pycom2874g00100

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00002874
OG0014449
Physical Location & Seq
Forward (+)
76129 .. 76473
345 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom2874g00100.1

Sequence Viewer

Length: 345 bp
ATGCTCAATTTGACGTCAAATAACAGTCAATTACCCAAACAAGAGATCGGAATTTACTACGAGAATGGCGGCCGGTTGAGTGTGTGGTATACAAACACGAAGCTTTATCAAGGGACGCTACCAAAGTTTTACCAAGCTAATCCGAACAATACTCTACTCAATGTAGCCTTGACTGGCCAAACGCAATATGGAAGCACTTTGATGAATGCACTGCAACAGCAACAACAAACCGGATGCATCCCCTTGGATCTAAAGCTTAACGAACCCGTGGCAATTAAACCCGGGAAATTGAAGCTCAGGAAGGTGACCATCTTGGGGAAATGCTTGTTGGTGGTAGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

115

Amino Acids

12.68

Weight (kDa)

9.48

Isoelectric Point (pI)

23.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
AccI GTMKAC 1 cut(s) 89
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 2 cut(s) 70, 175
AcsI RAATTY 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 1 cut(s) 292
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 5 cut(s) 103, 137, 256, 295, 342
AluI AGCT 5 cut(s) 103, 137, 256, 295, 342
AlwI GGATC 1 cut(s) 255
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 2 cut(s) 70, 175
ApoI RAATTY 1 cut(s) 51
AsuC2I CCSGG 2 cut(s) 282, 283
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 281
BalI TGGCCA 1 cut(s) 177
BccI CCATC 1 cut(s) 317
BcnI CCSGG 2 cut(s) 282, 283
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 282, 283
BmeT110I CYCGRG 1 cut(s) 281
BmrFI CCNGG 2 cut(s) 282, 283
BmsI GCATC 2 cut(s) 224, 246
Bpu10I CCTNAGC 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 282, 283
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 243, 267, 281
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 3 cut(s) 243, 267, 281
BseGI GGATG 2 cut(s) 237, 239
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMII CTCAG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 178
BseX3I CGGCCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 72, 177
BsiEI CGRYCG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 3 cut(s) 73, 231, 282
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 127
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 2 cut(s) 72, 177
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 2 cut(s) 45, 247
BspACI CCGC 1 cut(s) 69
BspANI GGCC 2 cut(s) 72, 177
BspCNI CTCAG 1 cut(s) 309
BspPI GGATC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 243, 267, 281
BssMI GATC 2 cut(s) 45, 247
BssNAI GTATAC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 243
Bst1107I GTATAC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 296
BstDSI CCRYGG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 304
BstF5I GGATG 2 cut(s) 237, 239
BstKTI GATC 2 cut(s) 48, 250
BstMBI GATC 2 cut(s) 45, 247
BstMCI CGRYCG 1 cut(s) 73
BstPI GGTNACC 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 280, 281
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BstZ17I GTATAC 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 70
BsuRI GGCC 2 cut(s) 72, 177
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 237, 239
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
Cfr10I RCCGGY 1 cut(s) 72
Cfr9I CCCGGG 1 cut(s) 281
CseI GACGC 1 cut(s) 124
CviJI RGCY 8 cut(s) 72, 103, 137, 167, 177, 256, 295, 342
CviKI_1 RGCY 8 cut(s) 72, 103, 137, 167, 177, 256, 295, 342
DdeI CTNAG 1 cut(s) 296
DpnI GATC 2 cut(s) 47, 249
DpnII GATC 2 cut(s) 45, 247
EaeI YGGCCR 2 cut(s) 70, 175
EagI CGGCCG 1 cut(s) 70
EclXI CGGCCG 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 243
Eco52I CGGCCG 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 281
Eco91I GGTNACC 1 cut(s) 304
EcoO65I GGTNACC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 243
FaiI YATR 2 cut(s) 90, 189
FaqI GGGAC 1 cut(s) 127
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 70
FokI GGATG 2 cut(s) 224, 246
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 2 cut(s) 72, 177
HapII CCGG 3 cut(s) 73, 231, 282
HgaI GACGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 14
HindIII AAGCTT 2 cut(s) 101, 254
HpaII CCGG 3 cut(s) 73, 231, 282
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 2 cut(s) 50, 144
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 209, 214, 237
HpyF3I CTNAG 1 cut(s) 296
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 45, 247
LpnPI CCDG 5 cut(s) 86, 159, 244, 283, 295
LweI GCATC 2 cut(s) 224, 246
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 304
MalI GATC 2 cut(s) 47, 249
MboI GATC 2 cut(s) 45, 247
MflI RGATCY 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 5 cut(s) 7, 29, 51, 273, 287
MluNI TGGCCA 1 cut(s) 177
Mox20I TGGCCA 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 239
MscI TGGCCA 1 cut(s) 177
MseI TTAA 2 cut(s) 258, 276
MslI CAYNNNNRTG 1 cut(s) 200
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 3 cut(s) 73, 231, 282
MspR9I CCNGG 2 cut(s) 282, 283
Mva1269I GAATGC 1 cut(s) 211
NciI CCSGG 2 cut(s) 282, 283
NdeII GATC 2 cut(s) 45, 247
NmuCI GTSAC 1 cut(s) 304
NsiI ATGCAT 1 cut(s) 239
PctI GAATGC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 71
PspEI GGTNACC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 200
SaqAI TTAA 2 cut(s) 258, 276
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 2 cut(s) 45, 247
ScrFI CCNGG 2 cut(s) 282, 283
SetI ASST 7 cut(s) 17, 105, 139, 258, 297, 306, 344
SfaNI GCATC 2 cut(s) 224, 246
SmaI CCCGGG 1 cut(s) 283
SmiMI CAYNNNNRTG 1 cut(s) 200
Sse9I AATT 5 cut(s) 7, 29, 51, 273, 287
SsiI CCGC 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 280, 281
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 26
TaiI ACGT 1 cut(s) 17
TasI AATT 5 cut(s) 7, 29, 51, 273, 287
TauI GCSGC 1 cut(s) 72
Tru1I TTAA 2 cut(s) 258, 276
Tru9I TTAA 2 cut(s) 258, 276
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 218
TspMI CCCGGG 1 cut(s) 281
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 51
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmaI CCCGGG 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 89
ZraI GACGTC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.