 895
PleI	GAGTC	2 cut(s)	21, 398
PluTI	GGCGCC	1 cut(s)	774
PpsI	GAGTC	2 cut(s)	21, 398
PscI	ACATGT	1 cut(s)	936
Psp124BI	GAGCTC	2 cut(s)	57, 355
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	6, 772
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	984
RsaI	GTAC	4 cut(s)	263, 338, 392, 559
RsaNI	GTAC	4 cut(s)	262, 337, 391, 558
SacI	GAGCTC	2 cut(s)	57, 355
SalI	GTCGAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	513, 567, 885
SatI	GCNGC	3 cut(s)	91, 457, 894
Sau3AI	GATC	4 cut(s)	81, 601, 667, 984
Sau96I	GGNCC	1 cut(s)	73
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	2 cut(s)	22, 398
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	2 cut(s)	57, 355
SfcI	CTRYAG	2 cut(s)	199, 340
SfoI	GGCGCC	1 cut(s)	772
SinI	GGWCC	1 cut(s)	73
SmlI	CTYRAG	2 cut(s)	675, 1005
SmoI	CTYRAG	2 cut(s)	675, 1005
SpeI	ACTAGT	1 cut(s)	331
Sse9I	AATT	6 cut(s)	108, 539, 616, 641, 835, 842
SsiI	CCGC	3 cut(s)	91, 311, 457
SspDI	GGCGCC	1 cut(s)	770
SspMI	CTAG	3 cut(s)	174, 332, 816
SstI	GAGCTC	2 cut(s)	57, 355
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	299, 746
TaqI	TCGA	4 cut(s)	123, 831, 911, 927
TaqII	GACCGA	1 cut(s)	90
TasI	AATT	6 cut(s)	108, 539, 616, 641, 835, 842
TatI	WGTACW	2 cut(s)	336, 557
TauI	GCSGC	2 cut(s)	93, 459
TfiI	GAWTC	4 cut(s)	27, 33, 241, 440
Tru1I	TTAA	3 cut(s)	513, 567, 885
Tru9I	TTAA	3 cut(s)	513, 567, 885
TscAI	CASTG	2 cut(s)	297, 782
TseI	GCWGC	1 cut(s)	893
TspDTI	ATGAA	5 cut(s)	63, 335, 432, 750, 980
TspRI	CASTG	2 cut(s)	297, 782
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	940
XmiI	GTMKAC	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	3 cut(s)	174, 332, 816
ZrmI	AGTACT	1 cut(s)	559
Zsp2I	ATGCAT	2 cut(s)	387, 451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.