Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005310.1

Orthogroup ID

OG0014449

Physical Location & Seq

Genomic Coordinates Reverse (-)

209267 .. 210103

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005310.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

atggctgatcatcaaagaattcatcctgctgtggatgtggaggcgccaccaccatcacaaacagtgccgcctatggtgcctcatggacaccagagttcttcaacaattacacaaaaagagatgaaagagagaggtataggtactagtccagttgatcaacagcatcgccctccattaggtttaagaccatcacaagttgcgcgtgccattccggtaatccctgcagagccggagcaaccagaaaagaggagctcatcatctacttattgcagatgtatgtgttgggcactgagcatccttctccttgtattgatcacaataggagccaccggtggaatactttatattatcttccgcccgaaacttccaagctactctgttaatagcttgaagataagcgatttaaggctcaaattggacatgagcctatatgccgaattcgatgttaagataacagctaacaacccaaacaaaaagattgggatttattatgagcaaggtggccggttgagcgtgtggtatataaacatgaggctttgtgaaggggcactgccaaagttttaccaaggtcaccagaacaaaacagtactcaatgtggtcttgacgggccaaaaccaatacggaaacacattgatgaatgcactacaacagcaacaacaaactggaagcatccccttggatcttaaggttgatgcaccggtagcaattcaagtggggacactgaagctcaggaaggtcaggatactggggcagtgtttgttggttgtggatagcctcaccgctaataatttcattagcataaaagctaataattgtagatttagattgaagccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

278

Amino Acids

30.86

Weight (kDa)

9.6

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54540
fragaria_vesca	FvH4_5g18570
malus_domestica	MD06G1240900.v1.1
prunus_persica	Prupe.5G245100_v2.0.a1
pyrus_communis	pycom06g21590 pycom2874g00100
rosa_chinensis	RchiOBHm_Chr7g0176941
rosa_laevigata	RLG00000005570
rosa_multiflora	Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii	Rroxscaffold_3G00276230
rosa_rugosa	Rorug06G0402300
rosa_samantha	Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana	Rw7G000120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	43, 76
AccII	CGCG	1 cut(s)	202
AciI	CCGC	3 cut(s)	68, 355, 780
AclWI	GGATC	1 cut(s)	687
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	2 cut(s)	18, 437
AcuI	CTGAAG	1 cut(s)	743
AcyI	GRCGYC	1 cut(s)	44
AfaI	GTAC	2 cut(s)	142, 588
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	683
AgeI	ACCGGT	2 cut(s)	329, 697
AgsI	TTSAA	4 cut(s)	102, 391, 710, 829
AhlI	ACTAGT	1 cut(s)	143
AluBI	AGCT	6 cut(s)	252, 372, 387, 458, 727, 806
AluI	AGCT	6 cut(s)	252, 372, 387, 458, 727, 806
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	687
AoxI	GGCC	2 cut(s)	502, 607
ApoI	RAATTY	2 cut(s)	18, 437
AsiGI	ACCGGT	2 cut(s)	329, 697
AspLEI	GCGC	2 cut(s)	46, 202
AspS9I	GGNCC	1 cut(s)	607
AsuHPI	GGTGA	2 cut(s)	563, 769
BaeGI	GKGCMC	2 cut(s)	289, 550
BanI	GGYRCC	2 cut(s)	43, 76
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	254
BccI	CCATC	2 cut(s)	61, 196
BciVI	GTATCC	1 cut(s)	735
BclI	TGATCA	3 cut(s)	7, 154, 312
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	47
BfrI	CTTAAG	1 cut(s)	683
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmcAI	AGTACT	1 cut(s)	588
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	3 cut(s)	45, 78, 325
BmrI	ACTGGG	1 cut(s)	755
BmsI	GCATC	4 cut(s)	172, 303, 678, 682
BmuI	ACTGGG	1 cut(s)	755
Bpu10I	CCTNAGC	1 cut(s)	728
BsaHI	GRCGYC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	565, 675
BsaWI	WCCGGW	3 cut(s)	211, 329, 697
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse118I	RCCGGY	3 cut(s)	329, 504, 697
Bse1I	ACTGG	3 cut(s)	149, 667, 750
BseDI	CCNNGG	2 cut(s)	565, 675
BseGI	GGATG	4 cut(s)	22, 40, 294, 669
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMII	CTCAG	2 cut(s)	281, 742
BseNI	ACTGG	3 cut(s)	149, 667, 750
BseRI	GAGGAG	1 cut(s)	262
BseSI	GKGCMC	2 cut(s)	289, 550
Bsh1236I	CGCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	504, 609
BshNI	GGYRCC	2 cut(s)	43, 76
BshTI	ACCGGT	2 cut(s)	329, 697
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	5 cut(s)	212, 230, 330, 505, 698
BslFI	GGGAC	1 cut(s)	730
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	730
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	2 cut(s)	504, 609
Bsp1286I	GDGCHC	3 cut(s)	254, 289, 550
Bsp143I	GATC	4 cut(s)	7, 154, 312, 679
BspACI	CCGC	3 cut(s)	68, 355, 780
BspANI	GGCC	2 cut(s)	504, 609
BspCNI	CTCAG	2 cut(s)	282, 741
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	3 cut(s)	45, 78, 325
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	687
BspT107I	GGYRCC	2 cut(s)	43, 76
BspTI	CTTAAG	1 cut(s)	683
BsrFI	RCCGGY	3 cut(s)	329, 504, 697
BsrI	ACTGG	3 cut(s)	149, 667, 750
BssAI	RCCGGY	3 cut(s)	329, 504, 697
BssECI	CCNNGG	2 cut(s)	565, 675
BssMI	GATC	4 cut(s)	7, 154, 312, 679
BssNI	GRCGYC	1 cut(s)	44
BssT1I	CCWWGG	2 cut(s)	565, 675
Bst4CI	ACNGT	2 cut(s)	64, 586
BstACI	GRCGYC	1 cut(s)	44
BstAFI	CTTAAG	1 cut(s)	683
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	2 cut(s)	290, 728
BstEII	GGTNACC	1 cut(s)	569
BstENI	CCTNNNNNAGG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	22, 40, 294, 669
BstFNI	CGCG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	2 cut(s)	46, 202
BstKTI	GATC	4 cut(s)	10, 157, 315, 682
BstMBI	GATC	4 cut(s)	7, 154, 312, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 510, 701
BstPI	GGTNACC	1 cut(s)	569
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	289, 550
BstUI	CGCG	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	2 cut(s)	504, 609
BtgZI	GCGATG	1 cut(s)	149
BtsCI	GGATG	4 cut(s)	22, 40, 294, 669
BtsI	GCAGTG	2 cut(s)	548, 758
BtsIMutI	CAGTG	5 cut(s)	69, 287, 548, 719, 758
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	2 cut(s)	46, 202
Cfr10I	RCCGGY	3 cut(s)	329, 504, 697
Cfr13I	GGNCC	1 cut(s)	607
Csp6I	GTAC	2 cut(s)	141, 587
CspAI	ACCGGT	2 cut(s)	329, 697
CspCI	CAANNNNNGTGG	2 cut(s)	693, 728
CviAII	CATG	3 cut(s)	83, 421, 529
CviQI	GTAC	2 cut(s)	141, 587
DdeI	CTNAG	2 cut(s)	290, 728
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	4 cut(s)	9, 156, 314, 681
DpnII	GATC	4 cut(s)	7, 154, 312, 679
EaeI	YGGCCR	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	565, 675
Eco24I	GRGCYC	1 cut(s)	254
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	743
Eco91I	GGTNACC	1 cut(s)	569
EcoICRI	GAGCTC	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	174
EcoO65I	GGTNACC	1 cut(s)	569
EcoRI	GAATTC	2 cut(s)	18, 437
EcoT14I	CCWWGG	2 cut(s)	565, 675
EcoT38I	GRGCYC	1 cut(s)	254
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	565, 675
FaeI	CATG	3 cut(s)	86, 424, 532
FaqI	GGGAC	1 cut(s)	730
FatI	CATG	3 cut(s)	82, 420, 528
FbaI	TGATCA	3 cut(s)	7, 154, 312
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	4 cut(s)	9, 47, 281, 656
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	2 cut(s)	45, 201
GluI	GCNGC	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	504, 609
HapII	CCGG	5 cut(s)	212, 230, 330, 505, 698
HhaI	GCGC	2 cut(s)	46, 202
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	86, 424, 532
Hin6I	GCGC	2 cut(s)	44, 200
HinP1I	GCGC	2 cut(s)	44, 200
HpaII	CCGG	5 cut(s)	212, 230, 330, 505, 698
HphI	GGTGA	2 cut(s)	563, 769
Hpy188III	TCNNGA	3 cut(s)	601, 730, 739
HpyAV	CCTTC	3 cut(s)	308, 536, 727
HpyCH4III	ACNGT	2 cut(s)	64, 586
HpyCH4V	TGCA	4 cut(s)	224, 270, 641, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 510, 701
HpyF3I	CTNAG	2 cut(s)	290, 728
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	3 cut(s)	86, 424, 532
HspAI	GCGC	2 cut(s)	44, 200
KasI	GGCGCC	1 cut(s)	43
Ksp22I	TGATCA	3 cut(s)	7, 154, 312
Kzo9I	GATC	4 cut(s)	7, 154, 312, 679
LmnI	GCTCC	3 cut(s)	232, 249, 323
LweI	GCATC	4 cut(s)	172, 303, 678, 682
MaeI	CTAG	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	4 cut(s)	9, 156, 314, 681
MboI	GATC	4 cut(s)	7, 154, 312, 679
MboII	GAAGA	3 cut(s)	90, 343, 403
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	3 cut(s)	254, 289, 550
MluCI	AATT	7 cut(s)	18, 105, 413, 437, 705, 787, 811
Mly113I	GGCGCC	1 cut(s)	44
MnlI	CCTC	7 cut(s)	34, 90, 125, 180, 240, 525, 785
MseI	TTAA	5 cut(s)	182, 381, 404, 447, 684
MslI	CAYNNNNRTG	1 cut(s)	632
MspCI	CTTAAG	1 cut(s)	683
MspI	CCGG	5 cut(s)	212, 230, 330, 505, 698
Mva1269I	GAATGC	1 cut(s)	643
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	3 cut(s)	76, 510, 701
NarI	GGCGCC	1 cut(s)	44
NdeII	GATC	4 cut(s)	7, 154, 312, 679
NlaIII	CATG	3 cut(s)	86, 424, 532
NlaIV	GGNNCC	3 cut(s)	45, 78, 325
NmuCI	GTSAC	1 cut(s)	569
PctI	GAATGC	1 cut(s)	643
PinAI	ACCGGT	2 cut(s)	329, 697
PkrI	GCNGC	1 cut(s)	69
PluTI	GGCGCC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	569
PspN4I	GGNNCC	3 cut(s)	45, 78, 325
PspPI	GGNCC	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	679
RsaI	GTAC	2 cut(s)	142, 588
RsaNI	GTAC	2 cut(s)	141, 587
RseI	CAYNNNNRTG	1 cut(s)	632
SacI	GAGCTC	1 cut(s)	254
SaqAI	TTAA	5 cut(s)	182, 381, 404, 447, 684
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	7, 154, 312, 679
Sau96I	GGNCC	1 cut(s)	607
ScaI	AGTACT	1 cut(s)	588
SduI	GDGCHC	3 cut(s)	254, 289, 550
SfaNI	GCATC	4 cut(s)	172, 303, 678, 682
SfcI	CTRYAG	1 cut(s)	222
SfoI	GGCGCC	1 cut(s)	45
SgrAI	CRCCGGYG	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	632
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	7 cut(s)	18, 105, 413, 437, 705, 787, 811
SsiI	CCGC	3 cut(s)	68, 355, 780
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	144
SstI	GAGCTC	1 cut(s)	254
StyI	CCWWGG	2 cut(s)	565, 675
TaaI	ACNGT	2 cut(s)	64, 586
TaqI	TCGA	1 cut(s)	441
TasI	AATT	7 cut(s)	18, 105, 413, 437, 705, 787, 811
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	70
Tru1I	TTAA	5 cut(s)	182, 381, 404, 447, 684
Tru9I	TTAA	5 cut(s)	182, 381, 404, 447, 684
TscAI	CASTG	5 cut(s)	69, 294, 555, 726, 758
TseFI	GTSAC	1 cut(s)	569
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	4 cut(s)	11, 137, 650, 781
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	5 cut(s)	69, 294, 555, 726, 758
Vha464I	CTTAAG	1 cut(s)	683
XagI	CCTNNNNNAGG	1 cut(s)	174
XapI	RAATTY	2 cut(s)	18, 437
XspI	CTAG	1 cut(s)	144
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.