Rw7G000120

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014449
Physical Location & Seq
Forward (+)
171566 .. 172396
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000120.1

Sequence Viewer

Length: 831 bp
ATGGCTGATCATCAAAGAATTCATCCTGCTGTGGATGTGGAGGCGCCACCACCATCAGTGCCGCCTATGGTGCCTCATGGACACCAGAGTTCTTCAACAATTACACACAAAGAGATGAAAGAGAGAGGTATAGGTACTAGTCCAGTTGATCAACAGCATCGCCCTCCATTAGGTTTAAGACCATCACAAGTTGCGCGTGCCATTCCGGTAATCCCTGCAGAGCCGGAGCAACCAGAAAAGAGGAGCTCATCATCTACTTATTGCAGATGTATGTGTTGGGCACTGAGCATCCTTCTCCTTGTATTGATCACAATAGGAGCCACCGGTGGAATACTTTATATTATCTTCCGCCCGAAACTTCCAAGCTACTCTGTTAATAGCTTGAAGATAAGCGATTTAAGGCTCAAATTGGACATGAGCCTATATGCCGAATTCGATGTTAAGATAACAGCTAACAACCCAAACAAGAAGATTGGGATTTATTATGAGCAAGGTGGCCGGTTGAGCGTGTGGTATATAAACATGAGGCTTTGTGAAGGGGCACTGCCAAAGTTTTACCAAGGTCACCAGAACAAAACAGTACTCAATGTGGTCTTGACGGGCCAAAACCAATACGGAAACACATTGATGAATGCACTGCAACAGCAACAACAAACTGGAAGCATCCCCTTGGATCTTAAGGTTGATGCACCGGTAGCAATTCAAGTGGGGACACTGAAGCTCAGGAAGGTCAGGATACTGGGGCAGTGTTTGTTGGTTGTGGATAGCCTCACCGCTAATAATTTCATTAGCATAAAAGCTAATAATTGTAGATTTAGATTGAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

276

Amino Acids

30.64

Weight (kDa)

9.6

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 149 - 244 5.3e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 70
AccII CGCG 1 cut(s) 196
AciI CCGC 3 cut(s) 62, 349, 774
AclWI GGATC 1 cut(s) 681
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 2 cut(s) 18, 431
AcuI CTGAAG 1 cut(s) 737
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 136, 582
AfiI CCNNNNNNNGG 1 cut(s) 170
AflII CTTAAG 1 cut(s) 677
AgeI ACCGGT 2 cut(s) 323, 691
AgsI TTSAA 4 cut(s) 96, 385, 704, 823
AhlI ACTAGT 1 cut(s) 137
AluBI AGCT 6 cut(s) 246, 366, 381, 452, 721, 800
AluI AGCT 6 cut(s) 246, 366, 381, 452, 721, 800
Alw21I GWGCWC 1 cut(s) 248
AlwI GGATC 1 cut(s) 681
AoxI GGCC 2 cut(s) 496, 601
ApoI RAATTY 2 cut(s) 18, 431
AsiGI ACCGGT 2 cut(s) 323, 691
AspLEI GCGC 2 cut(s) 46, 196
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 2 cut(s) 557, 763
BaeGI GKGCMC 2 cut(s) 283, 544
BanI GGYRCC 2 cut(s) 43, 70
BanII GRGCYC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 248
BccI CCATC 2 cut(s) 61, 190
BciVI GTATCC 1 cut(s) 729
BclI TGATCA 3 cut(s) 7, 148, 306
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 677
BfuI GTATCC 1 cut(s) 729
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmcAI AGTACT 1 cut(s) 582
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 3 cut(s) 45, 72, 319
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 4 cut(s) 166, 297, 672, 676
BmuI ACTGGG 1 cut(s) 749
Bpu10I CCTNAGC 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 559, 669
BsaWI WCCGGW 3 cut(s) 205, 323, 691
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse118I RCCGGY 3 cut(s) 323, 498, 691
Bse1I ACTGG 3 cut(s) 143, 661, 744
BseDI CCNNGG 2 cut(s) 559, 669
BseGI GGATG 4 cut(s) 22, 40, 288, 663
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMII CTCAG 2 cut(s) 275, 736
BseNI ACTGG 3 cut(s) 143, 661, 744
BseRI GAGGAG 1 cut(s) 256
BseSI GKGCMC 2 cut(s) 283, 544
Bsh1236I CGCG 1 cut(s) 196
BshFI GGCC 2 cut(s) 498, 603
BshNI GGYRCC 2 cut(s) 43, 70
BshTI ACCGGT 2 cut(s) 323, 691
BsiHKAI GWGCWC 1 cut(s) 248
BsiSI CCGG 5 cut(s) 206, 224, 324, 499, 692
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 724
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 2 cut(s) 498, 603
Bsp1286I GDGCHC 3 cut(s) 248, 283, 544
Bsp143I GATC 4 cut(s) 7, 148, 306, 673
BspACI CCGC 3 cut(s) 62, 349, 774
BspANI GGCC 2 cut(s) 498, 603
BspCNI CTCAG 2 cut(s) 276, 735
BspFNI CGCG 1 cut(s) 196
BspLI GGNNCC 3 cut(s) 45, 72, 319
BspMAI CTGCAG 1 cut(s) 220
BspPI GGATC 1 cut(s) 681
BspT107I GGYRCC 2 cut(s) 43, 70
BspTI CTTAAG 1 cut(s) 677
BsrFI RCCGGY 3 cut(s) 323, 498, 691
BsrI ACTGG 3 cut(s) 143, 661, 744
BssAI RCCGGY 3 cut(s) 323, 498, 691
BssECI CCNNGG 2 cut(s) 559, 669
BssMI GATC 4 cut(s) 7, 148, 306, 673
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 559, 669
Bst4CI ACNGT 1 cut(s) 580
BstACI GRCGYC 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 677
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 284, 722
BstEII GGTNACC 1 cut(s) 563
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 4 cut(s) 22, 40, 288, 663
BstFNI CGCG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 196
BstKTI GATC 4 cut(s) 10, 151, 309, 676
BstMBI GATC 4 cut(s) 7, 148, 306, 673
BstMWI GCNNNNNNNGC 3 cut(s) 70, 504, 695
BstPI GGTNACC 1 cut(s) 563
BstSFI CTRYAG 1 cut(s) 216
BstSLI GKGCMC 2 cut(s) 283, 544
BstUI CGCG 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 673
BstYI RGATCY 1 cut(s) 673
BsuI GTATCC 1 cut(s) 729
BsuRI GGCC 2 cut(s) 498, 603
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 4 cut(s) 22, 40, 288, 663
BtsI GCAGTG 3 cut(s) 542, 635, 752
BtsIMutI CAGTG 6 cut(s) 63, 281, 542, 635, 713, 752
Cac8I GCNNGC 1 cut(s) 198
CfoI GCGC 2 cut(s) 46, 196
Cfr10I RCCGGY 3 cut(s) 323, 498, 691
Cfr13I GGNCC 1 cut(s) 601
Csp6I GTAC 2 cut(s) 135, 581
CspAI ACCGGT 2 cut(s) 323, 691
CspCI CAANNNNNGTGG 2 cut(s) 687, 722
CviAII CATG 3 cut(s) 77, 415, 523
CviQI GTAC 2 cut(s) 135, 581
DdeI CTNAG 2 cut(s) 284, 722
DinI GGCGCC 1 cut(s) 45
DpnI GATC 4 cut(s) 9, 150, 308, 675
DpnII GATC 4 cut(s) 7, 148, 306, 673
EaeI YGGCCR 1 cut(s) 496
EciI GGCGGA 1 cut(s) 338
Ecl136II GAGCTC 1 cut(s) 246
Eco130I CCWWGG 2 cut(s) 559, 669
Eco24I GRGCYC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 563
EcoICRI GAGCTC 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoO65I GGTNACC 1 cut(s) 563
EcoRI GAATTC 2 cut(s) 18, 431
EcoT14I CCWWGG 2 cut(s) 559, 669
EcoT38I GRGCYC 1 cut(s) 248
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
ErhI CCWWGG 2 cut(s) 559, 669
FaeI CATG 3 cut(s) 80, 418, 526
FaqI GGGAC 1 cut(s) 724
FatI CATG 3 cut(s) 76, 414, 522
FbaI TGATCA 3 cut(s) 7, 148, 306
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 4 cut(s) 9, 47, 275, 650
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 1 cut(s) 138
GlaI GCGC 2 cut(s) 45, 195
GluI GCNGC 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 2 cut(s) 498, 603
HapII CCGG 5 cut(s) 206, 224, 324, 499, 692
HhaI GCGC 2 cut(s) 46, 196
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 3 cut(s) 80, 418, 526
Hin6I GCGC 2 cut(s) 44, 194
HinP1I GCGC 2 cut(s) 44, 194
HpaII CCGG 5 cut(s) 206, 224, 324, 499, 692
HphI GGTGA 2 cut(s) 557, 763
Hpy188III TCNNGA 3 cut(s) 595, 724, 733
HpyAV CCTTC 3 cut(s) 302, 530, 721
HpyCH4III ACNGT 1 cut(s) 580
HpyCH4V TGCA 5 cut(s) 218, 264, 635, 640, 689
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 504, 695
HpyF3I CTNAG 2 cut(s) 284, 722
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 80, 418, 526
HspAI GCGC 2 cut(s) 44, 194
KasI GGCGCC 1 cut(s) 43
Ksp22I TGATCA 3 cut(s) 7, 148, 306
Kzo9I GATC 4 cut(s) 7, 148, 306, 673
LmnI GCTCC 3 cut(s) 226, 243, 317
LweI GCATC 4 cut(s) 166, 297, 672, 676
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 563
MalI GATC 4 cut(s) 9, 150, 308, 675
MboI GATC 4 cut(s) 7, 148, 306, 673
MboII GAAGA 4 cut(s) 84, 337, 397, 481
MflI RGATCY 1 cut(s) 673
MhlI GDGCHC 3 cut(s) 248, 283, 544
MluCI AATT 7 cut(s) 18, 99, 407, 431, 699, 781, 805
Mly113I GGCGCC 1 cut(s) 44
MnlI CCTC 7 cut(s) 34, 84, 119, 174, 234, 519, 779
MseI TTAA 5 cut(s) 176, 375, 398, 441, 678
MslI CAYNNNNRTG 1 cut(s) 626
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 5 cut(s) 206, 224, 324, 499, 692
Mva1269I GAATGC 1 cut(s) 637
MvnI CGCG 1 cut(s) 196
MwoI GCNNNNNNNGC 3 cut(s) 70, 504, 695
NarI GGCGCC 1 cut(s) 44
NdeII GATC 4 cut(s) 7, 148, 306, 673
NlaIII CATG 3 cut(s) 80, 418, 526
NlaIV GGNNCC 3 cut(s) 45, 72, 319
NmuCI GTSAC 1 cut(s) 563
PctI GAATGC 1 cut(s) 637
PinAI ACCGGT 2 cut(s) 323, 691
PkrI GCNGC 1 cut(s) 63
PluTI GGCGCC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 563
PspN4I GGNNCC 3 cut(s) 45, 72, 319
PspPI GGNCC 1 cut(s) 601
PstI CTGCAG 1 cut(s) 220
PsuI RGATCY 1 cut(s) 673
RsaI GTAC 2 cut(s) 136, 582
RsaNI GTAC 2 cut(s) 135, 581
RseI CAYNNNNRTG 1 cut(s) 626
SacI GAGCTC 1 cut(s) 248
SaqAI TTAA 5 cut(s) 176, 375, 398, 441, 678
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 4 cut(s) 7, 148, 306, 673
Sau96I GGNCC 1 cut(s) 601
ScaI AGTACT 1 cut(s) 582
SduI GDGCHC 3 cut(s) 248, 283, 544
SfaNI GCATC 4 cut(s) 166, 297, 672, 676
SfcI CTRYAG 1 cut(s) 216
SfoI GGCGCC 1 cut(s) 45
SgrAI CRCCGGYG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 7 cut(s) 18, 99, 407, 431, 699, 781, 805
SsiI CCGC 3 cut(s) 62, 349, 774
SspDI GGCGCC 1 cut(s) 43
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 248
StyI CCWWGG 2 cut(s) 559, 669
TaaI ACNGT 1 cut(s) 580
TaqI TCGA 1 cut(s) 435
TasI AATT 7 cut(s) 18, 99, 407, 431, 699, 781, 805
TatI WGTACW 1 cut(s) 580
TauI GCSGC 1 cut(s) 64
Tru1I TTAA 5 cut(s) 176, 375, 398, 441, 678
Tru9I TTAA 5 cut(s) 176, 375, 398, 441, 678
TscAI CASTG 6 cut(s) 63, 288, 549, 642, 720, 752
TseFI GTSAC 1 cut(s) 563
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 4 cut(s) 11, 131, 644, 775
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 6 cut(s) 63, 288, 549, 642, 720, 752
Vha464I CTTAAG 1 cut(s) 677
XagI CCTNNNNNAGG 1 cut(s) 168
XapI RAATTY 2 cut(s) 18, 431
XspI CTAG 1 cut(s) 138
ZrmI AGTACT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.