Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007300.1

Orthogroup ID

OG0013377

Physical Location & Seq

Genomic Coordinates Reverse (-)

43655 .. 46880

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007300.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgagtcttcctcctggattcagattccacccaactgatgaagagcttgttgcttactatctggaccgaaagatcaatggctgcaccattgagcttgaaattattccagaggtcgacctctacaaatgtgaaccatgggatttgcctgataagtcattcttgcctagcaaggatatggagtggtatttctacagcccgagggataggaaatacccgaatgggtcaagaacgaatcgggctactcgggcagggtactggaaagccaccggaaaagaccgggcagtgaacagtaacaggcgtgcggttgggatgaagaagacactggtgtactatagagggagagctcctcatggcagtagaaccaactgggttatgcatgagtaccggctcaccgactcggtgtgtggcagtccatcatcatctctaaaggattcatatgcattgtgccgcattttcaaaaagacaatccaaatacccaagaataacaaagaagaaaagacgattaaaaacactctcttgaacgaaaaaaaattaagggaagacaccagtactggcattaacgagggagaagcttcaagagggatagaaacagatcaagattatgagaattattctaatcctgattatcccaaatttctctctgatacctcttcttctgatctcactcaagggacacctactgaaactggcatagcagatgatttacaagctccatttgcttctgatgaagctaacagttcagctaatctctactctattggtgcccactgctcctcaaataatctatttcaggatacatatatgccgagcgatacaagcttcgagaattaccaatttccttacccacctttggaacttgaagacttcccgatgattaacttagctgcagagacaaacacatcaaagccccaaatcatcgatgattacatgtcatgcgacagattgaaggactacatgaatggaacattggaagagatcttctctttatgttcctctcaagacaacaaccatgctgcccgccccatgcaagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

344

Amino Acids

39.27

Weight (kDa)

5.05

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54330
fragaria_vesca	FvH4_3g13980
malus_domestica	MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica	Prupe.4G126800_v2.0.a1
pyrus_communis	pycom05g21560 pycom10g18340
rosa_chinensis	RchiOBHm_Chr5g0023211
rosa_laevigata	RLG00000032709
rosa_multiflora	Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056140
rosa_rugosa	Rorug05G0078000
rosa_samantha	Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana	Rw5G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	761
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	3 cut(s)	302, 448, 1018
AcsI	RAATTY	1 cut(s)	632
AfaI	GTAC	4 cut(s)	254, 329, 383, 550
AfiI	CCNNNNNNNGG	1 cut(s)	850
AflIII	ACRYGT	1 cut(s)	927
AgsI	TTSAA	6 cut(s)	98, 457, 520, 576, 860, 946
AjnI	CCWGG	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	950, 982
AluBI	AGCT	9 cut(s)	46, 94, 344, 572, 710, 731, 743, 819, 884
AluI	AGCT	9 cut(s)	46, 94, 344, 572, 710, 731, 743, 819, 884
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	884
Ama87I	CYCGRG	2 cut(s)	196, 243
ApeKI	GCWGC	3 cut(s)	81, 884, 1013
ApoI	RAATTY	1 cut(s)	632
Asp700I	GAANNNNTTC	1 cut(s)	102
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	382
AvaI	CYCGRG	2 cut(s)	196, 243
AvaII	GGWCC	1 cut(s)	64
BaeGI	GKGCMC	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	3 cut(s)	323, 546, 867
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	68, 871, 1000
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	15
BciVI	GTATCC	1 cut(s)	787
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	1 cut(s)	884
BfaI	CTAG	1 cut(s)	165
BfmI	CTRYAG	3 cut(s)	190, 331, 885
BfuI	GTATCC	1 cut(s)	787
BglII	AGATCT	1 cut(s)	975
BisI	GCNGC	4 cut(s)	82, 448, 885, 1014
BlsI	GCNGC	4 cut(s)	83, 449, 886, 1015
BmcAI	AGTACT	1 cut(s)	550
Bme1390I	CCNGG	2 cut(s)	15, 278
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	2 cut(s)	196, 243
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	763
BmrFI	CCNGG	2 cut(s)	15, 278
BmrI	ACTGGG	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	3 cut(s)	323, 546, 867
BplI	GAGNNNNNCTC	5 cut(s)	27, 331, 363, 965, 997
BpuEI	CTTGAG	2 cut(s)	651, 981
BpuMI	CCSGG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	918
BsaJI	CCNNGG	2 cut(s)	134, 197
BsaWI	WCCGGW	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	850
Bse118I	RCCGGY	1 cut(s)	384
Bse1I	ACTGG	6 cut(s)	260, 327, 371, 546, 556, 691
BseBI	CCWGG	1 cut(s)	15
BseCI	ATCGAT	1 cut(s)	918
BseDI	CCNNGG	2 cut(s)	134, 197
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	850
BseNI	ACTGG	6 cut(s)	260, 327, 371, 546, 556, 691
BseRI	GAGGAG	2 cut(s)	336, 763
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	3 cut(s)	68, 871, 1000
BsgI	GTGCAG	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	761
BshVI	ATCGAT	1 cut(s)	918
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	2 cut(s)	196, 243
BsiSI	CCGG	3 cut(s)	267, 277, 385
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	1 cut(s)	850
BsmAI	GTCTC	1 cut(s)	884
BsmFI	GGGAC	1 cut(s)	685
BsoBI	CYCGRG	2 cut(s)	196, 243
Bsp1286I	GDGCHC	2 cut(s)	346, 766
Bsp143I	GATC	4 cut(s)	72, 592, 658, 975
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	3 cut(s)	302, 448, 1018
BspDI	ATCGAT	1 cut(s)	918
BspLI	GGNNCC	1 cut(s)	763
BspMAI	CTGCAG	1 cut(s)	889
BspQI	GCTCTTC	1 cut(s)	36
BspT107I	GGYRCC	1 cut(s)	761
BsrFI	RCCGGY	1 cut(s)	384
BsrI	ACTGG	6 cut(s)	260, 327, 371, 546, 556, 691
BssAI	RCCGGY	1 cut(s)	384
BssECI	CCNNGG	2 cut(s)	134, 197
BssMI	GATC	4 cut(s)	72, 592, 658, 975
BssT1I	CCWWGG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	290, 737
Bst6I	CTCTTC	3 cut(s)	36, 655, 966
BstC8I	GCNNGC	2 cut(s)	300, 1018
BstDEI	CTNAG	1 cut(s)	880
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	4 cut(s)	75, 595, 661, 978
BstMAI	GTCTC	1 cut(s)	884
BstMBI	GATC	4 cut(s)	72, 592, 658, 975
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 716, 816
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	931
BstSCI	CCNGG	2 cut(s)	13, 276
BstSFI	CTRYAG	3 cut(s)	190, 331, 885
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	3 cut(s)	68, 871, 1000
BstV2I	GAAGAC	3 cut(s)	323, 546, 867
BstX2I	RGATCY	1 cut(s)	975
BstYI	RGATCY	1 cut(s)	975
Bsu15I	ATCGAT	1 cut(s)	918
BsuI	GTATCC	1 cut(s)	787
BsuTUI	ATCGAT	1 cut(s)	918
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	2 cut(s)	288, 766
BtsIMutI	CAGTG	3 cut(s)	288, 320, 766
Cac8I	GCNNGC	2 cut(s)	300, 1018
Cfr10I	RCCGGY	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	918
Csp6I	GTAC	4 cut(s)	253, 328, 382, 549
CviAII	CATG	8 cut(s)	135, 350, 377, 928, 933, 955, 1010, 1024
CviQI	GTAC	4 cut(s)	253, 328, 382, 549
DdeI	CTNAG	1 cut(s)	880
DpnI	GATC	4 cut(s)	74, 594, 660, 977
DpnII	GATC	4 cut(s)	72, 592, 658, 975
Eam1104I	CTCTTC	3 cut(s)	36, 655, 966
EarI	CTCTTC	3 cut(s)	36, 655, 966
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	344
Eco88I	CYCGRG	2 cut(s)	196, 243
EcoICRI	GAGCTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	134
EcoT22I	ATGCAT	2 cut(s)	378, 442
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	134
FaeI	CATG	8 cut(s)	138, 353, 380, 931, 936, 958, 1013, 1027
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	8 cut(s)	134, 349, 376, 927, 932, 954, 1009, 1023
FauI	CCCGC	1 cut(s)	1025
FauNDI	CATATG	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	82, 448, 885, 1014
FokI	GGATG	1 cut(s)	322
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	4 cut(s)	82, 448, 885, 1014
FspBI	CTAG	1 cut(s)	165
GluI	GCNGC	4 cut(s)	82, 448, 885, 1014
HapII	CCGG	3 cut(s)	267, 277, 385
Hin1II	CATG	8 cut(s)	138, 353, 380, 931, 936, 958, 1013, 1027
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	2 cut(s)	570, 817
HinfI	GANTC	6 cut(s)	4, 18, 24, 232, 395, 431
HpaII	CCGG	3 cut(s)	267, 277, 385
HphI	GGTGA	1 cut(s)	382
Hpy166II	GTNNAC	4 cut(s)	115, 131, 286, 328
Hpy188I	TCNGA	4 cut(s)	23, 643, 658, 724
Hpy8I	GTNNAC	4 cut(s)	115, 131, 286, 328
HpyAV	CCTTC	1 cut(s)	940
HpyCH4III	ACNGT	2 cut(s)	290, 737
HpyCH4V	TGCA	5 cut(s)	84, 376, 440, 887, 1027
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 716, 816
HpyF3I	CTNAG	1 cut(s)	880
Hsp92II	CATG	8 cut(s)	138, 353, 380, 931, 936, 958, 1013, 1027
Kzo9I	GATC	4 cut(s)	72, 592, 658, 975
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	3 cut(s)	349, 715, 776
Lsp1109I	GCAGC	3 cut(s)	68, 871, 1000
MaeI	CTAG	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	4 cut(s)	74, 594, 660, 977
MboI	GATC	4 cut(s)	72, 592, 658, 975
MflI	RGATCY	1 cut(s)	975
MhlI	GDGCHC	2 cut(s)	346, 766
MluCI	AATT	6 cut(s)	99, 530, 607, 632, 826, 833
MlyI	GAGTC	2 cut(s)	13, 389
Mph1103I	ATGCAT	2 cut(s)	378, 442
MroXI	GAANNNNTTC	1 cut(s)	102
MseI	TTAA	4 cut(s)	504, 533, 558, 876
MspI	CCGG	3 cut(s)	267, 277, 385
MspR9I	CCNGG	2 cut(s)	15, 278
MvaI	CCWGG	1 cut(s)	15
MwoI	GCNNNNNNNGC	3 cut(s)	245, 716, 816
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	436
NdeII	GATC	4 cut(s)	72, 592, 658, 975
NlaIII	CATG	8 cut(s)	138, 353, 380, 931, 936, 958, 1013, 1027
NlaIV	GGNNCC	1 cut(s)	763
NmeAIII	GCCGAG	1 cut(s)	831
NsiI	ATGCAT	2 cut(s)	378, 442
NspI	RCATGY	1 cut(s)	931
PciI	ACATGT	1 cut(s)	927
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	102
PfeI	GAWTC	4 cut(s)	18, 24, 232, 431
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	4 cut(s)	83, 449, 886, 1015
PleI	GAGTC	2 cut(s)	12, 389
PpsI	GAGTC	2 cut(s)	12, 389
PscI	ACATGT	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	763
PspPI	GGNCC	1 cut(s)	64
PstI	CTGCAG	1 cut(s)	889
PsuI	RGATCY	1 cut(s)	975
RsaI	GTAC	4 cut(s)	254, 329, 383, 550
RsaNI	GTAC	4 cut(s)	253, 328, 382, 549
SacI	GAGCTC	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	113
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	4 cut(s)	504, 533, 558, 876
SatI	GCNGC	4 cut(s)	82, 448, 885, 1014
Sau3AI	GATC	4 cut(s)	72, 592, 658, 975
Sau96I	GGNCC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	550
SchI	GAGTC	2 cut(s)	13, 389
ScrFI	CCNGG	2 cut(s)	15, 278
SduI	GDGCHC	2 cut(s)	346, 766
SfcI	CTRYAG	3 cut(s)	190, 331, 885
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	666, 996
SmoI	CTYRAG	2 cut(s)	666, 996
Sse9I	AATT	6 cut(s)	99, 530, 607, 632, 826, 833
SsiI	CCGC	3 cut(s)	302, 448, 1018
SspMI	CTAG	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	2 cut(s)	13, 276
StyI	CCWWGG	1 cut(s)	134
TaaI	ACNGT	2 cut(s)	290, 737
TaqI	TCGA	3 cut(s)	114, 822, 918
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	6 cut(s)	99, 530, 607, 632, 826, 833
TatI	WGTACW	2 cut(s)	327, 548
TauI	GCSGC	1 cut(s)	450
TfiI	GAWTC	4 cut(s)	18, 24, 232, 431
Tru1I	TTAA	4 cut(s)	504, 533, 558, 876
Tru9I	TTAA	4 cut(s)	504, 533, 558, 876
TscAI	CASTG	3 cut(s)	288, 327, 773
TseI	GCWGC	3 cut(s)	81, 884, 1013
TspDTI	ATGAA	5 cut(s)	54, 326, 423, 741, 971
TspRI	CASTG	3 cut(s)	288, 327, 773
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	931
XmiI	GTMKAC	1 cut(s)	114
XmnI	GAANNNNTTC	1 cut(s)	102
XspI	CTAG	1 cut(s)	165
ZrmI	AGTACT	1 cut(s)	550
Zsp2I	ATGCAT	2 cut(s)	378, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.