FvH4_5g18570

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014449
Physical Location & Seq
Reverse (-)
10681943 .. 10682830
888 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18570.t1

Sequence Viewer

Length: 888 bp
ATGGCTGATCATCAAAAAATTCATCCTGCGGTGGATCTGGAGGCACCACCAACTCCCACAGCGCCGCCTATGGTGCCTCATGGACACCGGCCTTCTTCAACGATTCCACAAGAGATGAATGAGAAATGTCCGGGTACTACTCCAGTTGCTTCTTCAACAATTCCACGAGAGATGAATAAGAAAGGTCCAAGTACTACTCCAGTTGATCAGCAGCGCCACCTTCCATTAGGTTCACGATCATCACACGTAGCACATACCATTCCGGTAATCCCTGCAGAGCCAAAGCAACCAGAAAAGAGGAGCTCTTCATCTACTTGTTGCAGATGTATTTGTTGGGCACTGAGCATCCTTCTCCTTGTATTGATCATAATAGGAGCCACTGCTGGAATACTTTATCTCATCTTCCGCCCAAAACTTCCAAGTTACTCTGTCAATAGCTTGAAGATAAGCGACTTAAGGCTCAATTTGGACATGAGCCTATATGCAAAATTCGACGTCAAGATAACAGCTGAGAACCCAAACAAGAAGATTGGGATTTACTATGAGCAGGGTGGCCAGTTGAGTGTGTGGTATACAAACATGAGGCTTTGTGAAGGGGCACTGCCAAAGTTTTACCAAGGTCACCAGAACAAAACAGTACTCAATGTGGCCTTGACAGGCCAAAACCAATATGGAAGCACACTGATGAATGCACTGCAACAGCAACAACAAACTGGAAGCATCCCCTTAGATCTCAAGGTTAATGCACCAGTAGCAATTGAATTGGGGACATTAAAGCTCAGGAAGGTCAGGATATTGGGGAAGTGTTTGTTGGTTGTGGATAGCCTCACTACTAATAATTTCATTAGCATAAAAGCTGATAATTGTAGATTTAGATTGAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

296

Amino Acids

32.51

Weight (kDa)

9.51

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 168 - 251 7.3e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccB1I GGYRCC 2 cut(s) 43, 73
AccI GTMKAC 1 cut(s) 572
AciI CCGC 3 cut(s) 29, 65, 406
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 2 cut(s) 18, 488
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 3 cut(s) 136, 193, 639
AflII CTTAAG 1 cut(s) 454
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 5 cut(s) 99, 156, 442, 761, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 6 cut(s) 303, 438, 509, 778, 857, 883
AluI AGCT 6 cut(s) 303, 438, 509, 778, 857, 883
Alw21I GWGCWC 1 cut(s) 305
AlwI GGATC 1 cut(s) 42
AoxI GGCC 4 cut(s) 89, 553, 648, 658
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 2 cut(s) 18, 488
AspLEI GCGC 2 cut(s) 64, 216
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 614
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 2 cut(s) 340, 601
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 2 cut(s) 43, 73
BanII GRGCYC 1 cut(s) 305
BauI CACGAG 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 223
BclI TGATCA 3 cut(s) 7, 205, 363
BcnI CCSGG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 2 cut(s) 65, 217
BfrI CTTAAG 1 cut(s) 454
BglII AGATCT 1 cut(s) 730
BisI GCNGC 2 cut(s) 65, 212
BlsI GCNGC 2 cut(s) 66, 213
BmcAI AGTACT 2 cut(s) 193, 639
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 45, 75, 376
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 354, 729
BpmI CTGGAG 3 cut(s) 59, 126, 183
Bpu10I CCTNAGC 1 cut(s) 779
BpuEI CTTGAG 1 cut(s) 719
BpuMI CCSGG 1 cut(s) 132
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 1 cut(s) 616
BsaWI WCCGGW 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 5 cut(s) 143, 200, 556, 718, 749
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 3 cut(s) 22, 345, 720
BseMII CTCAG 3 cut(s) 332, 501, 793
BseNI ACTGG 5 cut(s) 143, 200, 556, 718, 749
BseRI GAGGAG 1 cut(s) 313
BseSI GKGCMC 2 cut(s) 340, 601
BseXI GCAGC 1 cut(s) 223
BshFI GGCC 4 cut(s) 91, 555, 650, 660
BshNI GGYRCC 2 cut(s) 43, 73
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 3 cut(s) 88, 131, 263
BslFI GGGAC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 781
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 4 cut(s) 91, 555, 650, 660
Bsp1286I GDGCHC 3 cut(s) 305, 340, 601
Bsp143I GATC 6 cut(s) 7, 34, 205, 236, 363, 730
BspACI CCGC 3 cut(s) 29, 65, 406
BspANI GGCC 4 cut(s) 91, 555, 650, 660
BspCNI CTCAG 3 cut(s) 333, 502, 792
BspLI GGNNCC 3 cut(s) 45, 75, 376
BspMAI CTGCAG 1 cut(s) 277
BspPI GGATC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 310
BspT107I GGYRCC 2 cut(s) 43, 73
BspTI CTTAAG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 5 cut(s) 143, 200, 556, 718, 749
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 6 cut(s) 7, 34, 205, 236, 363, 730
BssNAI GTATAC 1 cut(s) 573
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 616
Bst1107I GTATAC 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 637
Bst6I CTCTTC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 495
BstAFI CTTAAG 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 247
BstDEI CTNAG 4 cut(s) 341, 510, 727, 779
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 3 cut(s) 22, 345, 720
BstH2I RGCGCY 2 cut(s) 65, 217
BstHHI GCGC 2 cut(s) 64, 216
BstKTI GATC 6 cut(s) 10, 37, 208, 239, 366, 733
BstMBI GATC 6 cut(s) 7, 34, 205, 236, 363, 730
BstMWI GCNNNNNNNGC 2 cut(s) 73, 752
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 2 cut(s) 340, 601
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 2 cut(s) 34, 730
BstYI RGATCY 2 cut(s) 34, 730
BstZ17I GTATAC 1 cut(s) 573
BsuRI GGCC 4 cut(s) 91, 555, 650, 660
BtsCI GGATG 3 cut(s) 22, 345, 720
BtsI GCAGTG 3 cut(s) 378, 599, 692
BtsIMutI CAGTG 5 cut(s) 338, 378, 599, 680, 692
CfoI GCGC 2 cut(s) 64, 216
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 3 cut(s) 135, 192, 638
CviAII CATG 3 cut(s) 80, 472, 580
CviQI GTAC 3 cut(s) 135, 192, 638
DdeI CTNAG 4 cut(s) 341, 510, 727, 779
DpnI GATC 6 cut(s) 9, 36, 207, 238, 365, 732
DpnII GATC 6 cut(s) 7, 34, 205, 236, 363, 730
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 310
EarI CTCTTC 1 cut(s) 310
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 303
Eco91I GGTNACC 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 303
EcoO65I GGTNACC 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 305
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 3 cut(s) 83, 475, 583
FaqI GGGAC 1 cut(s) 781
FatI CATG 3 cut(s) 79, 471, 579
FbaI TGATCA 3 cut(s) 7, 205, 363
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 2 cut(s) 65, 212
FokI GGATG 3 cut(s) 9, 332, 707
FriOI GRGCYC 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 65, 212
GlaI GCGC 2 cut(s) 63, 215
GluI GCNGC 2 cut(s) 65, 212
GsuI CTGGAG 3 cut(s) 59, 126, 183
HaeII RGCGCY 2 cut(s) 65, 217
HaeIII GGCC 4 cut(s) 91, 555, 650, 660
HapII CCGG 3 cut(s) 88, 131, 263
HhaI GCGC 2 cut(s) 64, 216
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 3 cut(s) 83, 475, 583
Hin6I GCGC 2 cut(s) 62, 214
HinP1I GCGC 2 cut(s) 62, 214
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 1 cut(s) 103
HpaII CCGG 3 cut(s) 88, 131, 263
HphI GGTGA 1 cut(s) 614
Hpy166II GTNNAC 2 cut(s) 233, 573
Hpy188III TCNNGA 5 cut(s) 38, 234, 499, 781, 790
Hpy8I GTNNAC 2 cut(s) 233, 573
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 5 cut(s) 102, 230, 359, 587, 778
HpyCH4III ACNGT 1 cut(s) 637
HpyCH4IV ACGT 2 cut(s) 246, 495
HpyCH4V TGCA 6 cut(s) 275, 321, 485, 692, 697, 746
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 752
HpyF3I CTNAG 4 cut(s) 341, 510, 727, 779
HpySE526I ACGT 2 cut(s) 246, 495
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 3 cut(s) 83, 475, 583
HspAI GCGC 2 cut(s) 62, 214
Ksp22I TGATCA 3 cut(s) 7, 205, 363
Kzo9I GATC 6 cut(s) 7, 34, 205, 236, 363, 730
LguI GCTCTTC 1 cut(s) 310
LmnI GCTCC 2 cut(s) 300, 374
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 2 cut(s) 354, 729
MaeII ACGT 2 cut(s) 246, 495
MaeIII GTNAC 2 cut(s) 422, 620
MalI GATC 6 cut(s) 9, 36, 207, 238, 365, 732
MboI GATC 6 cut(s) 7, 34, 205, 236, 363, 730
MboII GAAGA 6 cut(s) 87, 144, 297, 394, 454, 538
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 2 cut(s) 34, 730
MhlI GDGCHC 3 cut(s) 305, 340, 601
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 8 cut(s) 18, 159, 463, 488, 756, 761, 838, 862
MluNI TGGCCA 1 cut(s) 555
MnlI CCTC 5 cut(s) 34, 87, 291, 576, 836
Mox20I TGGCCA 1 cut(s) 555
MscI TGGCCA 1 cut(s) 555
MseI TTAA 3 cut(s) 455, 741, 773
MslI CAYNNNNRTG 1 cut(s) 683
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 509
MspCI CTTAAG 1 cut(s) 454
MspI CCGG 3 cut(s) 88, 131, 263
MspR9I CCNGG 1 cut(s) 132
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 694
MwoI GCNNNNNNNGC 2 cut(s) 73, 752
NciI CCSGG 1 cut(s) 132
NdeII GATC 6 cut(s) 7, 34, 205, 236, 363, 730
NlaIII CATG 3 cut(s) 83, 475, 583
NlaIV GGNNCC 3 cut(s) 45, 75, 376
NmuCI GTSAC 1 cut(s) 620
PciSI GCTCTTC 1 cut(s) 310
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 2 cut(s) 66, 213
Ppu21I YACGTR 1 cut(s) 247
Psp124BI GAGCTC 1 cut(s) 305
PspEI GGTNACC 1 cut(s) 620
PspN4I GGNNCC 3 cut(s) 45, 75, 376
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 2 cut(s) 34, 730
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 3 cut(s) 136, 193, 639
RsaNI GTAC 3 cut(s) 135, 192, 638
RseI CAYNNNNRTG 1 cut(s) 683
SacI GAGCTC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 3 cut(s) 455, 741, 773
SatI GCNGC 2 cut(s) 65, 212
Sau3AI GATC 6 cut(s) 7, 34, 205, 236, 363, 730
Sau96I GGNCC 1 cut(s) 185
ScaI AGTACT 2 cut(s) 193, 639
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 3 cut(s) 305, 340, 601
SfaNI GCATC 2 cut(s) 354, 729
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 683
SmlI CTYRAG 2 cut(s) 454, 734
SmoI CTYRAG 2 cut(s) 454, 734
Sse9I AATT 8 cut(s) 18, 159, 463, 488, 756, 761, 838, 862
SsiI CCGC 3 cut(s) 29, 65, 406
SstI GAGCTC 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 1 cut(s) 637
TaiI ACGT 2 cut(s) 249, 498
TaqI TCGA 1 cut(s) 492
TasI AATT 8 cut(s) 18, 159, 463, 488, 756, 761, 838, 862
TatI WGTACW 2 cut(s) 191, 637
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 3 cut(s) 455, 741, 773
Tru9I TTAA 3 cut(s) 455, 741, 773
TscAI CASTG 5 cut(s) 345, 385, 606, 687, 699
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 6 cut(s) 11, 131, 188, 297, 701, 832
TspRI CASTG 5 cut(s) 345, 385, 606, 687, 699
Vha464I CTTAAG 1 cut(s) 454
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 2 cut(s) 18, 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 572
ZraI GACGTC 1 cut(s) 496
ZrmI AGTACT 2 cut(s) 193, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.