pycom06g21590

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014449
Physical Location & Seq
Reverse (-)
24174988 .. 24175866
879 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g21590.1

Sequence Viewer

Length: 879 bp
ATGAAGAGTTGTATCCTCGGTGGCATTTTGTTTGGAAAGTTAATAATAGAGATGTCTGATCACCAGAGAGTTAGAGTTCATCCTGCTGGAGACATGGAGGCACAACCAACAGCACTGCCGCCTGTGCCTCCGGTGGTGCCACTGCATGGACACGGTTCATCATCATCGAGTACAGAGAAAGCGACAGAGAAAATAAAGCTGCTTCTGACGAATAATCTCTCTACTCCTTTACAATTACCAGTAGTAGGACGTACCATTAATCCGGTAATCCAAGCAAACCCACCAAAAAAGAGAAGCTCATGTACATGCTGCAGATGCATGTGGTGGACAATGGGCATCCTTCTTCTTGTATTGATAATAATAGGAGCCACCGCTGGCATACTTTATCTTATCTTCCACCCTAAACTTCCTAATTACTCGGTTGATAGCTTGAAGATCAGCGACTTAACGCTCAATTTGGACATGACCTTATATGCTAAATTCGACGTCAAGATAACAGCCAATAACCCAAACAAGAAGATCGGGATTTACTATGAGAAAGGTGGCCGGTTGAGCGTGTGGTATACAAACACGAGGCTTTGTCAAGGGATGCTACCGAAGTTTTACCAAGGTCATCAGAACAAAACACTACTCAATGTGGACTTGACAGGCCAAACGCAATACGGAAGCACTTTGATGAATGCACTGCAACAGCAACAACAAACCGGACGCATCCCCTTGGTTCTTAAGGTTAACGCACCAGTGGCAATTAAACTTGGAAAATTGAAGCTCAGGAAGGTGACCATCTTGGGGGAATGCTTGCTGGTGGTGGATAGTTTAAGTGCTAACAATTTGATTAGCATTAAAGCTAATAATTGTAGATTTAGAATGAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

293

Amino Acids

32.25

Weight (kDa)

9.8

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 165 - 248 1e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014449)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54540
fragaria_vesca FvH4_5g18570
malus_domestica MD06G1240900.v1.1
prunus_persica Prupe.5G245100_v2.0.a1
pyrus_communis pycom06g21590 pycom2874g00100
rosa_chinensis RchiOBHm_Chr7g0176941
rosa_laevigata RLG00000005570
rosa_multiflora Rmu_sc0005310.1_g000040 Rmu_sc0005310.1_g000041
rosa_roxburghii Rroxscaffold_3G00276230
rosa_rugosa Rorug06G0402300
rosa_samantha Rh7AG001600 Rh7BG002000 Rh7CG001500 Rh7DG002000
rosa_wichuraiana Rw7G000120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 489
AccB1I GGYRCC 1 cut(s) 136
AccB7I CCANNNNNTGG 1 cut(s) 146
AccI GTMKAC 1 cut(s) 563
AciI CCGC 2 cut(s) 119, 372
AcoI YGGCCR 1 cut(s) 544
AcsI RAATTY 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 3 cut(s) 172, 253, 304
AfiI CCNNNNNNNGG 3 cut(s) 146, 245, 789
AflII CTTAAG 1 cut(s) 725
AgsI TTSAA 2 cut(s) 433, 766
AluBI AGCT 5 cut(s) 199, 297, 429, 769, 848
AluI AGCT 5 cut(s) 199, 297, 429, 769, 848
Alw26I GTCTC 1 cut(s) 84
AoxI GGCC 2 cut(s) 544, 649
ApeKI GCWGC 2 cut(s) 199, 309
ApoI RAATTY 1 cut(s) 479
AseI ATTAAT 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 53, 790
BanI GGYRCC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BauI CACGAG 1 cut(s) 571
BbvI GCAGC 2 cut(s) 186, 296
BccI CCATC 1 cut(s) 791
BciVI GTATCC 1 cut(s) 23
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 310
BfrI CTTAAG 1 cut(s) 725
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 3 cut(s) 119, 200, 310
BlsI GCNGC 3 cut(s) 120, 201, 311
BmiI GGNNCC 2 cut(s) 138, 367
BmsI GCATC 4 cut(s) 305, 345, 579, 720
BpmI CTGGAG 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 770
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 16, 607, 717
BsaWI WCCGGW 3 cut(s) 130, 262, 704
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 245, 789
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 2 cut(s) 239, 740
BseDI CCNNGG 3 cut(s) 16, 607, 717
BseGI GGATG 4 cut(s) 79, 336, 594, 711
BseLI CCNNNNNNNGG 3 cut(s) 146, 245, 789
BseMII CTCAG 1 cut(s) 784
BseNI ACTGG 2 cut(s) 239, 740
BseXI GCAGC 2 cut(s) 186, 296
BshFI GGCC 2 cut(s) 546, 651
BshNI GGYRCC 1 cut(s) 136
BsiSI CCGG 4 cut(s) 131, 263, 547, 705
BslI CCNNNNNNNGG 3 cut(s) 146, 245, 789
BsmAI GTCTC 1 cut(s) 84
BsmI GAATGC 2 cut(s) 685, 800
BsnI GGCC 2 cut(s) 546, 651
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 58, 435, 519
BspACI CCGC 2 cut(s) 119, 372
BspANI GGCC 2 cut(s) 546, 651
BspCNI CTCAG 1 cut(s) 783
BspLI GGNNCC 2 cut(s) 138, 367
BspMAI CTGCAG 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 136
BspTI CTTAAG 1 cut(s) 725
BsrFI RCCGGY 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 302
BsrI ACTGG 2 cut(s) 239, 740
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 16, 607, 717
BssMI GATC 3 cut(s) 58, 435, 519
BssNAI GTATAC 1 cut(s) 564
BssNI GRCGYC 1 cut(s) 486
BssSI CACGAG 1 cut(s) 571
BssT1I CCWWGG 2 cut(s) 607, 717
Bst1107I GTATAC 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 571
Bst4CI ACNGT 1 cut(s) 155
BstACI GRCGYC 1 cut(s) 486
BstAFI CTTAAG 1 cut(s) 725
BstAUI TGTACA 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 376, 800
BstDEI CTNAG 1 cut(s) 770
BstEII GGTNACC 1 cut(s) 778
BstF5I GGATG 4 cut(s) 79, 336, 594, 711
BstKTI GATC 3 cut(s) 61, 438, 522
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 3 cut(s) 58, 435, 519
BstMWI GCNNNNNNNGC 4 cut(s) 124, 315, 552, 743
BstNSI RCATGY 2 cut(s) 309, 322
BstPI GGTNACC 1 cut(s) 778
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 186, 296
BstZ17I GTATAC 1 cut(s) 564
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 2 cut(s) 546, 651
BtsCI GGATG 4 cut(s) 79, 336, 594, 711
BtsI GCAGTG 3 cut(s) 113, 140, 683
BtsIMutI CAGTG 4 cut(s) 113, 140, 683, 747
Cac8I GCNNGC 2 cut(s) 376, 800
Cfr10I RCCGGY 1 cut(s) 546
CseI GACGC 1 cut(s) 717
Csp6I GTAC 3 cut(s) 171, 252, 303
CviAII CATG 6 cut(s) 94, 146, 300, 306, 319, 463
CviQI GTAC 3 cut(s) 171, 252, 303
DdeI CTNAG 1 cut(s) 770
DpnI GATC 3 cut(s) 60, 437, 521
DpnII GATC 3 cut(s) 58, 435, 519
EaeI YGGCCR 1 cut(s) 544
Eco130I CCWWGG 2 cut(s) 607, 717
Eco91I GGTNACC 1 cut(s) 778
EcoO65I GGTNACC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 607, 717
EcoT22I ATGCAT 1 cut(s) 320
ErhI CCWWGG 2 cut(s) 607, 717
FaeI CATG 6 cut(s) 97, 149, 303, 309, 322, 466
FatI CATG 6 cut(s) 93, 145, 299, 305, 318, 462
FbaI TGATCA 1 cut(s) 58
FblI GTMKAC 1 cut(s) 563
Fnu4HI GCNGC 3 cut(s) 119, 200, 310
FokI GGATG 4 cut(s) 66, 323, 601, 698
Fsp4HI GCNGC 3 cut(s) 119, 200, 310
GluI GCNGC 3 cut(s) 119, 200, 310
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 2 cut(s) 546, 651
HapII CCGG 4 cut(s) 131, 263, 547, 705
HgaI GACGC 1 cut(s) 717
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 6 cut(s) 97, 149, 303, 309, 322, 466
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 4 cut(s) 131, 263, 547, 705
HphI GGTGA 2 cut(s) 53, 790
Hpy166II GTNNAC 4 cut(s) 327, 564, 640, 733
Hpy188I TCNGA 3 cut(s) 58, 207, 618
Hpy188III TCNNGA 3 cut(s) 490, 523, 772
Hpy8I GTNNAC 4 cut(s) 327, 564, 640, 733
Hpy99I CGWCG 1 cut(s) 488
HpyAV CCTTC 2 cut(s) 350, 769
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4IV ACGT 2 cut(s) 250, 486
HpyCH4V TGCA 5 cut(s) 145, 312, 318, 683, 688
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 315, 552, 743
HpyF3I CTNAG 1 cut(s) 770
HpySE526I ACGT 2 cut(s) 250, 486
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 6 cut(s) 97, 149, 303, 309, 322, 466
Ksp22I TGATCA 1 cut(s) 58
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 3 cut(s) 58, 435, 519
LmnI GCTCC 1 cut(s) 365
Lsp1109I GCAGC 2 cut(s) 186, 296
LweI GCATC 4 cut(s) 305, 345, 579, 720
MaeII ACGT 2 cut(s) 250, 486
MaeIII GTNAC 1 cut(s) 778
MalI GATC 3 cut(s) 60, 437, 521
MboI GATC 3 cut(s) 58, 435, 519
MboII GAAGA 5 cut(s) 16, 335, 385, 445, 529
MluCI AATT 8 cut(s) 233, 412, 454, 479, 747, 761, 829, 853
MnlI CCTC 4 cut(s) 26, 91, 138, 567
Mph1103I ATGCAT 1 cut(s) 320
MseI TTAA 9 cut(s) 41, 258, 446, 726, 732, 750, 818, 843, 877
MslI CAYNNNNRTG 2 cut(s) 304, 674
MspA1I CMGCKG 1 cut(s) 374
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 4 cut(s) 131, 263, 547, 705
Mva1269I GAATGC 2 cut(s) 685, 800
MwoI GCNNNNNNNGC 4 cut(s) 124, 315, 552, 743
NdeII GATC 3 cut(s) 58, 435, 519
NlaIII CATG 6 cut(s) 97, 149, 303, 309, 322, 466
NlaIV GGNNCC 2 cut(s) 138, 367
NmuCI GTSAC 1 cut(s) 778
NsiI ATGCAT 1 cut(s) 320
NspI RCATGY 2 cut(s) 309, 322
PctI GAATGC 2 cut(s) 685, 800
PflMI CCANNNNNTGG 1 cut(s) 146
PkrI GCNGC 3 cut(s) 120, 201, 311
PshBI ATTAAT 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 778
PspN4I GGNNCC 2 cut(s) 138, 367
PstI CTGCAG 1 cut(s) 314
RsaI GTAC 3 cut(s) 172, 253, 304
RsaNI GTAC 3 cut(s) 171, 252, 303
RseI CAYNNNNRTG 2 cut(s) 304, 674
SaqAI TTAA 9 cut(s) 41, 258, 446, 726, 732, 750, 818, 843, 877
SatI GCNGC 3 cut(s) 119, 200, 310
Sau3AI GATC 3 cut(s) 58, 435, 519
SfaNI GCATC 4 cut(s) 305, 345, 579, 720
SfcI CTRYAG 1 cut(s) 310
SmiMI CAYNNNNRTG 2 cut(s) 304, 674
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 8 cut(s) 233, 412, 454, 479, 747, 761, 829, 853
SsiI CCGC 2 cut(s) 119, 372
StyI CCWWGG 2 cut(s) 607, 717
TaaI ACNGT 1 cut(s) 155
TaiI ACGT 2 cut(s) 253, 489
TaqI TCGA 2 cut(s) 167, 483
TasI AATT 8 cut(s) 233, 412, 454, 479, 747, 761, 829, 853
TatI WGTACW 2 cut(s) 170, 302
TauI GCSGC 1 cut(s) 121
Tru1I TTAA 9 cut(s) 41, 258, 446, 726, 732, 750, 818, 843, 877
Tru9I TTAA 9 cut(s) 41, 258, 446, 726, 732, 750, 818, 843, 877
TscAI CASTG 4 cut(s) 120, 147, 690, 747
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 2 cut(s) 199, 309
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 4 cut(s) 17, 68, 147, 692
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 4 cut(s) 120, 147, 690, 747
Van91I CCANNNNNTGG 1 cut(s) 146
Vha464I CTTAAG 1 cut(s) 725
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 1 cut(s) 479
XceI RCATGY 2 cut(s) 309, 322
XmiI GTMKAC 1 cut(s) 563
ZraI GACGTC 1 cut(s) 487
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.