Rroxscaffold_1G00056140
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013377
Physical Location & Seq
Reverse (-)
77930596 .. 77933909
3314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056140.1

Sequence Viewer

Length: 1044 bp
ATGGCACCCATGAGTCTTCCTCCTGGATTCAGATTCCACCCAACTGACGAAGAGCTCGTTGCTTACTATCTGGACCGAAAGATCAATGGCCGCACCATTGAGCTTGAAATTATTCCAGAGGTCGACCTCTACAAATGTGAACCATGGGATTTGCCTGATAAGTCATTCTTGCCTAGCAAGGATATGGAGTGGTATTTCTACAGCCCGAGGGATAGGAAATACCCGAATGGGTCAAGAACGAATCGGGCTACTCGGGCAGGGTACTGGAAAGCCACCGGAAAAGACCGGGCAGTGAACAGTAACAGGCGTGCGGTTGGGATGAAGAAGACACTGGTGTACTATAGAGGGAGAGCTCCTCATGGCATTAGAACCAACTGGGTTATGCATGAGTACCGGCTCACCGACTCGGTGTGTGGCAGTCCATCATCATCTCTAAAGGATTCATATGCATTGTGCCGCATTTTCAAAAAGACAATCCAAATACCCAAGAATAACAAAGAAGAAAAGACGATTAAAAACACTCTCTTGAACGAAAAAAAATTAAGGGAAGACACCAGTACTGGCATTAACGAGGGAGAAGCTTCAAGAGGGATAGAAACAGATCAAGATTATGAGAATTATTCTAATCCTGATTATCCCAAATTTCTCTCTGATACCTCTTCTTCTGATCTCACTCAAGGGACACCTACTGAAACTGGCATAGCAGATGATTTACAAGCTCCATTTGCTTCTGATGAAGCTAACAGTTCAGCTAATCTCTACTCTCTTGGTGCCCACTGCTCCTCAAATAATCTATTTCAGGATACATATATGCCGAGCGATGCAAGCTTCGAGAATTACCAATTTCCTTACCCACCTTTGGAACTTGAAGACTTCCCGATGATTAACTTAGCTGCAGAGACAAACACATCGAAGCCCCAAATCATCGATGATTACATGTCATGCGACAGATTGAAGGACTACATGAATGGAACATTGGAAGAGATCTTCTCTTTGTGTTCCTCTAAAGACAACAACCATGTTGCCCTCCCCATGCAAGACTAA

Protein Analysis

347

Amino Acids

39.6

Weight (kDa)

5.12

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 7 - 133 1.6e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54330
fragaria_vesca FvH4_3g13980
malus_domestica MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica Prupe.4G126800_v2.0.a1
pyrus_communis pycom05g21560 pycom10g18340
rosa_chinensis RchiOBHm_Chr5g0023211
rosa_laevigata RLG00000032709
rosa_multiflora Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii Rroxscaffold_1G00056140
rosa_rugosa Rorug05G0078000
rosa_samantha Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana Rw5G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 770
AccI GTMKAC 1 cut(s) 123
AciI CCGC 3 cut(s) 91, 311, 457
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 641
AfaI GTAC 4 cut(s) 263, 338, 392, 559
AfiI CCNNNNNNNGG 1 cut(s) 859
AflIII ACRYGT 1 cut(s) 936
AgsI TTSAA 6 cut(s) 107, 466, 529, 585, 869, 955
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 959, 991
AluBI AGCT 9 cut(s) 55, 103, 353, 581, 719, 740, 752, 828, 893
AluI AGCT 9 cut(s) 55, 103, 353, 581, 719, 740, 752, 828, 893
Alw21I GWGCWC 2 cut(s) 57, 355
Alw26I GTCTC 1 cut(s) 893
Ama87I CYCGRG 2 cut(s) 205, 252
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 893
ApoI RAATTY 1 cut(s) 641
Asp700I GAANNNNTTC 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 2 cut(s) 205, 252
AvaII GGWCC 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 775
BanI GGYRCC 2 cut(s) 4, 770
BanII GRGCYC 2 cut(s) 57, 355
BbsI GAAGAC 4 cut(s) 8, 332, 555, 876
Bbv12I GWGCWC 2 cut(s) 57, 355
BbvI GCAGC 1 cut(s) 880
BccI CCATC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 24
BciVI GTATCC 1 cut(s) 796
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 893
BfaI CTAG 1 cut(s) 174
BfmI CTRYAG 3 cut(s) 199, 340, 894
BfuI GTATCC 1 cut(s) 796
BglII AGATCT 1 cut(s) 984
BisI GCNGC 3 cut(s) 91, 457, 894
BlsI GCNGC 3 cut(s) 92, 458, 895
BmcAI AGTACT 1 cut(s) 559
Bme1390I CCNGG 2 cut(s) 24, 287
Bme18I GGWCC 1 cut(s) 73
BmeT110I CYCGRG 2 cut(s) 205, 252
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 6, 772
BmrFI CCNGG 2 cut(s) 24, 287
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 811
BmuI ACTGGG 1 cut(s) 385
BpiI GAAGAC 4 cut(s) 8, 332, 555, 876
BplI GAGNNNNNCTC 5 cut(s) 36, 340, 372, 974, 1006
BpuEI CTTGAG 1 cut(s) 660
BpuMI CCSGG 1 cut(s) 287
Bsa29I ATCGAT 1 cut(s) 927
BsaJI CCNNGG 2 cut(s) 143, 206
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 859
Bse118I RCCGGY 1 cut(s) 393
Bse1I ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BseBI CCWGG 1 cut(s) 24
BseCI ATCGAT 1 cut(s) 927
BseDI CCNNGG 2 cut(s) 143, 206
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 859
BseNI ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BseRI GAGGAG 2 cut(s) 345, 772
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 1 cut(s) 880
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 2 cut(s) 4, 770
BshVI ATCGAT 1 cut(s) 927
BsiHKAI GWGCWC 2 cut(s) 57, 355
BsiHKCI CYCGRG 2 cut(s) 205, 252
BsiSI CCGG 3 cut(s) 276, 286, 394
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 1 cut(s) 859
BsmAI GTCTC 1 cut(s) 893
BsmFI GGGAC 1 cut(s) 694
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 2 cut(s) 205, 252
Bsp1286I GDGCHC 3 cut(s) 57, 355, 775
Bsp143I GATC 4 cut(s) 81, 601, 667, 984
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 3 cut(s) 91, 311, 457
BspANI GGCC 1 cut(s) 90
BspDI ATCGAT 1 cut(s) 927
BspLI GGNNCC 2 cut(s) 6, 772
BspMAI CTGCAG 1 cut(s) 898
BspQI GCTCTTC 1 cut(s) 45
BspT107I GGYRCC 2 cut(s) 4, 770
BsrFI RCCGGY 1 cut(s) 393
BsrI ACTGG 6 cut(s) 269, 336, 380, 555, 565, 700
BssAI RCCGGY 1 cut(s) 393
BssECI CCNNGG 2 cut(s) 143, 206
BssMI GATC 4 cut(s) 81, 601, 667, 984
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 299, 746
Bst6I CTCTTC 3 cut(s) 45, 664, 975
BstC8I GCNNGC 2 cut(s) 309, 826
BstDEI CTNAG 1 cut(s) 889
BstDSI CCRYGG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 4 cut(s) 84, 604, 670, 987
BstMAI GTCTC 1 cut(s) 893
BstMBI GATC 4 cut(s) 81, 601, 667, 984
BstMWI GCNNNNNNNGC 3 cut(s) 254, 725, 825
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 940
BstSCI CCNGG 2 cut(s) 22, 285
BstSFI CTRYAG 3 cut(s) 199, 340, 894
BstSLI GKGCMC 1 cut(s) 775
BstV1I GCAGC 1 cut(s) 880
BstV2I GAAGAC 4 cut(s) 8, 332, 555, 876
BstX2I RGATCY 1 cut(s) 984
BstYI RGATCY 1 cut(s) 984
Bsu15I ATCGAT 1 cut(s) 927
BsuI GTATCC 1 cut(s) 796
BsuRI GGCC 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 927
BtgI CCRYGG 1 cut(s) 143
BtgZI GCGATG 1 cut(s) 834
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 2 cut(s) 297, 775
BtsIMutI CAGTG 3 cut(s) 297, 329, 775
Cac8I GCNNGC 2 cut(s) 309, 826
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 927
Csp6I GTAC 4 cut(s) 262, 337, 391, 558
CviAII CATG 9 cut(s) 10, 144, 359, 386, 937, 942, 964, 1019, 1033
CviQI GTAC 4 cut(s) 262, 337, 391, 558
DdeI CTNAG 1 cut(s) 889
DpnI GATC 4 cut(s) 83, 603, 669, 986
DpnII GATC 4 cut(s) 81, 601, 667, 984
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 3 cut(s) 45, 664, 975
EarI CTCTTC 3 cut(s) 45, 664, 975
Ecl136II GAGCTC 2 cut(s) 55, 353
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 2 cut(s) 57, 355
Eco47I GGWCC 1 cut(s) 73
Eco53kI GAGCTC 2 cut(s) 55, 353
Eco88I CYCGRG 2 cut(s) 205, 252
EcoICRI GAGCTC 2 cut(s) 55, 353
EcoRII CCWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 2 cut(s) 387, 451
EcoT38I GRGCYC 2 cut(s) 57, 355
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 9 cut(s) 13, 147, 362, 389, 940, 945, 967, 1022, 1036
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 694
FatI CATG 9 cut(s) 9, 143, 358, 385, 936, 941, 963, 1018, 1032
FauNDI CATATG 1 cut(s) 445
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 3 cut(s) 91, 457, 894
FokI GGATG 1 cut(s) 331
FriOI GRGCYC 2 cut(s) 57, 355
Fsp4HI GCNGC 3 cut(s) 91, 457, 894
FspBI CTAG 1 cut(s) 174
GluI GCNGC 3 cut(s) 91, 457, 894
HaeIII GGCC 1 cut(s) 90
HapII CCGG 3 cut(s) 276, 286, 394
Hin1II CATG 9 cut(s) 13, 147, 362, 389, 940, 945, 967, 1022, 1036
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HindIII AAGCTT 2 cut(s) 579, 826
HinfI GANTC 6 cut(s) 13, 27, 33, 241, 404, 440
HpaII CCGG 3 cut(s) 276, 286, 394
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 4 cut(s) 124, 140, 295, 337
Hpy188I TCNGA 4 cut(s) 32, 652, 667, 733
Hpy8I GTNNAC 4 cut(s) 124, 140, 295, 337
HpyAV CCTTC 1 cut(s) 949
HpyCH4III ACNGT 2 cut(s) 299, 746
HpyCH4V TGCA 5 cut(s) 385, 449, 824, 896, 1036
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 725, 825
HpyF3I CTNAG 1 cut(s) 889
Hsp92II CATG 9 cut(s) 13, 147, 362, 389, 940, 945, 967, 1022, 1036
Kzo9I GATC 4 cut(s) 81, 601, 667, 984
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 358, 724, 785
Lsp1109I GCAGC 1 cut(s) 880
LweI GCATC 1 cut(s) 811
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 299
MalI GATC 4 cut(s) 83, 603, 669, 986
MboI GATC 4 cut(s) 81, 601, 667, 984
MflI RGATCY 1 cut(s) 984
MhlI GDGCHC 3 cut(s) 57, 355, 775
MluCI AATT 6 cut(s) 108, 539, 616, 641, 835, 842
MlyI GAGTC 2 cut(s) 22, 398
Mph1103I ATGCAT 2 cut(s) 387, 451
MroXI GAANNNNTTC 1 cut(s) 111
MseI TTAA 4 cut(s) 513, 542, 567, 885
MspI CCGG 3 cut(s) 276, 286, 394
MspR9I CCNGG 2 cut(s) 24, 287
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 254, 725, 825
NciI CCSGG 1 cut(s) 287
NcoI CCATGG 1 cut(s) 143
NdeI CATATG 1 cut(s) 445
NdeII GATC 4 cut(s) 81, 601, 667, 984
NlaIII CATG 9 cut(s) 13, 147, 362, 389, 940, 945, 967, 1022, 1036
NlaIV GGNNCC 2 cut(s) 6, 772
NmeAIII GCCGAG 1 cut(s) 840
NsiI ATGCAT 2 cut(s) 387, 451
NspI RCATGY 1 cut(s) 940
PciI ACATGT 1 cut(s) 936
PciSI GCTCTTC 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 111
PfeI GAWTC 4 cut(s) 27, 33, 241, 440
PfoI TCCNGGA 1 cut(s) 22
PkrI GCNGC 3 cut(s) 92, 458, 895
PleI GAGTC 2 cut(s) 21, 398
PpsI GAGTC 2 cut(s) 21, 398
PscI ACATGT 1 cut(s) 936
Psp124BI GAGCTC 2 cut(s) 57, 355
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 6, 772
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 898
PsuI RGATCY 1 cut(s) 984
RsaI GTAC 4 cut(s) 263, 338, 392, 559
RsaNI GTAC 4 cut(s) 262, 337, 391, 558
SacI GAGCTC 2 cut(s) 57, 355
SalI GTCGAC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 4 cut(s) 513, 542, 567, 885
SatI GCNGC 3 cut(s) 91, 457, 894
Sau3AI GATC 4 cut(s) 81, 601, 667, 984
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 559
SchI GAGTC 2 cut(s) 22, 398
ScrFI CCNGG 2 cut(s) 24, 287
SduI GDGCHC 3 cut(s) 57, 355, 775
SfaNI GCATC 1 cut(s) 811
SfcI CTRYAG 3 cut(s) 199, 340, 894
SinI GGWCC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 675
SmoI CTYRAG 1 cut(s) 675
Sse9I AATT 6 cut(s) 108, 539, 616, 641, 835, 842
SsiI CCGC 3 cut(s) 91, 311, 457
SspMI CTAG 1 cut(s) 174
SstI GAGCTC 2 cut(s) 57, 355
StyD4I CCNGG 2 cut(s) 22, 285
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 299, 746
TaqI TCGA 4 cut(s) 123, 831, 911, 927
TaqII GACCGA 1 cut(s) 90
TasI AATT 6 cut(s) 108, 539, 616, 641, 835, 842
TatI WGTACW 2 cut(s) 336, 557
TauI GCSGC 2 cut(s) 93, 459
TfiI GAWTC 4 cut(s) 27, 33, 241, 440
Tru1I TTAA 4 cut(s) 513, 542, 567, 885
Tru9I TTAA 4 cut(s) 513, 542, 567, 885
TscAI CASTG 3 cut(s) 297, 336, 782
TseI GCWGC 1 cut(s) 893
TspDTI ATGAA 4 cut(s) 335, 432, 750, 980
TspRI CASTG 3 cut(s) 297, 336, 782
VpaK11BI GGWCC 1 cut(s) 73
XapI RAATTY 1 cut(s) 641
XceI RCATGY 1 cut(s) 940
XmiI GTMKAC 1 cut(s) 123
XmnI GAANNNNTTC 1 cut(s) 111
XspI CTAG 1 cut(s) 174
ZrmI AGTACT 1 cut(s) 559
Zsp2I ATGCAT 2 cut(s) 387, 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.