MD05G1239300.v1.1
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013377
Physical Location & Seq
Reverse (-)
37020798 .. 37024355
3558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1239300.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGCCAACAGTGGCCTATAAAGTCCATTGTCGCACAAGCCAAGCCAGTTTATTATCACACACTCGGAGAGTGCTAGCTGCAATGGCACCCATGAGTCTTCCTCCTGGATTTAGATTCCACCCAACAGATGAAGAGCTTGTTGCTTACTATCTGGATCGAAAAATCAATGGTCGGACCATTGAGCTAGAAATTATCCCAGAGGTCGACCTCTACAAATGTGAGCCATGGGATCTGCCTGATAAGTCGTTTCTTCCGAGCAAAGACATGGAGTGGTACTTCTATAGCCCGAGGGATAGGAAGTACCCCAACGGGTCGAGAACGAATAGGGCCACTCGAGCTGGGTACTGGAAAGCCACTGGAAAAGACAGGGCGGTGAGTAGTCAGAGGCGTGCTGTCGGCATGAAGAAGACATTGGTGTACTATAGAGGTAGAGCCCCTCATGGTATTAGAACCAACTGGGTTATGCATGAGTACCGGCTGGTCGATTCTGTGTGTGCCAATGCGTCATCATCTCTAAAGGATTCTTACGCATTGTGCCGAGTGTTCAAGAAAACAATACAAATGCCCAAGAATAACAAAGAAGAAAAGCCAATTGGGATTAACAATGCAGACAAGGATTCAATCTGGGTCTCCAATGAACAATTGTTTGGGGAAGAAAATAGTGGCATTAATGAGGGAGCTTCAAGAGGGATTGAAACTGATCAAGATGAGAATTATTCCACCCATGGTTATCCCAAATTTCCATCTGACACCTCTTCTTCAGATCTCACTCAAGGCACACCTACTGAAAATGGCATAGCTGATGATTTACAAGCTACATTTGCTTCTGATGAAGCGAACAGTTCTGCTGATCTATACTCTTTTGGTGTCCACTGCTCCTCAGATCTAGTTCAGGAAACGTATATACCACACAATACGAGCGTATTGAATAGCTATCAATTTCCTTACCCACCCTTACAACTTGAAGACTTCCCGCAGATCAATTTAGCTGCAGAGACAAAAACAGCAAAGCCCGAAATCATCGACGAGTACATGTTGTACGACAAGTTCAAGGATTGCATGAATGGAACGTTTGAAGAGATCTTCTCTTTATGTTCCTCTCAAGACAACTCTGTGGCCCTCTCCATGCAAGACTAA

Protein Analysis

379

Amino Acids

42.84

Weight (kDa)

5.41

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 34 - 160 2.4e-50 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013377)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54330
fragaria_vesca FvH4_3g13980
malus_domestica MD05G1239300.v1.1 MD10G1217500.v1.1
prunus_persica Prupe.4G126800_v2.0.a1
pyrus_communis pycom05g21560 pycom10g18340
rosa_chinensis RchiOBHm_Chr5g0023211
rosa_laevigata RLG00000032709
rosa_multiflora Rmu_sc0001735.1_g000001 Rmu_sc0007300.1_g000012
rosa_roxburghii Rroxscaffold_1G00056140
rosa_rugosa Rorug05G0078000
rosa_samantha Rh5AG164100 Rh5BG163600 Rh5CG178800 Rh5DG165400
rosa_wichuraiana Rw5G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 204
AciI CCGC 2 cut(s) 371, 974
AclI AACGTT 1 cut(s) 1070
AclWI GGATC 2 cut(s) 162, 237
AcsI RAATTY 1 cut(s) 737
AcuI CTGAAG 1 cut(s) 744
AfaI GTAC 7 cut(s) 275, 302, 344, 419, 473, 1031, 1040
AflIII ACRYGT 1 cut(s) 1032
AgsI TTSAA 8 cut(s) 547, 621, 684, 695, 928, 965, 1051, 1076
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 6 cut(s) 395, 427, 576, 608, 630, 662
AluBI AGCT 9 cut(s) 77, 136, 184, 338, 680, 800, 815, 933, 989
AluI AGCT 9 cut(s) 77, 136, 184, 338, 680, 800, 815, 933, 989
Alw26I GTCTC 2 cut(s) 634, 989
AlwI GGATC 2 cut(s) 162, 237
Ama87I CYCGRG 2 cut(s) 286, 333
AoxI GGCC 3 cut(s) 12, 327, 1116
ApeKI GCWGC 2 cut(s) 77, 989
ApoI RAATTY 1 cut(s) 737
AseI ATTAAT 1 cut(s) 669
AspS9I GGNCC 3 cut(s) 174, 327, 1117
AsuHPI GGTGA 1 cut(s) 385
AsuNHI GCTAGC 1 cut(s) 73
AvaI CYCGRG 2 cut(s) 286, 333
AvaII GGWCC 1 cut(s) 174
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 436
BbsI GAAGAC 3 cut(s) 89, 413, 972
BbvI GCAGC 2 cut(s) 64, 976
BccI CCATC 1 cut(s) 751
BciT130I CCWGG 1 cut(s) 105
BclI TGATCA 1 cut(s) 700
BcoDI GTCTC 2 cut(s) 634, 989
BfaI CTAG 3 cut(s) 74, 185, 887
BfmI CTRYAG 3 cut(s) 280, 421, 990
BglII AGATCT 3 cut(s) 763, 883, 1080
BisI GCNGC 2 cut(s) 78, 990
BlsI GCNGC 2 cut(s) 79, 991
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 1 cut(s) 174
BmeT110I CYCGRG 2 cut(s) 286, 333
BmgT120I GGNCC 3 cut(s) 174, 327, 1117
BmiI GGNNCC 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 466
BmtI GCTAGC 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 3 cut(s) 89, 413, 972
BplI GAGNNNNNCTC 4 cut(s) 85, 117, 1070, 1102
BpuEI CTTGAG 2 cut(s) 756, 1086
BsaI GGTCTC 1 cut(s) 634
BsaJI CCNNGG 3 cut(s) 224, 287, 724
Bse118I RCCGGY 1 cut(s) 474
Bse1I ACTGG 4 cut(s) 45, 350, 361, 461
Bse3DI GCAATG 1 cut(s) 87
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 224, 287, 724
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 4 cut(s) 45, 350, 361, 461
BseRI GAGGAG 1 cut(s) 868
BseXI GCAGC 2 cut(s) 64, 976
BseYI CCCAGC 1 cut(s) 338
BshFI GGCC 3 cut(s) 14, 329, 1118
BshNI GGYRCC 1 cut(s) 85
BsiHKCI CYCGRG 2 cut(s) 286, 333
BsiSI CCGG 1 cut(s) 475
BsmAI GTCTC 2 cut(s) 634, 989
BsnI GGCC 3 cut(s) 14, 329, 1118
Bso31I GGTCTC 1 cut(s) 634
BsoBI CYCGRG 2 cut(s) 286, 333
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
Bsp19I CCATGG 2 cut(s) 224, 724
BspACI CCGC 2 cut(s) 371, 974
BspANI GGCC 3 cut(s) 14, 329, 1118
BspCNI CTCAG 1 cut(s) 893
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 994
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 2 cut(s) 162, 237
BspQI GCTCTTC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 87
BsrFI RCCGGY 1 cut(s) 474
BsrI ACTGG 4 cut(s) 45, 350, 361, 461
BssAI RCCGGY 1 cut(s) 474
BssECI CCNNGG 3 cut(s) 224, 287, 724
BssMI GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
BssT1I CCWWGG 2 cut(s) 224, 724
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 10, 842
Bst6I CTCTTC 3 cut(s) 126, 760, 1071
BstC8I GCNNGC 2 cut(s) 75, 390
BstDEI CTNAG 1 cut(s) 880
BstDSI CCRYGG 2 cut(s) 224, 724
BstKTI GATC 8 cut(s) 157, 232, 703, 766, 853, 886, 981, 1083
BstMAI GTCTC 2 cut(s) 634, 989
BstMBI GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
BstMWI GCNNNNNNNGC 3 cut(s) 83, 335, 821
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 1036
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 3 cut(s) 280, 421, 990
BstV1I GCAGC 2 cut(s) 64, 976
BstV2I GAAGAC 3 cut(s) 89, 413, 972
BstX2I RGATCY 4 cut(s) 229, 763, 883, 1080
BstYI RGATCY 4 cut(s) 229, 763, 883, 1080
BsuRI GGCC 3 cut(s) 14, 329, 1118
BtgI CCRYGG 2 cut(s) 224, 724
BtsI GCAGTG 1 cut(s) 871
BtsIMutI CAGTG 3 cut(s) 15, 354, 871
Cac8I GCNNGC 2 cut(s) 75, 390
Cfr10I RCCGGY 1 cut(s) 474
Cfr13I GGNCC 3 cut(s) 174, 327, 1117
CseI GACGC 1 cut(s) 492
Csp6I GTAC 7 cut(s) 274, 301, 343, 418, 472, 1030, 1039
CviQI GTAC 7 cut(s) 274, 301, 343, 418, 472, 1030, 1039
DdeI CTNAG 1 cut(s) 880
DpnI GATC 8 cut(s) 156, 231, 702, 765, 852, 885, 980, 1082
DpnII GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
Eam1104I CTCTTC 3 cut(s) 126, 760, 1071
EarI CTCTTC 3 cut(s) 126, 760, 1071
Eco130I CCWWGG 2 cut(s) 224, 724
Eco24I GRGCYC 1 cut(s) 436
Eco31I GGTCTC 1 cut(s) 634
Eco47I GGWCC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 744
Eco88I CYCGRG 2 cut(s) 286, 333
EcoRII CCWGG 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 224, 724
EcoT22I ATGCAT 1 cut(s) 468
EcoT38I GRGCYC 1 cut(s) 436
ErhI CCWWGG 2 cut(s) 224, 724
FauI CCCGC 1 cut(s) 981
FbaI TGATCA 1 cut(s) 700
FblI GTMKAC 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 78, 990
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 2 cut(s) 78, 990
FspBI CTAG 3 cut(s) 74, 185, 887
GluI GCNGC 2 cut(s) 78, 990
GsaI CCCAGC 1 cut(s) 342
HaeIII GGCC 3 cut(s) 14, 329, 1118
HapII CCGG 1 cut(s) 475
HgaI GACGC 1 cut(s) 492
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 5 cut(s) 94, 114, 485, 521, 617
HpaII CCGG 1 cut(s) 475
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 3 cut(s) 205, 418, 871
Hpy188I TCNGA 8 cut(s) 66, 174, 255, 384, 748, 763, 829, 883
Hpy188III TCNNGA 7 cut(s) 152, 315, 547, 684, 704, 893, 1103
Hpy8I GTNNAC 3 cut(s) 205, 418, 871
Hpy99I CGWCG 1 cut(s) 1028
HpyCH4III ACNGT 2 cut(s) 10, 842
HpyCH4IV ACGT 2 cut(s) 899, 1070
HpyCH4V TGCA 6 cut(s) 80, 466, 608, 992, 1059, 1129
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 335, 821
HpyF3I CTNAG 1 cut(s) 880
HpySE526I ACGT 2 cut(s) 899, 1070
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 2 cut(s) 677, 881
Lsp1109I GCAGC 2 cut(s) 64, 976
MaeI CTAG 3 cut(s) 74, 185, 887
MaeII ACGT 2 cut(s) 899, 1070
MalI GATC 8 cut(s) 156, 231, 702, 765, 852, 885, 980, 1082
MboI GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
MfeI CAATTG 2 cut(s) 591, 641
MflI RGATCY 4 cut(s) 229, 763, 883, 1080
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 7 cut(s) 189, 591, 641, 712, 737, 938, 982
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 468
MseI TTAA 2 cut(s) 600, 669
MspI CCGG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 2 cut(s) 591, 641
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 83, 335, 821
NcoI CCATGG 2 cut(s) 224, 724
NdeII GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
NheI GCTAGC 1 cut(s) 73
NlaIV GGNNCC 1 cut(s) 87
NmeAIII GCCGAG 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 468
NspI RCATGY 1 cut(s) 1036
PaeR7I CTCGAG 1 cut(s) 333
PciI ACATGT 1 cut(s) 1032
PciSI GCTCTTC 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PfeI GAWTC 4 cut(s) 114, 485, 521, 617
PfoI TCCNGGA 1 cut(s) 103
PkrI GCNGC 2 cut(s) 79, 991
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PscI ACATGT 1 cut(s) 1032
PshBI ATTAAT 1 cut(s) 669
Psp1406I AACGTT 1 cut(s) 1070
Psp6I CCWGG 1 cut(s) 103
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 3 cut(s) 174, 327, 1117
PspXI VCTCGAGB 1 cut(s) 333
PsrI GAACNNNNNNTAC 2 cut(s) 1031, 1063
PstI CTGCAG 1 cut(s) 994
PsuI RGATCY 4 cut(s) 229, 763, 883, 1080
RsaI GTAC 7 cut(s) 275, 302, 344, 419, 473, 1031, 1040
RsaNI GTAC 7 cut(s) 274, 301, 343, 418, 472, 1030, 1039
SalI GTCGAC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 600, 669
SatI GCNGC 2 cut(s) 78, 990
Sau3AI GATC 8 cut(s) 154, 229, 700, 763, 850, 883, 978, 1080
Sau96I GGNCC 3 cut(s) 174, 327, 1117
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 436
SfcI CTRYAG 3 cut(s) 280, 421, 990
Sfr274I CTCGAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 174
SlaI CTCGAG 1 cut(s) 333
SmlI CTYRAG 3 cut(s) 333, 771, 1101
SmoI CTYRAG 3 cut(s) 333, 771, 1101
Sse9I AATT 7 cut(s) 189, 591, 641, 712, 737, 938, 982
SsiI CCGC 2 cut(s) 371, 974
SspMI CTAG 3 cut(s) 74, 185, 887
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 2 cut(s) 224, 724
TaaI ACNGT 2 cut(s) 10, 842
TaiI ACGT 2 cut(s) 902, 1073
TaqI TCGA 6 cut(s) 157, 204, 314, 334, 483, 1023
TasI AATT 7 cut(s) 189, 591, 641, 712, 737, 938, 982
TatI WGTACW 2 cut(s) 417, 1029
TfiI GAWTC 4 cut(s) 114, 485, 521, 617
Tru1I TTAA 2 cut(s) 600, 669
Tru9I TTAA 2 cut(s) 600, 669
TscAI CASTG 3 cut(s) 15, 361, 878
TseI GCWGC 2 cut(s) 77, 989
TspDTI ATGAA 5 cut(s) 144, 416, 651, 846, 1076
TspRI CASTG 3 cut(s) 15, 361, 878
VpaK11BI GGWCC 1 cut(s) 174
VspI ATTAAT 1 cut(s) 669
XapI RAATTY 1 cut(s) 737
XceI RCATGY 1 cut(s) 1036
XhoI CTCGAG 1 cut(s) 333
XmiI GTMKAC 1 cut(s) 204
XspI CTAG 3 cut(s) 74, 185, 887
Zsp2I ATGCAT 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.