Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0013377

Physical Location & Seq

Genomic Coordinates Reverse (-)

6754980 .. 6755521

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0078000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGACGAAACGTGTTTTCTCGTTCGACCTCTTTACTTTCCTCCTTCTCGCCGGCCTCTTTGCTCACCTGAGTCACCTCCTGCTCGCCGACCCCGATGACAATCCTAACTACGGCGCTTATCACCCCATTGAGGACATCCACAACCCTCATGTGATAGAGATCGCGGAGTTTGCTGTCTCCGAGCTCAACAAGGAACTACGGAAGAAGCTGGTGTTTCAGAGCGTGGTTCGAGGTGAGAGTCAGGTTGCAGCGGGACAAAATTATAAGCTTATCGTCGCGGTCAAGGATGAGTCCTCCTACCCCATCTCCACAGTGAATTATGAGTGTGTTGTCTGGGAGAAGGTTTGGCTAAAGTTTAGGAAAATGACCTCCTTTCATGAGGTTAAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

130

Amino Acids

14.97

Weight (kDa)

6.29

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	38 - 128	4.1e-12	Cystatin domain
SQAPI	PF16845	43 - 128	4.6e-30	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54330
fragaria_vesca	FvH4_3g13980
malus_domestica	MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica	Prupe.4G126800_v2.0.a1
pyrus_communis	pycom05g21560 pycom10g18340
rosa_chinensis	RchiOBHm_Chr5g0023211
rosa_laevigata	RLG00000032709
rosa_multiflora	Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii	Rroxscaffold_1G00056140
rosa_rugosa	Rorug05G0078000
rosa_samantha	Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana	Rw5G014810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	264
AccII	CGCG	2 cut(s)	164, 278
AciI	CCGC	3 cut(s)	164, 251, 278
AfiI	CCNNNNNNNGG	2 cut(s)	110, 130
AflIII	ACRYGT	1 cut(s)	10
AluBI	AGCT	3 cut(s)	184, 208, 268
AluI	AGCT	3 cut(s)	184, 208, 268
Alw21I	GWGCWC	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	181
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	116
AsuHPI	GGTGA	4 cut(s)	56, 65, 113, 245
BanII	GRGCYC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	181
BfoI	RGCGCY	1 cut(s)	117
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BsaBI	GATNNNNATC	2 cut(s)	99, 158
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 130
Bse118I	RCCGGY	1 cut(s)	50
Bse8I	GATNNNNATC	2 cut(s)	99, 158
BseGI	GGATG	2 cut(s)	135, 292
BseJI	GATNNNNATC	2 cut(s)	99, 158
BseLI	CCNNNNNNNGG	2 cut(s)	110, 130
BseMII	CTCAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	164, 278
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	110, 130
BsmAI	GTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	159
BspACI	CCGC	3 cut(s)	164, 251, 278
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	60
BspFNI	CGCG	2 cut(s)	164, 278
BspHI	TCATGA	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssMI	GATC	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	52, 84
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	135, 292
BstFNI	CGCG	2 cut(s)	164, 278
BstH2I	RGCGCY	1 cut(s)	117
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	1 cut(s)	162
BstMAI	GTCTC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	159
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstUI	CGCG	2 cut(s)	164, 278
BstV1I	GCAGC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	135, 292
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	52, 84
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	50
CviAII	CATG	2 cut(s)	149, 377
CviJI	RGCY	5 cut(s)	54, 184, 208, 268, 349
CviKI_1	RGCY	5 cut(s)	54, 184, 208, 268, 349
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	161
DpnII	GATC	1 cut(s)	159
Ecl136II	GAGCTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	184
EcoICRI	GAGCTC	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	186
FaeI	CATG	2 cut(s)	152, 380
FaiI	YATR	4 cut(s)	150, 264, 321, 378
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	148, 376
FauI	CCCGC	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	122, 299
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	249
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	2 cut(s)	152, 380
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	3 cut(s)	70, 238, 290
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	4 cut(s)	56, 65, 113, 245
Hpy188I	TCNGA	2 cut(s)	181, 219
Hpy188III	TCNNGA	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	53, 334
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	10
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	10
Hsp92II	CATG	2 cut(s)	152, 380
HspAI	GCGC	1 cut(s)	114
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	159
LpnPI	CCDG	6 cut(s)	64, 80, 92, 194, 227, 319
Lsp1109I	GCAGC	1 cut(s)	260
MaeII	ACGT	1 cut(s)	10
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	1 cut(s)	161
MboI	GATC	1 cut(s)	159
MboII	GAAGA	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	186
MluCI	AATT	2 cut(s)	259, 316
MlyI	GAGTC	3 cut(s)	79, 247, 299
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	1 cut(s)	384
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	51
MvnI	CGCG	2 cut(s)	164, 278
MwoI	GCNNNNNNNGC	1 cut(s)	170
NaeI	GCCGGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	159
NgoMIV	GCCGGC	1 cut(s)	50
NlaIII	CATG	2 cut(s)	152, 380
NmuCI	GTSAC	1 cut(s)	71
PagI	TCATGA	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	3 cut(s)	78, 246, 298
PpsI	GAGTC	3 cut(s)	78, 246, 298
PsiI	TTATAA	1 cut(s)	264
Psp124BI	GAGCTC	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	159
SchI	GAGTC	3 cut(s)	79, 247, 299
SduI	GDGCHC	1 cut(s)	186
Sse9I	AATT	2 cut(s)	259, 316
SsiI	CCGC	3 cut(s)	164, 251, 278
SstI	GAGCTC	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	13
TaqI	TCGA	2 cut(s)	24, 229
TasI	AATT	2 cut(s)	259, 316
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	71
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.