RchiOBHm_Chr7g0176941

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014449
Physical Location & Seq
Forward (+)
130725 .. 132030
1306 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15759

Sequence Viewer

Length: 837 bp
ATGGCTGATCATCAAAGAATTCATCCTGCTGTGGATGTGGAGGCGCCACCACCATCACCAACAGTGCCGCCTATGGTGCCTCATGGACACCAGAGTTCTTCAACAATTACACAAAAAGAGATGAAAGAGAGAGGTATAGGTACTAGTCCAGTTGATCAACAGCATCGCCCTCCATTAGGTTTAAGACCATCACAAGTTGCGCGTGCCATTCCAGTAATCCCTGCAGAGCCGGAGCAACCAGAAAAGAGGAGCTCATCATCTACTTATTGCAGATGTATGTGTTGGGCACTGAGCATCCTTCTCCTTGTATTGATCACAATAGGAGCCACCGGTGGAATACTTTATATTATCTTCCGCCCGAAACTTCCAAGCTACTCTGTTAATAGCTTGAAGATAAGCGATTTAAGGCTCAAATTGGACATGAGCCTATATGCCGAATTCGATGTTAAGATAACAGCTAACAACCCAAACAAGAAGATTGGGATTTATTATGAGCAAGGTGGCCGGTTGAGCGTGTGGTATATAAACATGAGGCTTTGTGAAGGGGCACTGCCAAAGTTTTACCAAGGTCACCAGAACAAAACAGTAATCAATGTGGTCTTGACGGGCCAAAACCAATACGGAAACACATTGATGAATGCACTGCAACAGCAACAACAAACTGGAAGCATCCCCTTGGATCTTAAGGTTGATGCACCGGTAGCAATTCAAGTGGGGACACTGAAGCTCAGGAAGGTCAGGATATTGGGGCAGTGTTTGTTGGTTGTGGATAGCCTCACCGCTAATAATTTCATTAGCATAAAAGCTAATAATTGTAGATTTAGATTGAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

278

Amino Acids

30.83

Weight (kDa)

9.6

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 151 - 246 6e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 43, 76
AccII CGCG 1 cut(s) 202
AciI CCGC 3 cut(s) 68, 355, 780
AclWI GGATC 1 cut(s) 687
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 2 cut(s) 18, 437
AcuI CTGAAG 1 cut(s) 743
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 176
AflII CTTAAG 1 cut(s) 683
AgeI ACCGGT 2 cut(s) 329, 697
AgsI TTSAA 4 cut(s) 102, 391, 710, 829
AhlI ACTAGT 1 cut(s) 143
AluBI AGCT 6 cut(s) 252, 372, 387, 458, 727, 806
AluI AGCT 6 cut(s) 252, 372, 387, 458, 727, 806
Alw21I GWGCWC 1 cut(s) 254
AlwI GGATC 1 cut(s) 687
AoxI GGCC 2 cut(s) 502, 607
ApoI RAATTY 2 cut(s) 18, 437
AsiGI ACCGGT 2 cut(s) 329, 697
AspLEI GCGC 2 cut(s) 46, 202
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 3 cut(s) 48, 563, 769
BaeGI GKGCMC 2 cut(s) 289, 550
BanI GGYRCC 2 cut(s) 43, 76
BanII GRGCYC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 254
BccI CCATC 2 cut(s) 61, 196
BclI TGATCA 3 cut(s) 7, 154, 312
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 47
BfrI CTTAAG 1 cut(s) 683
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 3 cut(s) 45, 78, 325
BmsI GCATC 4 cut(s) 172, 303, 678, 682
Bpu10I CCTNAGC 1 cut(s) 728
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 565, 675
BsaWI WCCGGW 2 cut(s) 329, 697
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse118I RCCGGY 3 cut(s) 329, 504, 697
Bse1I ACTGG 3 cut(s) 149, 212, 667
BseDI CCNNGG 2 cut(s) 565, 675
BseGI GGATG 4 cut(s) 22, 40, 294, 669
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 281, 742
BseNI ACTGG 3 cut(s) 149, 212, 667
BseRI GAGGAG 1 cut(s) 262
BseSI GKGCMC 2 cut(s) 289, 550
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 504, 609
BshNI GGYRCC 2 cut(s) 43, 76
BshTI ACCGGT 2 cut(s) 329, 697
BsiHKAI GWGCWC 1 cut(s) 254
BsiSI CCGG 4 cut(s) 230, 330, 505, 698
BslFI GGGAC 1 cut(s) 730
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 730
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 504, 609
Bsp1286I GDGCHC 3 cut(s) 254, 289, 550
Bsp143I GATC 4 cut(s) 7, 154, 312, 679
BspACI CCGC 3 cut(s) 68, 355, 780
BspANI GGCC 2 cut(s) 504, 609
BspCNI CTCAG 2 cut(s) 282, 741
BspFNI CGCG 1 cut(s) 202
BspLI GGNNCC 3 cut(s) 45, 78, 325
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 687
BspT107I GGYRCC 2 cut(s) 43, 76
BspTI CTTAAG 1 cut(s) 683
BsrFI RCCGGY 3 cut(s) 329, 504, 697
BsrI ACTGG 3 cut(s) 149, 212, 667
BssAI RCCGGY 3 cut(s) 329, 504, 697
BssECI CCNNGG 2 cut(s) 565, 675
BssMI GATC 4 cut(s) 7, 154, 312, 679
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 565, 675
Bst4CI ACNGT 2 cut(s) 64, 586
BstACI GRCGYC 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 683
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 290, 728
BstEII GGTNACC 1 cut(s) 569
BstENI CCTNNNNNAGG 1 cut(s) 174
BstF5I GGATG 4 cut(s) 22, 40, 294, 669
BstFNI CGCG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 47
BstHHI GCGC 2 cut(s) 46, 202
BstKTI GATC 4 cut(s) 10, 157, 315, 682
BstMBI GATC 4 cut(s) 7, 154, 312, 679
BstMWI GCNNNNNNNGC 3 cut(s) 76, 510, 701
BstPI GGTNACC 1 cut(s) 569
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 2 cut(s) 289, 550
BstUI CGCG 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
BsuRI GGCC 2 cut(s) 504, 609
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 4 cut(s) 22, 40, 294, 669
BtsI GCAGTG 3 cut(s) 548, 641, 758
BtsIMutI CAGTG 6 cut(s) 69, 287, 548, 641, 719, 758
Cac8I GCNNGC 1 cut(s) 204
CfoI GCGC 2 cut(s) 46, 202
Cfr10I RCCGGY 3 cut(s) 329, 504, 697
Cfr13I GGNCC 1 cut(s) 607
Csp6I GTAC 1 cut(s) 141
CspAI ACCGGT 2 cut(s) 329, 697
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 3 cut(s) 83, 421, 529
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 2 cut(s) 290, 728
DinI GGCGCC 1 cut(s) 45
DpnI GATC 4 cut(s) 9, 156, 314, 681
DpnII GATC 4 cut(s) 7, 154, 312, 679
EaeI YGGCCR 1 cut(s) 502
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 565, 675
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 743
Eco91I GGTNACC 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 174
EcoO65I GGTNACC 1 cut(s) 569
EcoRI GAATTC 2 cut(s) 18, 437
EcoT14I CCWWGG 2 cut(s) 565, 675
EcoT38I GRGCYC 1 cut(s) 254
EgeI GGCGCC 1 cut(s) 45
EheI GGCGCC 1 cut(s) 45
ErhI CCWWGG 2 cut(s) 565, 675
FaeI CATG 3 cut(s) 86, 424, 532
FaqI GGGAC 1 cut(s) 730
FatI CATG 3 cut(s) 82, 420, 528
FbaI TGATCA 3 cut(s) 7, 154, 312
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 4 cut(s) 9, 47, 281, 656
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 1 cut(s) 144
GlaI GCGC 2 cut(s) 45, 201
GluI GCNGC 1 cut(s) 68
HaeII RGCGCY 1 cut(s) 47
HaeIII GGCC 2 cut(s) 504, 609
HapII CCGG 4 cut(s) 230, 330, 505, 698
HhaI GCGC 2 cut(s) 46, 202
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 3 cut(s) 86, 424, 532
Hin6I GCGC 2 cut(s) 44, 200
HinP1I GCGC 2 cut(s) 44, 200
HpaII CCGG 4 cut(s) 230, 330, 505, 698
HphI GGTGA 3 cut(s) 48, 563, 769
Hpy188III TCNNGA 3 cut(s) 601, 730, 739
HpyAV CCTTC 3 cut(s) 308, 536, 727
HpyCH4III ACNGT 2 cut(s) 64, 586
HpyCH4V TGCA 5 cut(s) 224, 270, 641, 646, 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 510, 701
HpyF3I CTNAG 2 cut(s) 290, 728
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 86, 424, 532
HspAI GCGC 2 cut(s) 44, 200
KasI GGCGCC 1 cut(s) 43
Ksp22I TGATCA 3 cut(s) 7, 154, 312
Kzo9I GATC 4 cut(s) 7, 154, 312, 679
LmnI GCTCC 3 cut(s) 232, 249, 323
LweI GCATC 4 cut(s) 172, 303, 678, 682
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 569
MalI GATC 4 cut(s) 9, 156, 314, 681
MboI GATC 4 cut(s) 7, 154, 312, 679
MboII GAAGA 4 cut(s) 90, 343, 403, 487
MflI RGATCY 1 cut(s) 679
MhlI GDGCHC 3 cut(s) 254, 289, 550
MluCI AATT 7 cut(s) 18, 105, 413, 437, 705, 787, 811
Mly113I GGCGCC 1 cut(s) 44
MnlI CCTC 7 cut(s) 34, 90, 125, 180, 240, 525, 785
MseI TTAA 5 cut(s) 182, 381, 404, 447, 684
MslI CAYNNNNRTG 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 4 cut(s) 230, 330, 505, 698
Mva1269I GAATGC 1 cut(s) 643
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 3 cut(s) 76, 510, 701
NarI GGCGCC 1 cut(s) 44
NdeII GATC 4 cut(s) 7, 154, 312, 679
NlaIII CATG 3 cut(s) 86, 424, 532
NlaIV GGNNCC 3 cut(s) 45, 78, 325
NmuCI GTSAC 1 cut(s) 569
PctI GAATGC 1 cut(s) 643
PinAI ACCGGT 2 cut(s) 329, 697
PkrI GCNGC 1 cut(s) 69
PluTI GGCGCC 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 45, 78, 325
PspPI GGNCC 1 cut(s) 607
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 632
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 5 cut(s) 182, 381, 404, 447, 684
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 4 cut(s) 7, 154, 312, 679
Sau96I GGNCC 1 cut(s) 607
SduI GDGCHC 3 cut(s) 254, 289, 550
SfaNI GCATC 4 cut(s) 172, 303, 678, 682
SfcI CTRYAG 1 cut(s) 222
SfoI GGCGCC 1 cut(s) 45
SgrAI CRCCGGYG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
SpeI ACTAGT 1 cut(s) 143
Sse9I AATT 7 cut(s) 18, 105, 413, 437, 705, 787, 811
SsiI CCGC 3 cut(s) 68, 355, 780
SspDI GGCGCC 1 cut(s) 43
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 254
StyI CCWWGG 2 cut(s) 565, 675
TaaI ACNGT 2 cut(s) 64, 586
TaqI TCGA 1 cut(s) 441
TasI AATT 7 cut(s) 18, 105, 413, 437, 705, 787, 811
TauI GCSGC 1 cut(s) 70
Tru1I TTAA 5 cut(s) 182, 381, 404, 447, 684
Tru9I TTAA 5 cut(s) 182, 381, 404, 447, 684
TscAI CASTG 6 cut(s) 69, 294, 555, 648, 726, 758
TseFI GTSAC 1 cut(s) 569
Tsp45I GTSAC 1 cut(s) 569
TspDTI ATGAA 4 cut(s) 11, 137, 650, 781
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 6 cut(s) 69, 294, 555, 648, 726, 758
Vha464I CTTAAG 1 cut(s) 683
XagI CCTNNNNNAGG 1 cut(s) 174
XapI RAATTY 2 cut(s) 18, 437
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.