Prupe.5G245100_v2.0.a1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0014449
Physical Location & Seq
Reverse (-)
18354858 .. 18355715
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G245100.1

Sequence Viewer

Length: 858 bp
ATGGGTGATCATCAGAGAGTTCATCCTGCTGGGGATGTGGAAGCGCCACCCACCACCGTGTCTGCGCCTCTGGCAGTGCCACAGCCACAGGGACACCGGCACGGTTCATCAATAACAACAACAACAGAGAAAGAAAAGTTTGATAAAGATCAGAAAGAGGAGATTGATCAGCAGGAGCATCACCCTTTACAAATACAAGCACGTAGTAGCCTTCCGGTTAATATCCATGCGAAGAAGCCACCAACAAATTTAAAGAGAAGCACAAGCACATGTTCATGTACTTGTTGGAGCAGGTGCATGTATTGCACAATAGGCATCCTTGTCTTTGTATTCATCATAATAGGAGCCACTGCTGGCCTTCTCTACCTTATCTTCCATCCAAAACTTCCAAATTACTCGGTTGATAGCTTGAAAATAAGCGATCTAAGGCTCAATTTGGACATGACTCTATATGCTAAATTTGACGTGAAGATAACAGCCAATAACCCAAATAAAAAGATCGGAATTCACTACGAGCAAGGTGGCCGGTTGAGCGTGTGGTATACAAACATGAAGCTTTGCCAAGGGACACTGCCAAAGTTTTACCAAGGTCACCAGAACAAAACACTACTCAACGTGGCCTTGACCGGCCAAACACAGTACGGAAACACTTTGATGAATGCACTGCAACAGCAACAACAAACCGGACGCATCCCCTTGGATCTTAAGGTTGATGCACCCGTAGCAATCCAACTCGGGAGATTGAAGCTCAGGAAGGTAAGGATCTTGGGGGAATGCTTGTTGGTGGTGGATAGCTTAACTGCTAATAACTTGATTAGCATTAAAGCTAATAATTGTAGATTTAGATTGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

286

Amino Acids

31.88

Weight (kDa)

9.49

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 282
Acc36I ACCTGC 1 cut(s) 282
AccI GTMKAC 1 cut(s) 542
AclWI GGATC 2 cut(s) 708, 770
AcoI YGGCCR 2 cut(s) 523, 628
AcsI RAATTY 3 cut(s) 247, 458, 504
AfaI GTAC 2 cut(s) 280, 641
AflII CTTAAG 1 cut(s) 704
AflIII ACRYGT 1 cut(s) 269
AgsI TTSAA 3 cut(s) 412, 745, 850
AjiI CACGTC 1 cut(s) 466
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 6 cut(s) 408, 556, 748, 795, 827, 853
AluI AGCT 6 cut(s) 408, 556, 748, 795, 827, 853
AlwI GGATC 2 cut(s) 708, 770
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 4 cut(s) 355, 523, 618, 628
ApoI RAATTY 3 cut(s) 247, 458, 504
AspLEI GCGC 2 cut(s) 46, 67
AsuHPI GGTGA 3 cut(s) 17, 173, 584
AvaI CYCGRG 1 cut(s) 734
BccI CCATC 1 cut(s) 384
BclI TGATCA 2 cut(s) 7, 166
BfoI RGCGCY 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 704
BfuAI ACCTGC 1 cut(s) 282
BmeT110I CYCGRG 1 cut(s) 734
BmgBI CACGTC 1 cut(s) 466
BmiI GGNNCC 1 cut(s) 346
BmsI GCATC 4 cut(s) 187, 324, 699, 703
Bpu10I CCTNAGC 1 cut(s) 749
BsaAI YACGTR 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 562, 586, 696
BsaWI WCCGGW 2 cut(s) 214, 683
Bse118I RCCGGY 3 cut(s) 96, 525, 626
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 562, 586, 696
BseGI GGATG 5 cut(s) 22, 40, 315, 376, 690
BseJI GATNNNNATC 1 cut(s) 147
BseMII CTCAG 1 cut(s) 763
BseRI GAGGAG 1 cut(s) 173
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 4 cut(s) 357, 525, 620, 630
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 5 cut(s) 97, 215, 526, 627, 684
BslFI GGGAC 2 cut(s) 105, 580
BsmFI GGGAC 2 cut(s) 105, 580
BsmI GAATGC 2 cut(s) 664, 779
BsnI GGCC 4 cut(s) 357, 525, 620, 630
BsoBI CYCGRG 1 cut(s) 734
Bsp143I GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
BspANI GGCC 4 cut(s) 357, 525, 620, 630
BspCNI CTCAG 1 cut(s) 762
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 2 cut(s) 708, 770
BspTI CTTAAG 1 cut(s) 704
BsrFI RCCGGY 3 cut(s) 96, 525, 626
BssAI RCCGGY 3 cut(s) 96, 525, 626
BssECI CCNNGG 3 cut(s) 562, 586, 696
BssMI GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
BssNAI GTATAC 1 cut(s) 543
BssT1I CCWWGG 3 cut(s) 562, 586, 696
Bst1107I GTATAC 1 cut(s) 543
Bst4CI ACNGT 3 cut(s) 58, 104, 639
BstAFI CTTAAG 1 cut(s) 704
BstAPI GCANNNNNTGC 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 425, 749
BstEII GGTNACC 1 cut(s) 590
BstF5I GGATG 5 cut(s) 22, 40, 315, 376, 690
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 67
BstKTI GATC 7 cut(s) 10, 151, 169, 424, 501, 703, 765
BstMBI GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
BstMWI GCNNNNNNNGC 5 cut(s) 71, 303, 312, 531, 722
BstNSI RCATGY 2 cut(s) 273, 301
BstPI GGTNACC 1 cut(s) 590
BstX2I RGATCY 2 cut(s) 700, 762
BstYI RGATCY 2 cut(s) 700, 762
BstZ17I GTATAC 1 cut(s) 543
BsuRI GGCC 4 cut(s) 357, 525, 620, 630
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 5 cut(s) 22, 40, 315, 376, 690
BtsI GCAGTG 4 cut(s) 81, 348, 569, 662
BtsIMutI CAGTG 4 cut(s) 81, 348, 569, 662
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 2 cut(s) 46, 67
Cfr10I RCCGGY 3 cut(s) 96, 525, 626
CseI GACGC 1 cut(s) 696
Csp6I GTAC 2 cut(s) 279, 640
CviAII CATG 6 cut(s) 227, 270, 276, 298, 442, 550
CviQI GTAC 2 cut(s) 279, 640
DdeI CTNAG 2 cut(s) 425, 749
DpnI GATC 7 cut(s) 9, 150, 168, 423, 500, 702, 764
DpnII GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
DraI TTTAAA 1 cut(s) 252
EaeI YGGCCR 2 cut(s) 523, 628
Eco130I CCWWGG 3 cut(s) 562, 586, 696
Eco88I CYCGRG 1 cut(s) 734
Eco91I GGTNACC 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 504
EcoT14I CCWWGG 3 cut(s) 562, 586, 696
ErhI CCWWGG 3 cut(s) 562, 586, 696
FaeI CATG 6 cut(s) 230, 273, 279, 301, 445, 553
FaqI GGGAC 2 cut(s) 105, 580
FatI CATG 6 cut(s) 226, 269, 275, 297, 441, 549
FbaI TGATCA 2 cut(s) 7, 166
FblI GTMKAC 1 cut(s) 542
FokI GGATG 5 cut(s) 9, 47, 302, 363, 677
GlaI GCGC 2 cut(s) 45, 66
GsaI CCCAGC 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 4 cut(s) 357, 525, 620, 630
HapII CCGG 5 cut(s) 97, 215, 526, 627, 684
HgaI GACGC 1 cut(s) 696
HhaI GCGC 2 cut(s) 46, 67
Hin1II CATG 6 cut(s) 230, 273, 279, 301, 445, 553
Hin6I GCGC 2 cut(s) 44, 65
HinP1I GCGC 2 cut(s) 44, 65
HindIII AAGCTT 2 cut(s) 554, 851
HinfI GANTC 1 cut(s) 445
HpaII CCGG 5 cut(s) 97, 215, 526, 627, 684
HphI GGTGA 3 cut(s) 17, 173, 584
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 3 cut(s) 15, 153, 503
Hpy188III TCNNGA 2 cut(s) 736, 751
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 3 cut(s) 221, 368, 748
HpyCH4III ACNGT 3 cut(s) 58, 104, 639
HpyCH4IV ACGT 3 cut(s) 202, 465, 615
HpyCH4V TGCA 5 cut(s) 297, 306, 662, 667, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 303, 312, 531, 722
HpyF3I CTNAG 2 cut(s) 425, 749
HpySE526I ACGT 3 cut(s) 202, 465, 615
Hsp92II CATG 6 cut(s) 230, 273, 279, 301, 445, 553
HspAI GCGC 2 cut(s) 44, 65
Ksp22I TGATCA 2 cut(s) 7, 166
Kzo9I GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
LmnI GCTCC 3 cut(s) 175, 288, 344
LweI GCATC 4 cut(s) 187, 324, 699, 703
MaeII ACGT 3 cut(s) 202, 465, 615
MaeIII GTNAC 1 cut(s) 590
MalI GATC 7 cut(s) 9, 150, 168, 423, 500, 702, 764
MboI GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
MboII GAAGA 3 cut(s) 244, 364, 481
MflI RGATCY 2 cut(s) 700, 762
MluCI AATT 6 cut(s) 247, 391, 433, 458, 504, 832
MlyI GAGTC 1 cut(s) 439
MmeI TCCRAC 2 cut(s) 266, 754
MnlI CCTC 2 cut(s) 78, 151
MseI TTAA 5 cut(s) 219, 251, 705, 797, 822
MslI CAYNNNNRTG 3 cut(s) 56, 274, 653
MspCI CTTAAG 1 cut(s) 704
MspI CCGG 5 cut(s) 97, 215, 526, 627, 684
Mva1269I GAATGC 2 cut(s) 664, 779
MwoI GCNNNNNNNGC 5 cut(s) 71, 303, 312, 531, 722
NdeII GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
NlaIII CATG 6 cut(s) 230, 273, 279, 301, 445, 553
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 2 cut(s) 273, 301
OliI CACNNNNGTG 1 cut(s) 56
PaqCI CACCTGC 1 cut(s) 282
PciI ACATGT 1 cut(s) 269
PctI GAATGC 2 cut(s) 664, 779
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
Ppu21I YACGTR 1 cut(s) 203
PscI ACATGT 1 cut(s) 269
PspEI GGTNACC 1 cut(s) 590
PspFI CCCAGC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 346
PsuI RGATCY 2 cut(s) 700, 762
RsaI GTAC 2 cut(s) 280, 641
RsaNI GTAC 2 cut(s) 279, 640
RseI CAYNNNNRTG 3 cut(s) 56, 274, 653
SaqAI TTAA 5 cut(s) 219, 251, 705, 797, 822
Sau3AI GATC 7 cut(s) 7, 148, 166, 421, 498, 700, 762
SchI GAGTC 1 cut(s) 439
SfaNI GCATC 4 cut(s) 187, 324, 699, 703
SmiMI CAYNNNNRTG 3 cut(s) 56, 274, 653
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
Sse9I AATT 6 cut(s) 247, 391, 433, 458, 504, 832
StyI CCWWGG 3 cut(s) 562, 586, 696
TaaI ACNGT 3 cut(s) 58, 104, 639
TaiI ACGT 3 cut(s) 205, 468, 618
TasI AATT 6 cut(s) 247, 391, 433, 458, 504, 832
TatI WGTACW 1 cut(s) 278
Tru1I TTAA 5 cut(s) 219, 251, 705, 797, 822
Tru9I TTAA 5 cut(s) 219, 251, 705, 797, 822
TscAI CASTG 4 cut(s) 81, 355, 576, 669
TseFI GTSAC 1 cut(s) 590
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 6 cut(s) 11, 96, 264, 322, 566, 671
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 4 cut(s) 81, 355, 576, 669
Vha464I CTTAAG 1 cut(s) 704
XapI RAATTY 3 cut(s) 247, 458, 504
XceI RCATGY 2 cut(s) 273, 301
XmiI GTMKAC 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.