MD06G1240900.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0014449
Physical Location & Seq
Reverse (-)
37054987 .. 37055826
840 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1240900.v1.1.491

Sequence Viewer

Length: 840 bp
ATGTCTGATCACCAGAGAGTTAGAGTTCATCCTGCTGGAGATGTGGAGGCACCACCAACAGCACTGCCGCCTGTGCCTCCGGTGGTGCCACTGCACGGACACGGTTCATCATCATCGACTACAGAGAAAGAGAAAGAGAGAGCGACAGAGAAAACAAAGCTGCTTCAGACGAATAATCACTCTGCTCCTTTACAATTACCAGTAGTAGGACGTACCATTAATACTGTAATCCAAGCAAACCCACCAAAAAAGAGAAGCTCATGTACATTCTGCAGATTCATGTGGTGGACAATGGGCATCCTTCTCCTTGTATTGATCATAATAGGAGCCACCGCTGGCATACTTTATCTTATCTTCCACCCTAAACTTCCTAATTACTCGGTTGATAGCTTGAAGATCAGCGACTTAACGCTCAATTTGGGCATGACCTTATATGCTAAATTCGATGTCAAGATAACAGCCAATAACCCAAACAAGAAGATCGGGATTTACTATGAGAAAGGTGGCCGGTTGAGCGTGTGGTATACAAACACGAGGCTTTGTCAAGGGATGCTACCGAAGTTTTACCAAGGTCATCAGAACAAAACACTACTCAATGTGGACTTGACAGGCCAAACGCAATACGGAATCACTTTGATGAATGCACTGCAACAGCAACAACAAACCGGACGCATCCCCTTGGATCTTAAGGTTAACGCACCAGTGGCAATTAAACTCGGAAAATTGAAGCTCAGGAAGGTGACCATCTTGGGGGAATGCTTGCTGGTGGTGGATAGCTTAAGTGCTAACAATTTGATTAGCATTAAAGCTAATAATTGTAGATTTAGAATGAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

280

Amino Acids

31.0

Weight (kDa)

9.91

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 152 - 243 4.3e-08 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 49, 85
AccI GTMKAC 1 cut(s) 524
AciI CCGC 2 cut(s) 68, 333
AclWI GGATC 1 cut(s) 690
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 440
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 2 cut(s) 214, 265
AfiI CCNNNNNNNGG 3 cut(s) 95, 206, 750
AflII CTTAAG 2 cut(s) 686, 778
AgsI TTSAA 2 cut(s) 394, 727
AluBI AGCT 6 cut(s) 160, 258, 390, 730, 777, 809
AluI AGCT 6 cut(s) 160, 258, 390, 730, 777, 809
AlwI GGATC 1 cut(s) 690
AoxI GGCC 2 cut(s) 505, 610
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 1 cut(s) 440
AseI ATTAAT 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 751
BanI GGYRCC 2 cut(s) 49, 85
BarI GAAGNNNNNNTAC 2 cut(s) 247, 279
BauI CACGAG 1 cut(s) 532
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 752
BclI TGATCA 2 cut(s) 7, 315
BfmI CTRYAG 2 cut(s) 120, 271
BfrI CTTAAG 2 cut(s) 686, 778
BisI GCNGC 2 cut(s) 68, 161
BlsI GCNGC 2 cut(s) 69, 162
BmiI GGNNCC 3 cut(s) 51, 87, 328
BmsI GCATC 3 cut(s) 306, 540, 681
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 731
BsaJI CCNNGG 2 cut(s) 568, 678
BsaWI WCCGGW 2 cut(s) 79, 665
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 206, 750
Bse118I RCCGGY 1 cut(s) 507
Bse1I ACTGG 2 cut(s) 200, 701
BseDI CCNNGG 2 cut(s) 568, 678
BseGI GGATG 4 cut(s) 28, 297, 555, 672
BseLI CCNNNNNNNGG 3 cut(s) 95, 206, 750
BseMII CTCAG 1 cut(s) 745
BseNI ACTGG 2 cut(s) 200, 701
BseXI GCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 77
BshFI GGCC 2 cut(s) 507, 612
BshNI GGYRCC 2 cut(s) 49, 85
BsiSI CCGG 3 cut(s) 80, 508, 666
BslI CCNNNNNNNGG 3 cut(s) 95, 206, 750
BsmI GAATGC 2 cut(s) 646, 761
BsnI GGCC 2 cut(s) 507, 612
Bsp1407I TGTACA 1 cut(s) 263
Bsp143I GATC 5 cut(s) 7, 315, 396, 480, 682
BspACI CCGC 2 cut(s) 68, 333
BspANI GGCC 2 cut(s) 507, 612
BspCNI CTCAG 1 cut(s) 744
BspLI GGNNCC 3 cut(s) 51, 87, 328
BspMAI CTGCAG 1 cut(s) 275
BspPI GGATC 1 cut(s) 690
BspT107I GGYRCC 2 cut(s) 49, 85
BspTI CTTAAG 2 cut(s) 686, 778
BsrFI RCCGGY 1 cut(s) 507
BsrGI TGTACA 1 cut(s) 263
BsrI ACTGG 2 cut(s) 200, 701
BssAI RCCGGY 1 cut(s) 507
BssECI CCNNGG 2 cut(s) 568, 678
BssMI GATC 5 cut(s) 7, 315, 396, 480, 682
BssNAI GTATAC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 2 cut(s) 568, 678
Bst1107I GTATAC 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 532
Bst4CI ACNGT 2 cut(s) 104, 226
BstAFI CTTAAG 2 cut(s) 686, 778
BstAUI TGTACA 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 337, 761
BstDEI CTNAG 1 cut(s) 731
BstEII GGTNACC 1 cut(s) 739
BstF5I GGATG 4 cut(s) 28, 297, 555, 672
BstKTI GATC 5 cut(s) 10, 318, 399, 483, 685
BstMBI GATC 5 cut(s) 7, 315, 396, 480, 682
BstMWI GCNNNNNNNGC 3 cut(s) 73, 513, 704
BstPI GGTNACC 1 cut(s) 739
BstSFI CTRYAG 2 cut(s) 120, 271
BstV1I GCAGC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BstZ17I GTATAC 1 cut(s) 525
BsuRI GGCC 2 cut(s) 507, 612
BtsCI GGATG 4 cut(s) 28, 297, 555, 672
BtsI GCAGTG 3 cut(s) 62, 89, 644
BtsIMutI CAGTG 4 cut(s) 62, 89, 644, 708
Cac8I GCNNGC 2 cut(s) 337, 761
Cfr10I RCCGGY 1 cut(s) 507
CseI GACGC 1 cut(s) 678
Csp6I GTAC 2 cut(s) 213, 264
CviAII CATG 3 cut(s) 261, 280, 424
CviQI GTAC 2 cut(s) 213, 264
DdeI CTNAG 1 cut(s) 731
DpnI GATC 5 cut(s) 9, 317, 398, 482, 684
DpnII GATC 5 cut(s) 7, 315, 396, 480, 682
EaeI YGGCCR 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 568, 678
Eco57I CTGAAG 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 739
EcoO65I GGTNACC 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 568, 678
ErhI CCWWGG 2 cut(s) 568, 678
FaeI CATG 3 cut(s) 264, 283, 427
FaiI YATR 9 cut(s) 262, 281, 320, 341, 425, 433, 435, 495, 525
FatI CATG 3 cut(s) 260, 279, 423
FbaI TGATCA 2 cut(s) 7, 315
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 2 cut(s) 68, 161
FokI GGATG 4 cut(s) 15, 284, 562, 659
Fsp4HI GCNGC 2 cut(s) 68, 161
GluI GCNGC 2 cut(s) 68, 161
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 2 cut(s) 507, 612
HapII CCGG 3 cut(s) 80, 508, 666
HgaI GACGC 1 cut(s) 678
Hin1II CATG 3 cut(s) 264, 283, 427
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HinfI GANTC 2 cut(s) 276, 627
HpaI GTTAAC 1 cut(s) 694
HpaII CCGG 3 cut(s) 80, 508, 666
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 4 cut(s) 288, 525, 601, 694
Hpy188I TCNGA 4 cut(s) 7, 168, 579, 719
Hpy188III TCNNGA 3 cut(s) 451, 484, 733
Hpy8I GTNNAC 4 cut(s) 288, 525, 601, 694
HpyAV CCTTC 2 cut(s) 311, 730
HpyCH4III ACNGT 2 cut(s) 104, 226
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 4 cut(s) 94, 273, 644, 649
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 513, 704
HpyF3I CTNAG 1 cut(s) 731
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 3 cut(s) 264, 283, 427
Ksp22I TGATCA 2 cut(s) 7, 315
KspAI GTTAAC 1 cut(s) 694
Kzo9I GATC 5 cut(s) 7, 315, 396, 480, 682
LmnI GCTCC 2 cut(s) 190, 326
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 3 cut(s) 306, 540, 681
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 739
MalI GATC 5 cut(s) 9, 317, 398, 482, 684
MboI GATC 5 cut(s) 7, 315, 396, 480, 682
MboII GAAGA 3 cut(s) 346, 406, 490
MflI RGATCY 1 cut(s) 682
MluCI AATT 8 cut(s) 194, 373, 415, 440, 708, 722, 790, 814
MnlI CCTC 3 cut(s) 40, 87, 528
MseI TTAA 7 cut(s) 219, 407, 687, 693, 711, 779, 804
MslI CAYNNNNRTG 1 cut(s) 635
MspA1I CMGCKG 1 cut(s) 335
MspCI CTTAAG 2 cut(s) 686, 778
MspI CCGG 3 cut(s) 80, 508, 666
Mva1269I GAATGC 2 cut(s) 646, 761
MwoI GCNNNNNNNGC 3 cut(s) 73, 513, 704
NdeII GATC 5 cut(s) 7, 315, 396, 480, 682
NlaIII CATG 3 cut(s) 264, 283, 427
NlaIV GGNNCC 3 cut(s) 51, 87, 328
NmuCI GTSAC 1 cut(s) 739
PctI GAATGC 2 cut(s) 646, 761
PfeI GAWTC 2 cut(s) 276, 627
PkrI GCNGC 2 cut(s) 69, 162
PshBI ATTAAT 1 cut(s) 219
PspEI GGTNACC 1 cut(s) 739
PspN4I GGNNCC 3 cut(s) 51, 87, 328
PstI CTGCAG 1 cut(s) 275
PsuI RGATCY 1 cut(s) 682
RsaI GTAC 2 cut(s) 214, 265
RsaNI GTAC 2 cut(s) 213, 264
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 7 cut(s) 219, 407, 687, 693, 711, 779, 804
SatI GCNGC 2 cut(s) 68, 161
Sau3AI GATC 5 cut(s) 7, 315, 396, 480, 682
SfaNI GCATC 3 cut(s) 306, 540, 681
SfcI CTRYAG 2 cut(s) 120, 271
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 2 cut(s) 686, 778
SmoI CTYRAG 2 cut(s) 686, 778
Sse9I AATT 8 cut(s) 194, 373, 415, 440, 708, 722, 790, 814
SsiI CCGC 2 cut(s) 68, 333
StyI CCWWGG 2 cut(s) 568, 678
TaaI ACNGT 2 cut(s) 104, 226
TaiI ACGT 1 cut(s) 214
TaqI TCGA 2 cut(s) 116, 444
TasI AATT 8 cut(s) 194, 373, 415, 440, 708, 722, 790, 814
TatI WGTACW 1 cut(s) 263
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 2 cut(s) 276, 627
Tru1I TTAA 7 cut(s) 219, 407, 687, 693, 711, 779, 804
Tru9I TTAA 7 cut(s) 219, 407, 687, 693, 711, 779, 804
TscAI CASTG 4 cut(s) 69, 96, 651, 708
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 4 cut(s) 17, 96, 268, 653
TspGWI ACGGA 2 cut(s) 111, 639
TspRI CASTG 4 cut(s) 69, 96, 651, 708
Vha464I CTTAAG 2 cut(s) 686, 778
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.