AT1G54540

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014449
Physical Location & Seq
Reverse (-)
20367553 .. 20368511
959 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54540.1

Sequence Viewer

Length: 720 bp
ATGGGAGATCAACAAAAAATTCACCCGGTTCTTCAAATGGAAGCCAACAAGACGAAGACAACAACACCAGCTCCCGGAAAGACAGTCTTGCTTCCGGTTCAACGGCCGATTCCGCCTCCTGTTATTCCTAGTAAGAATCGAAATATGTGCTGCAAAATCTTTTGTTGGGTGTTAAGCCTTCTAGTCATTGCATTGATCGCGTTAGCAATTGCGGTTGCGGTTGTATACTTTGTTTTCCACCCTAAACTCCCGAGTTACGAAGTCAACAGTTTACGAGTTACCAACCTTGGAATCAATCTAGACCTCTCTCTTTCCGCGGAGTTTAAAGTCGAGATCACAGCTCGTAATCCCAACGAAAAGATTGGGATTTATTACGAGAAAGGAGGTCATATCGGTGTGTGGTACGACAAGACAAAGCTATGTGAAGGCCCTATACCGAGGTTTTATCAAGGACATCGCAATGTAACTAAACTAAATGTGGCTCTAACGGGAAGAGCGCAATATGGGAACACTGTCTTGGCGGCATTGCAGCAGCAACAACAAACAGGACGTGTACCGTTAGATCTTAAAGTGAATGCACCTGTCGCCATCAAACTCGGAAATCTGAAGATGAAGAAGATTCGGATATTGGGGAGTTGTAAGCTTGTTGTTGATAGTTTATCAACGAACAATAATATCAACATCAAAGCTAGTGATTGCAGTTTTAAGGCCAAACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

239

Amino Acids

26.38

Weight (kDa)

9.83

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 112 - 208 1.2e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AccII CGCG 2 cut(s) 200, 317
AciI CCGC 6 cut(s) 113, 212, 218, 315, 317, 521
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 626
AfaI GTAC 2 cut(s) 404, 555
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 2 cut(s) 35, 101
AjiI CACGTC 1 cut(s) 551
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 5 cut(s) 71, 341, 418, 643, 689
AluI AGCT 5 cut(s) 71, 341, 418, 643, 689
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 3 cut(s) 104, 427, 708
ApeKI GCWGC 3 cut(s) 150, 529, 532
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 2 cut(s) 26, 75
AsuHPI GGTGA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 250
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 137, 541, 544
BccI CCATC 1 cut(s) 596
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 129, 163
BcnI CCSGG 2 cut(s) 26, 75
BfaI CTAG 4 cut(s) 129, 182, 299, 690
BglII AGATCT 1 cut(s) 562
BisI GCNGC 4 cut(s) 151, 522, 530, 533
BlsI GCNGC 4 cut(s) 152, 523, 531, 534
Bme1390I CCNGG 2 cut(s) 26, 75
BmeT110I CYCGRG 1 cut(s) 250
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 2 cut(s) 26, 75
BpiI GAAGAC 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 26, 75
BsaJI CCNNGG 3 cut(s) 286, 315, 437
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 3 cut(s) 186, 466, 524
BseDI CCNNGG 3 cut(s) 286, 315, 437
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 3 cut(s) 186, 466, 524
BseX3I CGGCCG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 137, 541, 544
Bsh1236I CGCG 2 cut(s) 200, 317
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 3 cut(s) 106, 429, 710
BsiEI CGRYCG 1 cut(s) 107
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 3 cut(s) 26, 75, 95
BslI CCNNNNNNNGG 1 cut(s) 74
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 3 cut(s) 106, 429, 710
BsoBI CYCGRG 1 cut(s) 250
Bsp143I GATC 4 cut(s) 7, 195, 333, 562
BspACI CCGC 6 cut(s) 113, 212, 218, 315, 317, 521
BspANI GGCC 3 cut(s) 106, 429, 710
BspFNI CGCG 2 cut(s) 200, 317
BspQI GCTCTTC 1 cut(s) 487
BsrDI GCAATG 3 cut(s) 186, 466, 524
BssECI CCNNGG 3 cut(s) 286, 315, 437
BssMI GATC 4 cut(s) 7, 195, 333, 562
BssNAI GTATAC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 286
Bst1107I GTATAC 1 cut(s) 226
Bst4CI ACNGT 4 cut(s) 85, 269, 514, 558
Bst6I CTCTTC 1 cut(s) 487
BstDSI CCRYGG 1 cut(s) 315
BstFNI CGCG 2 cut(s) 200, 317
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 4 cut(s) 10, 198, 336, 565
BstMBI GATC 4 cut(s) 7, 195, 333, 562
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 3 cut(s) 112, 197, 584
BstSCI CCNGG 2 cut(s) 24, 73
BstUI CGCG 2 cut(s) 200, 317
BstV1I GCAGC 3 cut(s) 137, 541, 544
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 226
BstZI CGGCCG 1 cut(s) 104
BsuRI GGCC 3 cut(s) 106, 429, 710
BtgI CCRYGG 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 440
BtrI CACGTC 1 cut(s) 551
BtsIMutI CAGTG 1 cut(s) 510
CfoI GCGC 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 428
Cfr42I CCGCGG 1 cut(s) 318
Csp6I GTAC 2 cut(s) 403, 554
CviQI GTAC 2 cut(s) 403, 554
DpnI GATC 4 cut(s) 9, 197, 335, 564
DpnII GATC 4 cut(s) 7, 195, 333, 562
DraI TTTAAA 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 104
EagI CGGCCG 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
EciI GGCGGA 1 cut(s) 102
EclXI CGGCCG 1 cut(s) 104
Eco130I CCWWGG 1 cut(s) 286
Eco52I CGGCCG 1 cut(s) 104
Eco57I CTGAAG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 250
EcoO109I RGGNCCY 1 cut(s) 428
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaiI YATR 6 cut(s) 146, 226, 390, 421, 434, 504
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 151, 522, 530, 533
Fsp4HI GCNGC 4 cut(s) 151, 522, 530, 533
FspBI CTAG 4 cut(s) 129, 182, 299, 690
GlaI GCGC 1 cut(s) 498
GluI GCNGC 4 cut(s) 151, 522, 530, 533
HaeIII GGCC 3 cut(s) 106, 429, 710
HapII CCGG 3 cut(s) 26, 75, 95
HhaI GCGC 1 cut(s) 499
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 4 cut(s) 109, 136, 291, 619
HpaII CCGG 3 cut(s) 26, 75, 95
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 4 cut(s) 226, 265, 272, 554
Hpy188I TCNGA 4 cut(s) 599, 606, 624, 719
Hpy188III TCNNGA 3 cut(s) 250, 299, 331
Hpy8I GTNNAC 4 cut(s) 226, 265, 272, 554
HpyAV CCTTC 2 cut(s) 188, 419
HpyCH4III ACNGT 4 cut(s) 85, 269, 514, 558
HpyCH4IV ACGT 1 cut(s) 550
HpyCH4V TGCA 5 cut(s) 153, 191, 529, 578, 699
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 197, 584
HpySE526I ACGT 1 cut(s) 550
HspAI GCGC 1 cut(s) 497
KspI CCGCGG 1 cut(s) 318
Kzo9I GATC 4 cut(s) 7, 195, 333, 562
LguI GCTCTTC 1 cut(s) 487
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 39, 81, 88, 108, 132, 531, 594
Lsp1109I GCAGC 3 cut(s) 137, 541, 544
MaeI CTAG 4 cut(s) 129, 182, 299, 690
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 3 cut(s) 254, 277, 463
MalI GATC 4 cut(s) 9, 197, 335, 564
MboI GATC 4 cut(s) 7, 195, 333, 562
MboII GAAGA 6 cut(s) 23, 67, 504, 619, 625, 628
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 1 cut(s) 562
MluCI AATT 2 cut(s) 18, 207
MnlI CCTC 4 cut(s) 126, 314, 377, 432
MseI TTAA 4 cut(s) 173, 324, 567, 705
MslI CAYNNNNRTG 2 cut(s) 393, 459
MspA1I CMGCKG 1 cut(s) 317
MspI CCGG 3 cut(s) 26, 75, 95
MspR9I CCNGG 2 cut(s) 26, 75
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 580
MvnI CGCG 2 cut(s) 200, 317
MwoI GCNNNNNNNGC 3 cut(s) 112, 197, 584
NciI CCSGG 2 cut(s) 26, 75
NdeII GATC 4 cut(s) 7, 195, 333, 562
PciSI GCTCTTC 1 cut(s) 487
PctI GAATGC 1 cut(s) 580
PfeI GAWTC 4 cut(s) 109, 136, 291, 619
PfoI TCCNGGA 1 cut(s) 73
PkrI GCNGC 4 cut(s) 152, 523, 531, 534
PspPI GGNCC 1 cut(s) 428
PsuI RGATCY 1 cut(s) 562
RsaI GTAC 2 cut(s) 404, 555
RsaNI GTAC 2 cut(s) 403, 554
RseI CAYNNNNRTG 2 cut(s) 393, 459
SacII CCGCGG 1 cut(s) 318
SapI GCTCTTC 1 cut(s) 487
SaqAI TTAA 4 cut(s) 173, 324, 567, 705
SatI GCNGC 4 cut(s) 151, 522, 530, 533
Sau3AI GATC 4 cut(s) 7, 195, 333, 562
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 2 cut(s) 26, 75
Sfr303I CCGCGG 1 cut(s) 318
SgrBI CCGCGG 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 393, 459
Sse9I AATT 2 cut(s) 18, 207
SsiI CCGC 6 cut(s) 113, 212, 218, 315, 317, 521
SspMI CTAG 4 cut(s) 129, 182, 299, 690
StyD4I CCNGG 2 cut(s) 24, 73
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 4 cut(s) 85, 269, 514, 558
TaiI ACGT 1 cut(s) 553
TaqI TCGA 2 cut(s) 139, 330
TasI AATT 2 cut(s) 18, 207
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 4 cut(s) 109, 136, 291, 619
Tru1I TTAA 4 cut(s) 173, 324, 567, 705
Tru9I TTAA 4 cut(s) 173, 324, 567, 705
TscAI CASTG 1 cut(s) 517
TseI GCWGC 3 cut(s) 150, 529, 532
TspDTI ATGAA 1 cut(s) 626
TspRI CASTG 1 cut(s) 517
XapI RAATTY 1 cut(s) 18
XbaI TCTAGA 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 4 cut(s) 129, 182, 299, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.