Rroxscaffold_3G00276230

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014449
Physical Location & Seq
Reverse (-)
67482375 .. 67483612
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276230.1

Sequence Viewer

Length: 843 bp
ATGGCTGATCATCAAAGAATTCATCCTGCTGTGGACGTGGAGGCGCCACCACCATCACCAACAGTGCCGCCTATGGTGCCTCATGAACACCAGAGTTCTTCAACAATTACACAAAAAGAGACGAAAGAGAGAGCTAGTCCAGTTGATCAACAGCATCGCCCTCCATTAGGTTTAAGACCATCACAAGTTGCGCGTGCCATTCCGGTAATCCCTGCAGAGCCGGAGCAACCAGAAAAGAGGAGCTCATCATCTACTTGTTGCAGATGTATGTGTTGGGCGCTGAGCATCCTTCTCCTTGTATTGATCACAATAGGAGCCACCGGTGCAATACTTTATATTATCTTCCGCCCGAAACTTCCAAGCTACTCTGTTAATAGCTTGAAGATAAGCGATTTAAGGCTCAAATTGGACATGAGCCTATATGCCGAATTCGATGTTAAGATAACAGCTAACAACCCAAACAAGAAGATTGGGATTTATTATGAGCAAGGTGGCCGGTTGAGCGTGTGGTATACAAACATGAGGCTTTGTGAAGGGGCACTGCCAAAGTTTTACCAAGGTCACCAGAACAAAACAGTACTCAATGTGGTCTTGACGGGCCAAAACCAATATGGAAACACACTGATGAATGCACTACAACAGCAACAACAAACTGGAAGCATCCCCTTGGATCTTAAGGTTGATGCACCGGTAGCAATTCAACTGGGGACACTGAAGCTCAGGAAGGAGCAAAACTCTAGGCTTTCTGACTATTTCAAGTTCCAGCTGATCCAGCAGGACAGTTTGAAAATGCCACAACCTGTAATCAAGCAGATCTTCAGTGATCAAAATGGCCCTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

280

Amino Acids

31.33

Weight (kDa)

9.24

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 148 - 231 5.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 841
AccB1I GGYRCC 2 cut(s) 43, 76
AccI GTMKAC 1 cut(s) 512
AccII CGCG 1 cut(s) 193
AciI CCGC 2 cut(s) 68, 346
AclWI GGATC 2 cut(s) 678, 763
AcoI YGGCCR 1 cut(s) 493
AcsI RAATTY 2 cut(s) 18, 428
AcuI CTGAAG 2 cut(s) 734, 802
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 167
AflII CTTAAG 1 cut(s) 674
AgeI ACCGGT 2 cut(s) 320, 688
AgsI TTSAA 5 cut(s) 102, 382, 701, 757, 787
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 7 cut(s) 134, 243, 363, 378, 449, 718, 766
AluI AGCT 7 cut(s) 134, 243, 363, 378, 449, 718, 766
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 1 cut(s) 113
AlwI GGATC 2 cut(s) 678, 763
AoxI GGCC 3 cut(s) 493, 598, 832
ApoI RAATTY 2 cut(s) 18, 428
AsiGI ACCGGT 2 cut(s) 320, 688
AspLEI GCGC 3 cut(s) 46, 193, 280
AspS9I GGNCC 2 cut(s) 598, 833
AsuHPI GGTGA 2 cut(s) 48, 554
BaeGI GKGCMC 1 cut(s) 541
BanI GGYRCC 2 cut(s) 43, 76
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 245
BccI CCATC 2 cut(s) 61, 187
BclI TGATCA 4 cut(s) 7, 145, 303, 823
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 135, 738
BfmI CTRYAG 1 cut(s) 213
BfoI RGCGCY 2 cut(s) 47, 281
BfrI CTTAAG 1 cut(s) 674
BglII AGATCT 1 cut(s) 813
BisI GCNGC 1 cut(s) 68
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 69
BmcAI AGTACT 1 cut(s) 579
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 2 cut(s) 598, 833
BmiI GGNNCC 3 cut(s) 45, 78, 316
BmrI ACTGGG 1 cut(s) 713
BmsI GCATC 4 cut(s) 163, 294, 669, 673
BmuI ACTGGG 1 cut(s) 713
BplI GAGNNNNNCTC 2 cut(s) 719, 751
Bpu10I CCTNAGC 1 cut(s) 719
Bpu1102I GCTNAGC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 556, 666
BsaWI WCCGGW 3 cut(s) 202, 320, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse118I RCCGGY 3 cut(s) 320, 495, 688
Bse1I ACTGG 3 cut(s) 140, 658, 708
BseDI CCNNGG 2 cut(s) 556, 666
BseGI GGATG 3 cut(s) 22, 285, 660
BseLI CCNNNNNNNGG 1 cut(s) 167
BseMII CTCAG 2 cut(s) 272, 733
BseNI ACTGG 3 cut(s) 140, 658, 708
BseRI GAGGAG 1 cut(s) 253
BseSI GKGCMC 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 3 cut(s) 495, 600, 834
BshNI GGYRCC 2 cut(s) 43, 76
BshTI ACCGGT 2 cut(s) 320, 688
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 5 cut(s) 203, 221, 321, 496, 689
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 113
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 634
BsnI GGCC 3 cut(s) 495, 600, 834
Bsp1286I GDGCHC 2 cut(s) 245, 541
Bsp143I GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
Bsp1720I GCTNAGC 1 cut(s) 281
BspACI CCGC 2 cut(s) 68, 346
BspANI GGCC 3 cut(s) 495, 600, 834
BspCNI CTCAG 2 cut(s) 273, 732
BspFNI CGCG 1 cut(s) 193
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 3 cut(s) 45, 78, 316
BspMAI CTGCAG 1 cut(s) 217
BspPI GGATC 2 cut(s) 678, 763
BspT107I GGYRCC 2 cut(s) 43, 76
BspTI CTTAAG 1 cut(s) 674
BsrFI RCCGGY 3 cut(s) 320, 495, 688
BsrI ACTGG 3 cut(s) 140, 658, 708
BssAI RCCGGY 3 cut(s) 320, 495, 688
BssECI CCNNGG 2 cut(s) 556, 666
BssMI GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
BssNAI GTATAC 1 cut(s) 513
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 556, 666
Bst1107I GTATAC 1 cut(s) 513
Bst4CI ACNGT 3 cut(s) 64, 577, 782
BstACI GRCGYC 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 674
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 281, 719
BstEII GGTNACC 1 cut(s) 560
BstENI CCTNNNNNAGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 22, 285, 660
BstFNI CGCG 1 cut(s) 193
BstH2I RGCGCY 2 cut(s) 47, 281
BstHHI GCGC 3 cut(s) 46, 193, 280
BstKTI GATC 7 cut(s) 10, 148, 306, 673, 771, 816, 826
BstMAI GTCTC 1 cut(s) 113
BstMBI GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
BstMWI GCNNNNNNNGC 5 cut(s) 76, 323, 501, 692, 772
BstPI GGTNACC 1 cut(s) 560
BstSFI CTRYAG 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 541
BstUI CGCG 1 cut(s) 193
BstX2I RGATCY 2 cut(s) 670, 813
BstYI RGATCY 2 cut(s) 670, 813
BstZ17I GTATAC 1 cut(s) 513
BsuRI GGCC 3 cut(s) 495, 600, 834
BtgZI GCGATG 1 cut(s) 140
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 3 cut(s) 22, 285, 660
BtsI GCAGTG 1 cut(s) 539
BtsIMutI CAGTG 5 cut(s) 69, 539, 620, 710, 826
Cac8I GCNNGC 1 cut(s) 195
CciI TCATGA 1 cut(s) 82
CfoI GCGC 3 cut(s) 46, 193, 280
Cfr10I RCCGGY 3 cut(s) 320, 495, 688
Cfr13I GGNCC 2 cut(s) 598, 833
Csp6I GTAC 1 cut(s) 578
CspAI ACCGGT 2 cut(s) 320, 688
CviAII CATG 3 cut(s) 83, 412, 520
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 2 cut(s) 281, 719
DinI GGCGCC 1 cut(s) 45
DpnI GATC 7 cut(s) 9, 147, 305, 672, 770, 815, 825
DpnII GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
EaeI YGGCCR 1 cut(s) 493
EciI GGCGGA 1 cut(s) 335
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 556, 666
Eco24I GRGCYC 1 cut(s) 245
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 734, 802
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 243
EcoNI CCTNNNNNAGG 1 cut(s) 165
EcoO65I GGTNACC 1 cut(s) 560
EcoRI GAATTC 2 cut(s) 18, 428
EcoT14I CCWWGG 2 cut(s) 556, 666
EcoT38I GRGCYC 1 cut(s) 245
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
ErhI CCWWGG 2 cut(s) 556, 666
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 3 cut(s) 86, 415, 523
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 1 cut(s) 721
FatI CATG 3 cut(s) 82, 411, 519
FbaI TGATCA 4 cut(s) 7, 145, 303, 823
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 3 cut(s) 9, 272, 647
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 2 cut(s) 135, 738
GlaI GCGC 3 cut(s) 45, 192, 279
GluI GCNGC 1 cut(s) 68
HaeII RGCGCY 2 cut(s) 47, 281
HaeIII GGCC 3 cut(s) 495, 600, 834
HapII CCGG 5 cut(s) 203, 221, 321, 496, 689
HhaI GCGC 3 cut(s) 46, 193, 280
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 3 cut(s) 86, 415, 523
Hin6I GCGC 3 cut(s) 44, 191, 278
HinP1I GCGC 3 cut(s) 44, 191, 278
HpaII CCGG 5 cut(s) 203, 221, 321, 496, 689
HphI GGTGA 2 cut(s) 48, 554
Hpy166II GTNNAC 2 cut(s) 34, 513
Hpy188I TCNGA 1 cut(s) 748
Hpy188III TCNNGA 3 cut(s) 83, 592, 721
Hpy8I GTNNAC 2 cut(s) 34, 513
HpyAV CCTTC 3 cut(s) 299, 527, 718
HpyCH4III ACNGT 3 cut(s) 64, 577, 782
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 5 cut(s) 215, 261, 326, 632, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 323, 501, 692, 772
HpyF3I CTNAG 2 cut(s) 281, 719
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 86, 415, 523
HspAI GCGC 3 cut(s) 44, 191, 278
KasI GGCGCC 1 cut(s) 43
Ksp22I TGATCA 4 cut(s) 7, 145, 303, 823
Kzo9I GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
LmnI GCTCC 4 cut(s) 223, 240, 314, 727
LweI GCATC 4 cut(s) 163, 294, 669, 673
MaeI CTAG 2 cut(s) 135, 738
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 560
MalI GATC 7 cut(s) 9, 147, 305, 672, 770, 815, 825
MboI GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
MboII GAAGA 5 cut(s) 90, 334, 394, 478, 808
MflI RGATCY 2 cut(s) 670, 813
MhlI GDGCHC 2 cut(s) 245, 541
MluCI AATT 5 cut(s) 18, 105, 404, 428, 696
Mly113I GGCGCC 1 cut(s) 44
MnlI CCTC 5 cut(s) 34, 90, 171, 231, 516
MseI TTAA 5 cut(s) 173, 372, 395, 438, 675
MslI CAYNNNNRTG 1 cut(s) 623
MspA1I CMGCKG 1 cut(s) 766
MspCI CTTAAG 1 cut(s) 674
MspI CCGG 5 cut(s) 203, 221, 321, 496, 689
Mva1269I GAATGC 1 cut(s) 634
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 5 cut(s) 76, 323, 501, 692, 772
NarI GGCGCC 1 cut(s) 44
NdeII GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
NlaIII CATG 3 cut(s) 86, 415, 523
NlaIV GGNNCC 3 cut(s) 45, 78, 316
NmuCI GTSAC 1 cut(s) 560
PagI TCATGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 634
PinAI ACCGGT 2 cut(s) 320, 688
PkrI GCNGC 1 cut(s) 69
PluTI GGCGCC 1 cut(s) 47
PsiI TTATAA 1 cut(s) 841
Psp124BI GAGCTC 1 cut(s) 245
PspEI GGTNACC 1 cut(s) 560
PspN4I GGNNCC 3 cut(s) 45, 78, 316
PspPI GGNCC 2 cut(s) 598, 833
PstI CTGCAG 1 cut(s) 217
PsuI RGATCY 2 cut(s) 670, 813
PvuII CAGCTG 1 cut(s) 766
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 1 cut(s) 623
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 5 cut(s) 173, 372, 395, 438, 675
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 7 cut(s) 7, 145, 303, 670, 768, 813, 823
Sau96I GGNCC 2 cut(s) 598, 833
ScaI AGTACT 1 cut(s) 579
SduI GDGCHC 2 cut(s) 245, 541
SfaNI GCATC 4 cut(s) 163, 294, 669, 673
SfcI CTRYAG 1 cut(s) 213
SfoI GGCGCC 1 cut(s) 45
SgrAI CRCCGGYG 1 cut(s) 320
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 5 cut(s) 18, 105, 404, 428, 696
SsiI CCGC 2 cut(s) 68, 346
SspDI GGCGCC 1 cut(s) 43
SspMI CTAG 2 cut(s) 135, 738
SstI GAGCTC 1 cut(s) 245
StyI CCWWGG 2 cut(s) 556, 666
TaaI ACNGT 3 cut(s) 64, 577, 782
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 432
TasI AATT 5 cut(s) 18, 105, 404, 428, 696
TatI WGTACW 1 cut(s) 577
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 5 cut(s) 173, 372, 395, 438, 675
Tru9I TTAA 5 cut(s) 173, 372, 395, 438, 675
TscAI CASTG 5 cut(s) 69, 546, 627, 717, 826
TseFI GTSAC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 560
TspDTI ATGAA 3 cut(s) 11, 99, 641
TspRI CASTG 5 cut(s) 69, 546, 627, 717, 826
Vha464I CTTAAG 1 cut(s) 674
XagI CCTNNNNNAGG 1 cut(s) 165
XapI RAATTY 2 cut(s) 18, 428
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 2 cut(s) 135, 738
ZrmI AGTACT 1 cut(s) 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.