Rh7BG002000

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014449
Physical Location & Seq
Forward (+)
154478 .. 155311
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG002000.1

Sequence Viewer

Length: 834 bp
ATGGCTGATCATCAAAGAATTCATCCTGCTGTGGATGTGGAGGCGCCACCATCACCAACAGTGCTGCCTATGGTGCCTCACGGACACCAGAGTTCTTCAACAACTACACAAAAAGAGATGAAAGAGAAAGGTATAGGTACTAGTCCTGTTGATCAACAGCATCGCCCTCCATTAGGTTTACGACCATCACAAGTTGCGCGTGCCATTCCTGTAATCCCTGCAGAGCCGAAGCAACCAGAAAAGAGGAGCTCATCATCTAGTTGTTGCAGATGTATATGTTGGGCACTGAGCATCCTTCTCCTTGTATTGATCATAATAGGAGCCACCGGTGGAATACTTTATTTTATCTTCCGCCCGAAACTTCCAAGCTACTCTGTTAATAGCTTGAAGATAAGCGATTTAAGGCTCAATTTGGACATGAGCCTATATGCCAAATTCGACGTGAAGATAACAGCTAACAACCCAAACAAGAAGATTGGGATTTATTATGAACAAGGTGGCCGGTTGAGCGTGTGGTATACAAACATGAGGCTTTGTGAAGGGGCACTGCCAAAGTTTTACCAAGGTCACCAGAACAAAACAGTACTCAATGTGGCCTTGACTGGCCAAAACCAATACGGAAACACATTGATGAATGCACTGCAACAGCAACAACAAACTGGAAGCATCCCCTTGGATCTTAAGGTTGATGCACCTGTAGCAATTCAACTGGGGACACTGAAGCTCAGGAAGGTCAGGATCTTGGGGCAGTGTTTGTTGGTTGCGGATAGCCTCACCGCTAATAATTTCATTAGCATAAAAGCTAATAATTGTAGATTTAGATTGAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

277

Amino Acids

30.59

Weight (kDa)

9.73

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 150 - 242 1.4e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 73
AccI GTMKAC 1 cut(s) 518
AccII CGCG 1 cut(s) 199
AciI CCGC 3 cut(s) 352, 764, 777
AclWI GGATC 2 cut(s) 684, 746
AcoI YGGCCR 2 cut(s) 499, 604
AcsI RAATTY 2 cut(s) 18, 434
AcuI CTGAAG 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 139, 585
AfiI CCNNNNNNNGG 1 cut(s) 173
AflII CTTAAG 1 cut(s) 680
AgeI ACCGGT 1 cut(s) 326
AgsI TTSAA 4 cut(s) 99, 388, 707, 826
AhlI ACTAGT 1 cut(s) 140
AjiI CACGTC 1 cut(s) 442
AluBI AGCT 6 cut(s) 249, 369, 384, 455, 724, 803
AluI AGCT 6 cut(s) 249, 369, 384, 455, 724, 803
Alw21I GWGCWC 1 cut(s) 251
AlwI GGATC 2 cut(s) 684, 746
AoxI GGCC 3 cut(s) 499, 594, 604
ApeKI GCWGC 1 cut(s) 64
ApoI RAATTY 2 cut(s) 18, 434
AsiGI ACCGGT 1 cut(s) 326
AspLEI GCGC 2 cut(s) 46, 199
AsuHPI GGTGA 3 cut(s) 45, 560, 766
BaeGI GKGCMC 2 cut(s) 286, 547
BalI TGGCCA 1 cut(s) 606
BanI GGYRCC 2 cut(s) 43, 73
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 51
BccI CCATC 2 cut(s) 58, 193
BclI TGATCA 3 cut(s) 7, 151, 309
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 2 cut(s) 141, 258
BfmI CTRYAG 2 cut(s) 219, 696
BfoI RGCGCY 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 680
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
BmcAI AGTACT 1 cut(s) 585
BmgBI CACGTC 1 cut(s) 442
BmiI GGNNCC 3 cut(s) 45, 75, 322
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 4 cut(s) 169, 300, 675, 679
BmuI ACTGGG 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 725
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 562, 672
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse118I RCCGGY 2 cut(s) 326, 501
Bse1I ACTGG 3 cut(s) 607, 664, 714
BseDI CCNNGG 2 cut(s) 562, 672
BseGI GGATG 4 cut(s) 22, 40, 291, 666
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMII CTCAG 2 cut(s) 278, 739
BseNI ACTGG 3 cut(s) 607, 664, 714
BseRI GAGGAG 1 cut(s) 259
BseSI GKGCMC 2 cut(s) 286, 547
BseXI GCAGC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 199
BshFI GGCC 3 cut(s) 501, 596, 606
BshNI GGYRCC 2 cut(s) 43, 73
BshTI ACCGGT 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 251
BsiSI CCGG 2 cut(s) 327, 502
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 727
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 3 cut(s) 501, 596, 606
Bsp1286I GDGCHC 3 cut(s) 251, 286, 547
Bsp143I GATC 5 cut(s) 7, 151, 309, 676, 738
BspACI CCGC 3 cut(s) 352, 764, 777
BspANI GGCC 3 cut(s) 501, 596, 606
BspCNI CTCAG 2 cut(s) 279, 738
BspFNI CGCG 1 cut(s) 199
BspLI GGNNCC 3 cut(s) 45, 75, 322
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 2 cut(s) 684, 746
BspT107I GGYRCC 2 cut(s) 43, 73
BspTI CTTAAG 1 cut(s) 680
BsrFI RCCGGY 2 cut(s) 326, 501
BsrI ACTGG 3 cut(s) 607, 664, 714
BssAI RCCGGY 2 cut(s) 326, 501
BssECI CCNNGG 2 cut(s) 562, 672
BssMI GATC 5 cut(s) 7, 151, 309, 676, 738
BssNAI GTATAC 1 cut(s) 519
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 562, 672
Bst1107I GTATAC 1 cut(s) 519
Bst4CI ACNGT 2 cut(s) 61, 583
BstACI GRCGYC 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 287, 725
BstEII GGTNACC 1 cut(s) 566
BstENI CCTNNNNNAGG 1 cut(s) 171
BstF5I GGATG 4 cut(s) 22, 40, 291, 666
BstFNI CGCG 1 cut(s) 199
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 199
BstKTI GATC 5 cut(s) 10, 154, 312, 679, 741
BstMBI GATC 5 cut(s) 7, 151, 309, 676, 738
BstMWI GCNNNNNNNGC 3 cut(s) 73, 507, 698
BstPI GGTNACC 1 cut(s) 566
BstSFI CTRYAG 2 cut(s) 219, 696
BstSLI GKGCMC 2 cut(s) 286, 547
BstUI CGCG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 676, 738
BstYI RGATCY 2 cut(s) 676, 738
BstZ17I GTATAC 1 cut(s) 519
BsuRI GGCC 3 cut(s) 501, 596, 606
BtgZI GCGATG 1 cut(s) 146
BtrI CACGTC 1 cut(s) 442
BtsCI GGATG 4 cut(s) 22, 40, 291, 666
BtsI GCAGTG 3 cut(s) 545, 638, 755
BtsIMutI CAGTG 6 cut(s) 66, 284, 545, 638, 716, 755
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 2 cut(s) 46, 199
Cfr10I RCCGGY 2 cut(s) 326, 501
Csp6I GTAC 2 cut(s) 138, 584
CspAI ACCGGT 1 cut(s) 326
CviAII CATG 2 cut(s) 418, 526
CviQI GTAC 2 cut(s) 138, 584
DdeI CTNAG 2 cut(s) 287, 725
DinI GGCGCC 1 cut(s) 45
DpnI GATC 5 cut(s) 9, 153, 311, 678, 740
DpnII GATC 5 cut(s) 7, 151, 309, 676, 738
EaeI YGGCCR 2 cut(s) 499, 604
EciI GGCGGA 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 562, 672
Eco24I GRGCYC 1 cut(s) 251
Eco53kI GAGCTC 1 cut(s) 249
Eco57I CTGAAG 1 cut(s) 740
Eco91I GGTNACC 1 cut(s) 566
EcoICRI GAGCTC 1 cut(s) 249
EcoNI CCTNNNNNAGG 1 cut(s) 171
EcoO65I GGTNACC 1 cut(s) 566
EcoRI GAATTC 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 562, 672
EcoT38I GRGCYC 1 cut(s) 251
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
ErhI CCWWGG 2 cut(s) 562, 672
FaeI CATG 2 cut(s) 421, 529
FaqI GGGAC 1 cut(s) 727
FatI CATG 2 cut(s) 417, 525
FbaI TGATCA 3 cut(s) 7, 151, 309
FblI GTMKAC 1 cut(s) 518
Fnu4HI GCNGC 1 cut(s) 65
FokI GGATG 4 cut(s) 9, 47, 278, 653
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 65
FspBI CTAG 2 cut(s) 141, 258
GlaI GCGC 2 cut(s) 45, 198
GluI GCNGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 3 cut(s) 501, 596, 606
HapII CCGG 2 cut(s) 327, 502
HhaI GCGC 2 cut(s) 46, 199
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 2 cut(s) 421, 529
Hin6I GCGC 2 cut(s) 44, 197
HinP1I GCGC 2 cut(s) 44, 197
HpaII CCGG 2 cut(s) 327, 502
HphI GGTGA 3 cut(s) 45, 560, 766
Hpy166II GTNNAC 2 cut(s) 179, 519
Hpy188III TCNNGA 2 cut(s) 727, 736
Hpy8I GTNNAC 2 cut(s) 179, 519
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 3 cut(s) 305, 533, 724
HpyCH4III ACNGT 2 cut(s) 61, 583
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 5 cut(s) 221, 267, 638, 643, 692
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 507, 698
HpyF3I CTNAG 2 cut(s) 287, 725
HpySE526I ACGT 1 cut(s) 441
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 421, 529
HspAI GCGC 2 cut(s) 44, 197
KasI GGCGCC 1 cut(s) 43
Ksp22I TGATCA 3 cut(s) 7, 151, 309
Kzo9I GATC 5 cut(s) 7, 151, 309, 676, 738
LmnI GCTCC 2 cut(s) 246, 320
Lsp1109I GCAGC 1 cut(s) 51
LweI GCATC 4 cut(s) 169, 300, 675, 679
MaeI CTAG 2 cut(s) 141, 258
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 566
MalI GATC 5 cut(s) 9, 153, 311, 678, 740
MboI GATC 5 cut(s) 7, 151, 309, 676, 738
MboII GAAGA 5 cut(s) 87, 340, 400, 457, 484
MflI RGATCY 2 cut(s) 676, 738
MhlI GDGCHC 3 cut(s) 251, 286, 547
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 6 cut(s) 18, 409, 434, 702, 784, 808
MluNI TGGCCA 1 cut(s) 606
Mly113I GGCGCC 1 cut(s) 44
MnlI CCTC 6 cut(s) 34, 87, 177, 237, 522, 782
Mox20I TGGCCA 1 cut(s) 606
MscI TGGCCA 1 cut(s) 606
MseI TTAA 3 cut(s) 378, 401, 681
MslI CAYNNNNRTG 1 cut(s) 629
Msp20I TGGCCA 1 cut(s) 606
MspCI CTTAAG 1 cut(s) 680
MspI CCGG 2 cut(s) 327, 502
Mva1269I GAATGC 1 cut(s) 640
MvnI CGCG 1 cut(s) 199
MwoI GCNNNNNNNGC 3 cut(s) 73, 507, 698
NarI GGCGCC 1 cut(s) 44
NdeII GATC 5 cut(s) 7, 151, 309, 676, 738
NlaIII CATG 2 cut(s) 421, 529
NlaIV GGNNCC 3 cut(s) 45, 75, 322
NmuCI GTSAC 1 cut(s) 566
PctI GAATGC 1 cut(s) 640
PinAI ACCGGT 1 cut(s) 326
PkrI GCNGC 1 cut(s) 66
PluTI GGCGCC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 251
PspEI GGTNACC 1 cut(s) 566
PspN4I GGNNCC 3 cut(s) 45, 75, 322
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 2 cut(s) 676, 738
RsaI GTAC 2 cut(s) 139, 585
RsaNI GTAC 2 cut(s) 138, 584
RseI CAYNNNNRTG 1 cut(s) 629
SacI GAGCTC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 378, 401, 681
SatI GCNGC 1 cut(s) 65
Sau3AI GATC 5 cut(s) 7, 151, 309, 676, 738
ScaI AGTACT 1 cut(s) 585
SduI GDGCHC 3 cut(s) 251, 286, 547
SfaNI GCATC 4 cut(s) 169, 300, 675, 679
SfcI CTRYAG 2 cut(s) 219, 696
SfoI GGCGCC 1 cut(s) 45
SgrAI CRCCGGYG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 680
SmoI CTYRAG 1 cut(s) 680
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 6 cut(s) 18, 409, 434, 702, 784, 808
SsiI CCGC 3 cut(s) 352, 764, 777
SspDI GGCGCC 1 cut(s) 43
SspMI CTAG 2 cut(s) 141, 258
SstI GAGCTC 1 cut(s) 251
StyI CCWWGG 2 cut(s) 562, 672
TaaI ACNGT 2 cut(s) 61, 583
TaiI ACGT 1 cut(s) 444
TaqI TCGA 1 cut(s) 438
TasI AATT 6 cut(s) 18, 409, 434, 702, 784, 808
TatI WGTACW 1 cut(s) 583
Tru1I TTAA 3 cut(s) 378, 401, 681
Tru9I TTAA 3 cut(s) 378, 401, 681
TscAI CASTG 6 cut(s) 66, 291, 552, 645, 723, 755
TseFI GTSAC 1 cut(s) 566
TseI GCWGC 1 cut(s) 64
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 5 cut(s) 11, 134, 504, 647, 778
TspGWI ACGGA 2 cut(s) 96, 633
TspRI CASTG 6 cut(s) 66, 291, 552, 645, 723, 755
Vha464I CTTAAG 1 cut(s) 680
XagI CCTNNNNNAGG 1 cut(s) 171
XapI RAATTY 2 cut(s) 18, 434
XmiI GTMKAC 1 cut(s) 518
XspI CTAG 2 cut(s) 141, 258
ZrmI AGTACT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.